Rroxscaffold_3G00221010

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001255
Physical Location & Seq
Forward (+)
3661393 .. 3665401
4009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221010.1

Sequence Viewer

Length: 1572 bp
ATGGACACCAGAGGTGATGGTGAAATGAATGGAGAAGTACCAAGAAGGAACCAGCGAGTAGCTCTTCAAGATAGAACCAATGTCGAGGCAGCCCGGCTGTTAGCAAATGCACAGAAGAACAATGTGAACCCAGTGCTAGTGCCTAGTCTTCAAGACAAGGTAGCTCTCACTAGAAAATGTGCCCCTGAAAAGAAGGGTACCAAGAAGAAACCCATAGATGAAGATGTGGTTGTTATAAGTTCTGATGAAGAAGAGGAGAAACCTGTCAATAGAAGCGAGCCATCACAAGGGTCAAGGAAGGAAGTGAAGACTCTCACTTCGATTCTAACTGCTCAAAGCAAGGCTATGGCTGGTGGAACCACCAACAAGCCAAAGGAACAAATTGTGGACTTTGACTCAGCTGATGTTAATGTTGTTATAAGTTCTGATGAAGAAGAGGAGAAACCTGTCAATAGAAGCAAGCCATCACAAGGGTCAAGGAAGGAAGTGAAGACTCTCACTTCGATTCTAACTGCTCAAAGCAAGGCTATGGCTGGTGGAACCACCAACAAGCCAAAGGAACAAATTGTGGACTTTGACTCAGCTGATGTTAATGTTGTTATAAGTTCTGATGAAGAAGAGGAGAAACCTGTCAATAGAAGCAAGTCATCACAAGGGTCAAATAAGGAAGTGAAGACTCTCACTTCGATTCTAACTGCTCGAAGCAAGGCTATGGCTGGTGGAAGCACCAACAAGCCAAAGGAGCAAATTGTGGACTTTGACTCAGCTGATGTTAATGACGAATTAGCAGTTGTTGAGTATGTTGATGATATGTACAAGTTCTACAAACTTGAAGAGGATGGGAACCGAGTCGGAGATTACCTGGACTCACAGCCAGAAGTCAATTCGTATATGAGATCAGTCCTCATAGACTGGCTGATAGAAGTTCACAGGAAATTTCAACTGATGCCAGAAACATTCTACCTTACCGTGGATATAATTGACAGATATCTTTCAGTGAGGATTGTTCCTAGGAAAAAATTTCAGCTACTTGGCATTAGTTCTATTTTGATAGCATCAAAATATGAGGAAATTTGGGCTCCGAAGGTCAATGACTTTGTATGCATAACAGACGCTGCATATATGGATGATGAGATTCGGGACATGGAGAAAGAAATCTTGGGAAAGCTGGAGTGGTATTTGACAGTTCCAACACCTTATGTCTTTCTTGCTAGATACATCAAAGCTTCTGTTTCACCTGATGATGAGATGAAGAATATGGTTTTCTTCCTAGCTGAACTTGGAGTCATGCATTATCAAACAATCATCTCGTACTCTCCATCCATGATAGCTGCTGCAGCTGTGTATGCTGCCCGTTGTACCCTCATCAAGACCCCTTTCTGGACTGCAACTCTGAAGCACCACACTGGCTACTCGGAAGAAGAGCTAAGGGAATGTGCTAAGGTCTTGGTTGGCTTTCACTCGAATGCTGCAGAAAGTAATTTTAAAGCTGTCTACCGGAAATACTCAAAACCTGAATTTGGTGCTGTAGCTCATCTCAATCCGGCAAAAGCTTTCAAGTCCACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

523

Amino Acids

58.54

Weight (kDa)

5.61

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 270 - 395 1.8e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 397 - 515 6.7e-40 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 236, 419, 602
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 1494
AcsI RAATTY 4 cut(s) 935, 1019, 1071, 1517
AcuI CTGAAG 1 cut(s) 1415
AfaI GTAC 5 cut(s) 39, 199, 815, 1313, 1360
AfiI CCNNNNNNNGG 5 cut(s) 287, 470, 970, 1380, 1520
AgsI TTSAA 5 cut(s) 68, 152, 833, 941, 1558
AjnI CCWGG 1 cut(s) 861
AjuI GAANNNNNNNTTGG 2 cut(s) 1142, 1174
AlwNI CAGNNNCTG 1 cut(s) 1115
ApeKI GCWGC 7 cut(s) 89, 1115, 1331, 1334, 1337, 1349, 1469
ApoI RAATTY 4 cut(s) 935, 1019, 1071, 1517
ArsI GACNNNNNNTTYG 6 cut(s) 301, 333, 484, 516, 667, 699
Asp718I GGTACC 1 cut(s) 197
AspA2I CCTAGG 1 cut(s) 1010
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 26, 32, 1227
AvrII CCTAGG 1 cut(s) 1010
BaeGI GKGCMC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 1081
BbsI GAAGAC 4 cut(s) 140, 314, 497, 680
BbvI GCAGC 7 cut(s) 101, 1102, 1318, 1321, 1336, 1349, 1456
BccI CCATC 5 cut(s) 11, 289, 472, 833, 1327
BciT130I CCWGG 1 cut(s) 863
BcnI CCSGG 1 cut(s) 94
BfaI CTAG 6 cut(s) 137, 144, 171, 1011, 1212, 1271
BfmI CTRYAG 3 cut(s) 1335, 1470, 1527
BisI GCNGC 7 cut(s) 90, 1116, 1332, 1335, 1338, 1350, 1470
BlnI CCTAGG 1 cut(s) 1010
BlsI GCNGC 7 cut(s) 91, 1117, 1333, 1336, 1339, 1351, 1471
Bme1390I CCNGG 2 cut(s) 94, 863
BmiI GGNNCC 6 cut(s) 50, 199, 358, 541, 845, 1080
BmrFI CCNGG 2 cut(s) 94, 863
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 2 cut(s) 936, 1064
BmuI ACTGGG 1 cut(s) 125
BpiI GAAGAC 4 cut(s) 140, 314, 497, 680
BpmI CTGGAG 1 cut(s) 1190
Bpu10I CCTNAGC 2 cut(s) 1427, 1440
BpuMI CCSGG 1 cut(s) 94
BsaJI CCNNGG 2 cut(s) 969, 1010
BsaWI WCCGGW 1 cut(s) 1497
Bsc4I CCNNNNNNNGG 5 cut(s) 287, 470, 970, 1380, 1520
Bse1I ACTGG 3 cut(s) 131, 917, 1411
BseBI CCWGG 1 cut(s) 863
BseDI CCNNGG 2 cut(s) 969, 1010
BseGI GGATG 3 cut(s) 844, 1132, 1319
BseLI CCNNNNNNNGG 5 cut(s) 287, 470, 970, 1380, 1520
BseMII CTCAG 3 cut(s) 411, 594, 777
BseNI ACTGG 3 cut(s) 131, 917, 1411
BseRI GAGGAG 3 cut(s) 269, 452, 635
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 7 cut(s) 101, 1102, 1318, 1321, 1336, 1349, 1456
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 3 cut(s) 94, 1498, 1544
BslFI GGGAC 1 cut(s) 1154
BslI CCNNNNNNNGG 5 cut(s) 287, 470, 970, 1380, 1520
BsmFI GGGAC 1 cut(s) 1154
BsmI GAATGC 1 cut(s) 1471
Bsp1286I GDGCHC 2 cut(s) 184, 1081
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 1 cut(s) 896
BspCNI CTCAG 3 cut(s) 410, 593, 776
BspHI TCATGA 1 cut(s) 1568
BspLI GGNNCC 6 cut(s) 50, 199, 358, 541, 845, 1080
BspMAI CTGCAG 2 cut(s) 1339, 1474
BspQI GCTCTTC 2 cut(s) 69, 1416
BspT107I GGYRCC 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 813
BsrI ACTGG 3 cut(s) 131, 917, 1411
BssECI CCNNGG 2 cut(s) 969, 1010
BssMI GATC 1 cut(s) 896
BssT1I CCWWGG 1 cut(s) 1010
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 2 cut(s) 970, 1186
Bst6I CTCTTC 6 cut(s) 69, 246, 429, 612, 828, 1416
BstAUI TGTACA 1 cut(s) 813
BstC8I GCNNGC 2 cut(s) 278, 461
BstDEI CTNAG 5 cut(s) 397, 580, 763, 1427, 1440
BstDSI CCRYGG 1 cut(s) 969
BstF5I GGATG 3 cut(s) 844, 1132, 1319
BstKTI GATC 1 cut(s) 899
BstMBI GATC 1 cut(s) 896
BstMWI GCNNNNNNNGC 3 cut(s) 742, 1337, 1346
BstNI CCWGG 1 cut(s) 863
BstSCI CCNGG 2 cut(s) 92, 861
BstSFI CTRYAG 3 cut(s) 1335, 1470, 1527
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 7 cut(s) 101, 1102, 1318, 1321, 1336, 1349, 1456
BstV2I GAAGAC 4 cut(s) 140, 314, 497, 680
BtgI CCRYGG 1 cut(s) 969
BtsCI GGATG 3 cut(s) 844, 1132, 1319
BtsIMutI CAGTG 3 cut(s) 138, 1002, 1404
Cac8I GCNNGC 2 cut(s) 278, 461
CaiI CAGNNNCTG 1 cut(s) 1115
CciI TCATGA 1 cut(s) 1568
CseI GACGC 1 cut(s) 1121
Csp6I GTAC 5 cut(s) 38, 198, 814, 1312, 1359
CviAII CATG 4 cut(s) 1144, 1288, 1324, 1569
CviQI GTAC 5 cut(s) 38, 198, 814, 1312, 1359
DdeI CTNAG 5 cut(s) 397, 580, 763, 1427, 1440
DpnI GATC 1 cut(s) 898
DpnII GATC 1 cut(s) 896
DraI TTTAAA 1 cut(s) 1486
Eam1104I CTCTTC 6 cut(s) 69, 246, 429, 612, 828, 1416
EarI CTCTTC 6 cut(s) 69, 246, 429, 612, 828, 1416
Eco130I CCWWGG 1 cut(s) 1010
Eco24I GRGCYC 1 cut(s) 1081
Eco32I GATATC 1 cut(s) 989
Eco57I CTGAAG 1 cut(s) 1415
EcoRII CCWGG 1 cut(s) 861
EcoRV GATATC 1 cut(s) 989
EcoT14I CCWWGG 1 cut(s) 1010
EcoT22I ATGCAT 2 cut(s) 1106, 1293
EcoT38I GRGCYC 1 cut(s) 1081
ErhI CCWWGG 1 cut(s) 1010
FaeI CATG 4 cut(s) 1147, 1291, 1327, 1572
FaqI GGGAC 1 cut(s) 1154
FatI CATG 4 cut(s) 1143, 1287, 1323, 1568
FblI GTMKAC 1 cut(s) 1494
Fnu4HI GCNGC 7 cut(s) 90, 1116, 1332, 1335, 1338, 1350, 1470
FokI GGATG 3 cut(s) 851, 1139, 1306
FriOI GRGCYC 1 cut(s) 1081
Fsp4HI GCNGC 7 cut(s) 90, 1116, 1332, 1335, 1338, 1350, 1470
FspBI CTAG 6 cut(s) 137, 144, 171, 1011, 1212, 1271
GluI GCNGC 7 cut(s) 90, 1116, 1332, 1335, 1338, 1350, 1470
GsuI CTGGAG 1 cut(s) 1190
HapII CCGG 3 cut(s) 94, 1498, 1544
HgaI GACGC 1 cut(s) 1121
Hin1II CATG 4 cut(s) 1147, 1291, 1327, 1572
HindIII AAGCTT 2 cut(s) 1224, 1551
HpaII CCGG 3 cut(s) 94, 1498, 1544
HphI GGTGA 3 cut(s) 26, 32, 1227
Hpy166II GTNNAC 7 cut(s) 127, 388, 571, 754, 928, 1495, 1563
Hpy188I TCNGA 7 cut(s) 244, 427, 610, 854, 1083, 1395, 1417
Hpy188III TCNNGA 6 cut(s) 68, 152, 1139, 1369, 1381, 1569
Hpy8I GTNNAC 7 cut(s) 127, 388, 571, 754, 928, 1495, 1563
HpyAV CCTTC 5 cut(s) 39, 187, 292, 475, 1078
HpyCH4III ACNGT 2 cut(s) 970, 1186
HpyCH4V TGCA 7 cut(s) 110, 1104, 1118, 1291, 1337, 1388, 1472
HpyF10VI GCNNNNNNNGC 3 cut(s) 742, 1337, 1346
HpyF3I CTNAG 5 cut(s) 397, 580, 763, 1427, 1440
Hsp92II CATG 4 cut(s) 1147, 1291, 1327, 1572
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 896
LguI GCTCTTC 2 cut(s) 69, 1416
LmnI GCTCC 2 cut(s) 742, 1084
Lsp1109I GCAGC 7 cut(s) 101, 1102, 1318, 1321, 1336, 1349, 1456
LweI GCATC 2 cut(s) 936, 1064
MaeI CTAG 6 cut(s) 137, 144, 171, 1011, 1212, 1271
MalI GATC 1 cut(s) 898
MboI GATC 1 cut(s) 896
MhlI GDGCHC 2 cut(s) 184, 1081
MlyI GAGTC 9 cut(s) 304, 389, 487, 572, 670, 755, 858, 860, 1293
MmeI TCCRAC 2 cut(s) 832, 1214
Mph1103I ATGCAT 2 cut(s) 1106, 1293
MseI TTAA 4 cut(s) 408, 591, 774, 1485
MslI CAYNNNNRTG 1 cut(s) 1464
MspA1I CMGCKG 4 cut(s) 401, 584, 767, 1340
MspI CCGG 3 cut(s) 94, 1498, 1544
MspR9I CCNGG 2 cut(s) 94, 863
Mva1269I GAATGC 1 cut(s) 1471
MvaI CCWGG 1 cut(s) 863
MwoI GCNNNNNNNGC 3 cut(s) 742, 1337, 1346
NciI CCSGG 1 cut(s) 94
NdeII GATC 1 cut(s) 896
NlaIII CATG 4 cut(s) 1147, 1291, 1327, 1572
NlaIV GGNNCC 6 cut(s) 50, 199, 358, 541, 845, 1080
NsiI ATGCAT 2 cut(s) 1106, 1293
PagI TCATGA 1 cut(s) 1568
PciSI GCTCTTC 2 cut(s) 69, 1416
PctI GAATGC 1 cut(s) 1471
PfeI GAWTC 4 cut(s) 322, 505, 688, 1135
PkrI GCNGC 7 cut(s) 91, 1117, 1333, 1336, 1339, 1351, 1471
PleI GAGTC 9 cut(s) 304, 389, 487, 572, 670, 755, 857, 860, 1292
PpsI GAGTC 9 cut(s) 304, 389, 487, 572, 670, 755, 857, 860, 1292
PsiI TTATAA 3 cut(s) 236, 419, 602
Psp6I CCWGG 1 cut(s) 861
PspGI CCWGG 1 cut(s) 861
PspN4I GGNNCC 6 cut(s) 50, 199, 358, 541, 845, 1080
PstI CTGCAG 2 cut(s) 1339, 1474
PstNI CAGNNNCTG 1 cut(s) 1115
PvuII CAGCTG 4 cut(s) 401, 584, 767, 1340
RsaI GTAC 5 cut(s) 39, 199, 815, 1313, 1360
RsaNI GTAC 5 cut(s) 38, 198, 814, 1312, 1359
RseI CAYNNNNRTG 1 cut(s) 1464
SapI GCTCTTC 2 cut(s) 69, 1416
SaqAI TTAA 4 cut(s) 408, 591, 774, 1485
SatI GCNGC 7 cut(s) 90, 1116, 1332, 1335, 1338, 1350, 1470
Sau3AI GATC 1 cut(s) 896
SchI GAGTC 9 cut(s) 304, 389, 487, 572, 670, 755, 858, 860, 1293
ScrFI CCNGG 2 cut(s) 94, 863
SduI GDGCHC 2 cut(s) 184, 1081
SfaNI GCATC 2 cut(s) 936, 1064
SfcI CTRYAG 3 cut(s) 1335, 1470, 1527
SmiMI CAYNNNNRTG 1 cut(s) 1464
SspMI CTAG 6 cut(s) 137, 144, 171, 1011, 1212, 1271
StyD4I CCNGG 2 cut(s) 92, 861
StyI CCWWGG 1 cut(s) 1010
TaaI ACNGT 2 cut(s) 970, 1186
TaqI TCGA 6 cut(s) 84, 320, 503, 686, 700, 1463
TatI WGTACW 1 cut(s) 813
TfiI GAWTC 4 cut(s) 322, 505, 688, 1135
Tru1I TTAA 4 cut(s) 408, 591, 774, 1485
Tru9I TTAA 4 cut(s) 408, 591, 774, 1485
TscAI CASTG 3 cut(s) 138, 1002, 1411
TseI GCWGC 7 cut(s) 89, 1115, 1331, 1334, 1337, 1349, 1469
TspDTI ATGAA 7 cut(s) 41, 234, 261, 444, 627, 1265, 1557
TspRI CASTG 3 cut(s) 138, 1002, 1411
XapI RAATTY 4 cut(s) 935, 1019, 1071, 1517
XmaJI CCTAGG 1 cut(s) 1010
XmiI GTMKAC 1 cut(s) 1494
XspI CTAG 6 cut(s) 137, 144, 171, 1011, 1212, 1271
Zsp2I ATGCAT 2 cut(s) 1106, 1293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.