Rh5AG511200

cell division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001255
Physical Location & Seq
Forward (+)
86465070 .. 86468079
3010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG511200.1

Sequence Viewer

Length: 1263 bp
ATGGACACCGGAGCAGTCCTTCCTCCACAACCCAGAGGGGATGGTAAAGTCCATGGAGAAGCACCAAGAAGGAACCAGCGAGTAGCTCTTCGAGACAGGACCAATGTTGAGGCTGGTCAGGTCGAAATCAAAGGGAAGCCCCCTGTTCAGAACAATCGCCCCATGACAAGGAGATTTCATGCCGAACTGTTAGCAAACAATGCACAGAAGAACAATGTGAACCAAGTGCTCGGTGTTGTAGACAAGGCAGCTCAGAATAGAAAATGCGCCCCTACAAAGAATGTTACTGAGAAGGTAACTGATGAAGAGAAGGAGAAGCCTGTCAATAGAAGCAAGCCAGTACAAGGTCCAAGGAAGGAAGTCAAGGCTTTCACTTCAACTCTAACAGCTCGAAGCAAGGCTATGGCTTGTGGAGTCACCAACAAGCCAAAAGAGCAGATTGTGGATTTTGACGCAGCTGATGTCAATGATGAACTGGCAGTTGTTGAGTACGTTGATGAATTGTACAAGTTCTACAAACTTGATGAGGATGGCAGCCGAGTTGGAGATTACTTGGACAAACAGCCAGATCTTAATTCGAAGATGAGGTCTATCCTTGTAGACTGGCTGATAGATGTTCACAGGAAATTTGAACTAACGCTCGAAACATTCTACCTCACTGTGAATATAATTGACCGATTCCTTTCAAGGAGGATGGTAACTAGGAGGGAACTTCAGCTAGTTGGCATTAGTTCCATGGTGATAGCATCCAAGTATGAGGAAGTTTGGGCTCCACAGGTTGAGGATTTTGTGTGCTTATCAGACTATACATATACCGGCAGTCAGATTCGTGCAATGGAGAAAGCAATCCTGGAGAAGTTGGGGTGGTATTTGACAGTTCCTACACCTTATGTCTTTCTTGCTAGATACATCAAAGCATCCATTTCACCTGATGATGAGATGAGGCATATGGTTTTCTTTCTAGCTGAACTTGGAGCCTTGGATTATCGAACAACCATACGGTACTCCCCATCCATGATAGCTGCTGCAGCCGTCTATGCTGCCCGCTGTACCCTCAACAAGAAGAGTTTCTGGACTGAAACTTTGAAGCACCACACTGGTTACTCTGAAGAACAGTTGAGGGAATGTGCCAAGGTCTTGGTTGGCTTTCACTTGAAGGCTGCTGAAAGTGATCTTAAAGCTGTTTATCGGAAATACTCAAAACCTGAATATGGTGCTGTTGCTGGTCTTACTCCTGCCAGAAGTTTTCAGTCCTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04114 ko04115 ko04218 ko04914 ko05166 map04068 map04110 map04114 map04115 map04218 map04914 map05166
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

420

Amino Acids

47.6

Weight (kDa)

9.06

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 169 - 292 5.2e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 294 - 412 1.4e-40 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 240, 600
AciI CCGC 1 cut(s) 1045
AcsI RAATTY 1 cut(s) 626
AcuI CTGAAG 2 cut(s) 698, 1128
AfaI GTAC 5 cut(s) 342, 491, 506, 1004, 1051
AfiI CCNNNNNNNGG 3 cut(s) 168, 344, 1211
AgsI TTSAA 5 cut(s) 378, 632, 687, 1087, 1156
AjnI CCWGG 1 cut(s) 849
AluBI AGCT 8 cut(s) 86, 251, 389, 458, 718, 965, 1022, 1181
AluI AGCT 8 cut(s) 86, 251, 389, 458, 718, 965, 1022, 1181
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 87
ApeKI GCWGC 8 cut(s) 248, 455, 534, 1022, 1025, 1028, 1040, 1160
ApoI RAATTY 1 cut(s) 626
ArsI GACNNNNNNTTYG 4 cut(s) 572, 604, 1066, 1098
Asp700I GAANNNNTTC 1 cut(s) 1067
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 99, 347
AsuHPI GGTGA 3 cut(s) 409, 751, 918
AsuII TTCGAA 1 cut(s) 578
AvaII GGWCC 2 cut(s) 99, 347
BanII GRGCYC 1 cut(s) 772
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 8 cut(s) 260, 467, 546, 1009, 1012, 1027, 1040, 1147
BccI CCATC 4 cut(s) 35, 524, 688, 1018
BceAI ACGGC 1 cut(s) 1016
BciT130I CCWGG 1 cut(s) 851
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 4 cut(s) 702, 719, 903, 962
BfmI CTRYAG 1 cut(s) 1026
BglII AGATCT 1 cut(s) 568
BisI GCNGC 8 cut(s) 249, 456, 535, 1023, 1026, 1029, 1041, 1161
BlsI GCNGC 8 cut(s) 250, 457, 536, 1024, 1027, 1030, 1042, 1162
Bme1390I CCNGG 1 cut(s) 851
Bme18I GGWCC 2 cut(s) 99, 347
BmgT120I GGNCC 2 cut(s) 99, 347
BmiI GGNNCC 3 cut(s) 74, 771, 976
BmrFI CCNGG 1 cut(s) 851
BmsI GCATC 2 cut(s) 755, 926
BpmI CTGGAG 1 cut(s) 872
Bpu14I TTCGAA 1 cut(s) 578
BsaJI CCNNGG 5 cut(s) 52, 350, 735, 978, 1131
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 344, 1211
Bse118I RCCGGY 1 cut(s) 815
Bse1I ACTGG 4 cut(s) 338, 480, 608, 1102
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 1 cut(s) 851
BseDI CCNNGG 5 cut(s) 52, 350, 735, 978, 1131
BseGI GGATG 6 cut(s) 46, 535, 699, 746, 917, 1010
BseLI CCNNNNNNNGG 3 cut(s) 168, 344, 1211
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 2 cut(s) 266, 279
BseNI ACTGG 4 cut(s) 338, 480, 608, 1102
BseXI GCAGC 8 cut(s) 260, 467, 546, 1009, 1012, 1027, 1040, 1147
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 2 cut(s) 9, 816
BslI CCNNNNNNNGG 3 cut(s) 168, 344, 1211
BsmAI GTCTC 1 cut(s) 87
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 231, 772
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 2 cut(s) 568, 1171
Bsp19I CCATGG 2 cut(s) 52, 735
BspACI CCGC 1 cut(s) 1045
BspCNI CTCAG 2 cut(s) 265, 280
BspHI TCATGA 1 cut(s) 1259
BspLI GGNNCC 3 cut(s) 74, 771, 976
BspMAI CTGCAG 1 cut(s) 1030
BspQI GCTCTTC 1 cut(s) 93
BspT104I TTCGAA 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 840
BsrFI RCCGGY 1 cut(s) 815
BsrGI TGTACA 1 cut(s) 504
BsrI ACTGG 4 cut(s) 338, 480, 608, 1102
BssAI RCCGGY 1 cut(s) 815
BssECI CCNNGG 5 cut(s) 52, 350, 735, 978, 1131
BssMI GATC 2 cut(s) 568, 1171
BssT1I CCWWGG 5 cut(s) 52, 350, 735, 978, 1131
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 5 cut(s) 189, 661, 877, 1002, 1116
Bst6I CTCTTC 3 cut(s) 93, 300, 1058
BstAPI GCANNNNNTGC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 504
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 335, 1045
BstDEI CTNAG 2 cut(s) 252, 288
BstDSI CCRYGG 2 cut(s) 52, 735
BstF5I GGATG 6 cut(s) 46, 535, 699, 746, 917, 1010
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 2 cut(s) 571, 1174
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 568, 1171
BstMWI GCNNNNNNNGC 4 cut(s) 200, 433, 1028, 1037
BstNI CCWGG 1 cut(s) 851
BstSCI CCNGG 1 cut(s) 849
BstSFI CTRYAG 1 cut(s) 1026
BstV1I GCAGC 8 cut(s) 260, 467, 546, 1009, 1012, 1027, 1040, 1147
BstX2I RGATCY 1 cut(s) 568
BstXI CCANNNNNNTGG 1 cut(s) 1138
BstYI RGATCY 1 cut(s) 568
BtgI CCRYGG 2 cut(s) 52, 735
BtsCI GGATG 6 cut(s) 46, 535, 699, 746, 917, 1010
BtsIMutI CAGTG 2 cut(s) 657, 1095
Cac8I GCNNGC 2 cut(s) 335, 1045
CciI TCATGA 1 cut(s) 1259
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 815
Cfr13I GGNCC 2 cut(s) 99, 347
CseI GACGC 1 cut(s) 461
Csp6I GTAC 5 cut(s) 341, 490, 505, 1003, 1050
CviAII CATG 6 cut(s) 53, 163, 179, 736, 1015, 1260
CviQI GTAC 5 cut(s) 341, 490, 505, 1003, 1050
DdeI CTNAG 2 cut(s) 252, 288
DpnI GATC 2 cut(s) 570, 1173
DpnII GATC 2 cut(s) 568, 1171
Eam1104I CTCTTC 3 cut(s) 93, 300, 1058
EarI CTCTTC 3 cut(s) 93, 300, 1058
Eco130I CCWWGG 5 cut(s) 52, 350, 735, 978, 1131
Eco24I GRGCYC 1 cut(s) 772
Eco47I GGWCC 2 cut(s) 99, 347
Eco57I CTGAAG 2 cut(s) 698, 1128
EcoRII CCWGG 1 cut(s) 849
EcoT14I CCWWGG 5 cut(s) 52, 350, 735, 978, 1131
EcoT38I GRGCYC 1 cut(s) 772
ErhI CCWWGG 5 cut(s) 52, 350, 735, 978, 1131
FaeI CATG 6 cut(s) 56, 166, 182, 739, 1018, 1263
FatI CATG 6 cut(s) 52, 162, 178, 735, 1014, 1259
FauI CCCGC 1 cut(s) 1052
FauNDI CATATG 1 cut(s) 948
FblI GTMKAC 2 cut(s) 240, 600
Fnu4HI GCNGC 8 cut(s) 249, 456, 535, 1023, 1026, 1029, 1041, 1161
FokI GGATG 6 cut(s) 53, 542, 706, 733, 904, 997
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 8 cut(s) 249, 456, 535, 1023, 1026, 1029, 1041, 1161
FspBI CTAG 4 cut(s) 702, 719, 903, 962
GlaI GCGC 1 cut(s) 268
GluI GCNGC 8 cut(s) 249, 456, 535, 1023, 1026, 1029, 1041, 1161
GsuI CTGGAG 1 cut(s) 872
HapII CCGG 2 cut(s) 9, 816
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 269
Hin1II CATG 6 cut(s) 56, 166, 182, 739, 1018, 1263
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HinfI GANTC 3 cut(s) 414, 678, 826
HpaII CCGG 2 cut(s) 9, 816
HphI GGTGA 3 cut(s) 409, 751, 918
Hpy166II GTNNAC 4 cut(s) 220, 241, 601, 619
Hpy188I TCNGA 6 cut(s) 150, 255, 802, 825, 1108, 1191
Hpy188III TCNNGA 3 cut(s) 92, 1072, 1260
Hpy8I GTNNAC 4 cut(s) 220, 241, 601, 619
HpyAV CCTTC 6 cut(s) 29, 63, 286, 304, 349, 1150
HpyCH4III ACNGT 5 cut(s) 189, 661, 877, 1002, 1116
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 3 cut(s) 203, 833, 1028
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 433, 1028, 1037
HpyF3I CTNAG 2 cut(s) 252, 288
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 6 cut(s) 56, 166, 182, 739, 1018, 1263
HspAI GCGC 1 cut(s) 267
Kzo9I GATC 2 cut(s) 568, 1171
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 3 cut(s) 11, 775, 974
Lsp1109I GCAGC 8 cut(s) 260, 467, 546, 1009, 1012, 1027, 1040, 1147
LweI GCATC 2 cut(s) 755, 926
MaeI CTAG 4 cut(s) 702, 719, 903, 962
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 5 cut(s) 283, 295, 415, 697, 1100
MalI GATC 2 cut(s) 570, 1173
MboI GATC 2 cut(s) 568, 1171
MboII GAAGA 7 cut(s) 80, 220, 317, 592, 1075, 1121, 1248
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 2 cut(s) 231, 772
MluCI AATT 4 cut(s) 500, 574, 626, 669
MlyI GAGTC 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 1067
MseI TTAA 2 cut(s) 573, 1176
MspA1I CMGCKG 2 cut(s) 458, 1047
MspI CCGG 2 cut(s) 9, 816
MspR9I CCNGG 1 cut(s) 851
MvaI CCWGG 1 cut(s) 851
MwoI GCNNNNNNNGC 4 cut(s) 200, 433, 1028, 1037
NcoI CCATGG 2 cut(s) 52, 735
NdeI CATATG 1 cut(s) 948
NdeII GATC 2 cut(s) 568, 1171
NlaIII CATG 6 cut(s) 56, 166, 182, 739, 1018, 1263
NlaIV GGNNCC 3 cut(s) 74, 771, 976
NmeAIII GCCGAG 1 cut(s) 563
NmuCI GTSAC 1 cut(s) 415
NspV TTCGAA 1 cut(s) 578
PagI TCATGA 1 cut(s) 1259
PciSI GCTCTTC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 1067
PfeI GAWTC 2 cut(s) 678, 826
PfoI TCCNGGA 1 cut(s) 849
PkrI GCNGC 8 cut(s) 250, 457, 536, 1024, 1027, 1030, 1042, 1162
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 849
PspGI CCWGG 1 cut(s) 849
PspN4I GGNNCC 3 cut(s) 74, 771, 976
PspPI GGNCC 2 cut(s) 99, 347
PstI CTGCAG 1 cut(s) 1030
PsuI RGATCY 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 5 cut(s) 342, 491, 506, 1004, 1051
RsaNI GTAC 5 cut(s) 341, 490, 505, 1003, 1050
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 573, 1176
SatI GCNGC 8 cut(s) 249, 456, 535, 1023, 1026, 1029, 1041, 1161
Sau3AI GATC 2 cut(s) 568, 1171
Sau96I GGNCC 2 cut(s) 99, 347
SchI GAGTC 1 cut(s) 423
ScrFI CCNGG 1 cut(s) 851
SduI GDGCHC 2 cut(s) 231, 772
SfaNI GCATC 2 cut(s) 755, 926
SfcI CTRYAG 1 cut(s) 1026
SfuI TTCGAA 1 cut(s) 578
SinI GGWCC 2 cut(s) 99, 347
Sse9I AATT 4 cut(s) 500, 574, 626, 669
SsiI CCGC 1 cut(s) 1045
SspMI CTAG 4 cut(s) 702, 719, 903, 962
StyD4I CCNGG 1 cut(s) 849
StyI CCWWGG 5 cut(s) 52, 350, 735, 978, 1131
TaaI ACNGT 5 cut(s) 189, 661, 877, 1002, 1116
TaiI ACGT 1 cut(s) 495
TaqI TCGA 6 cut(s) 91, 123, 391, 578, 642, 988
TaqII GACCGA 1 cut(s) 690
TasI AATT 4 cut(s) 500, 574, 626, 669
TatI WGTACW 2 cut(s) 340, 504
TfiI GAWTC 2 cut(s) 678, 826
Tru1I TTAA 2 cut(s) 573, 1176
Tru9I TTAA 2 cut(s) 573, 1176
TscAI CASTG 2 cut(s) 664, 1102
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 8 cut(s) 248, 455, 534, 1022, 1025, 1028, 1040, 1160
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 5 cut(s) 167, 318, 486, 513, 1248
TspRI CASTG 2 cut(s) 664, 1102
VpaK11BI GGWCC 2 cut(s) 99, 347
XapI RAATTY 1 cut(s) 626
XmiI GTMKAC 2 cut(s) 240, 600
XmnI GAANNNNTTC 1 cut(s) 1067
XspI CTAG 4 cut(s) 702, 719, 903, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.