Rorug05G0455600

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001255
Physical Location & Seq
Forward (+)
62910808 .. 62911556
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0455600.1

Sequence Viewer

Length: 411 bp
ATGGCCCGTACCAAGCAAACCGCCCGAAAGTCCACCGGAGGAAAGGCTCCACGTAAGCAGCTGGCCACCAAGGCCGCCCGGAAGTCTGCTCCGGCGACCGGAGGAGTGAAGAAGCCCCACCGTTTCAGGCCCGGAACTGTCGCCCTCAGGGAGATCAGGAAGTACCAGAAGAGCACTGAGCTTCTGATCCGCAAGCTTCCATTCCAGAGGCTTGTGAGGGAGATTGCTCAGGATTTCAAGACTGACCTTCGGTTCCAGAGCAGCGCCGTGGCTGCGCTTCAGGAGGCGGCGGAGGCTTACTTGGTGGGTCTGTTTGAGGACACCAATCTGTGTGCTATTCATGCCAAGAGAGTGACCATTATGCCCAAGGATATTCAGCTTGCCAGGAGGATTAGGGGCGAGAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 21, 75, 190, 287, 290
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 2 cut(s) 10, 164
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 4 cut(s) 61, 181, 196, 379
AluI AGCT 4 cut(s) 61, 181, 196, 379
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 1 cut(s) 181
AoxI GGCC 4 cut(s) 3, 63, 72, 128
ApeKI GCWGC 3 cut(s) 58, 261, 272
AspLEI GCGC 2 cut(s) 266, 277
AspS9I GGNCC 2 cut(s) 4, 129
AsuC2I CCSGG 2 cut(s) 79, 132
AxyI CCTNAGG 1 cut(s) 146
BalI TGGCCA 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 70, 259, 273
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 385
BcnI CCSGG 2 cut(s) 79, 132
BfoI RGCGCY 1 cut(s) 267
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 5 cut(s) 59, 75, 262, 273, 288
BlsI GCNGC 5 cut(s) 60, 76, 263, 274, 289
Bme1390I CCNGG 3 cut(s) 79, 132, 385
BmgT120I GGNCC 2 cut(s) 4, 129
BmiI GGNNCC 2 cut(s) 48, 254
BmrFI CCNGG 3 cut(s) 79, 132, 385
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 79, 132
BsaAI YACGTR 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 69, 267, 366
BsaWI WCCGGW 2 cut(s) 35, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse21I CCTNAGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 3 cut(s) 69, 267, 366
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 3 cut(s) 160, 168, 242
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 70, 259, 273
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 4 cut(s) 5, 65, 74, 130
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 5 cut(s) 36, 79, 92, 99, 132
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 4 cut(s) 5, 65, 74, 130
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 153, 186
BspACI CCGC 5 cut(s) 21, 75, 190, 287, 290
BspANI GGCC 4 cut(s) 5, 65, 74, 130
BspCNI CTCAG 3 cut(s) 159, 169, 241
BspLI GGNNCC 2 cut(s) 48, 254
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 69, 267, 366
BssMI GATC 2 cut(s) 153, 186
BssT1I CCWWGG 2 cut(s) 69, 366
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 2 cut(s) 122, 139
Bst6I CTCTTC 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 63, 194, 381
BstDEI CTNAG 3 cut(s) 146, 177, 228
BstDSI CCRYGG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 2 cut(s) 266, 277
BstKTI GATC 2 cut(s) 156, 189
BstMBI GATC 2 cut(s) 153, 186
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 3 cut(s) 77, 130, 383
BstV1I GCAGC 3 cut(s) 70, 259, 273
Bsu36I CCTNAGG 1 cut(s) 146
BsuRI GGCC 4 cut(s) 5, 65, 74, 130
BtgI CCRYGG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 63, 194, 381
CfoI GCGC 2 cut(s) 266, 277
Cfr13I GGNCC 2 cut(s) 4, 129
Csp6I GTAC 2 cut(s) 9, 163
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 3 cut(s) 146, 177, 228
DpnI GATC 2 cut(s) 155, 188
DpnII GATC 2 cut(s) 153, 186
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 69, 366
Eco57I CTGAAG 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 383
EcoT14I CCWWGG 2 cut(s) 69, 366
ErhI CCWWGG 2 cut(s) 69, 366
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Fsp4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
GlaI GCGC 2 cut(s) 265, 276
GluI GCNGC 5 cut(s) 59, 75, 262, 273, 288
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 4 cut(s) 5, 65, 74, 130
HapII CCGG 5 cut(s) 36, 79, 92, 99, 132
HhaI GCGC 2 cut(s) 266, 277
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 2 cut(s) 264, 275
HinP1I GCGC 2 cut(s) 264, 275
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 5 cut(s) 36, 79, 92, 99, 132
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 6 cut(s) 157, 205, 230, 238, 256, 281
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 122, 139
HpyCH4IV ACGT 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 3 cut(s) 146, 177, 228
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 2 cut(s) 264, 275
Kzo9I GATC 2 cut(s) 153, 186
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 52, 94
Lsp1109I GCAGC 3 cut(s) 70, 259, 273
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 352
MalI GATC 2 cut(s) 155, 188
MboI GATC 2 cut(s) 153, 186
MboII GAAGA 2 cut(s) 121, 181
MhlI GDGCHC 1 cut(s) 176
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 5 cut(s) 36, 79, 92, 99, 132
MspR9I CCNGG 3 cut(s) 79, 132, 385
MvaI CCWGG 1 cut(s) 385
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NciI CCSGG 2 cut(s) 79, 132
NdeII GATC 2 cut(s) 153, 186
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 48, 254
NmuCI GTSAC 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 164
PkrI GCNGC 5 cut(s) 60, 76, 263, 274, 289
Ppu21I YACGTR 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 48, 254
PspPI GGNCC 2 cut(s) 4, 129
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Sau3AI GATC 2 cut(s) 153, 186
Sau96I GGNCC 2 cut(s) 4, 129
ScrFI CCNGG 3 cut(s) 79, 132, 385
SduI GDGCHC 1 cut(s) 176
SetI ASST 6 cut(s) 55, 63, 183, 198, 249, 381
SfiI GGCCNNNNNGGCC 1 cut(s) 71
SsiI CCGC 5 cut(s) 21, 75, 190, 287, 290
StyD4I CCNGG 3 cut(s) 77, 130, 383
StyI CCWWGG 2 cut(s) 69, 366
TaaI ACNGT 2 cut(s) 122, 139
TaiI ACGT 1 cut(s) 55
TauI GCSGC 2 cut(s) 77, 290
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 3 cut(s) 58, 261, 272
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.