Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001255

Physical Location & Seq

Genomic Coordinates Reverse (-)

81717383 .. 81718979

Gene Structure 1597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022210

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAAATCGAATTTTAATGTATTTGCTCATGCTTGTTTTACTTGAAGGGAATGGTAAAGTCCAAGGAGAAGCACCAAGAAGGAACCAGCGAGTATCTCTTGAAGACAGGACCAACTTTGAGGCAGGTCAGGTCAAAATCGAAAGGAAGATTACTCGCCGCATTACAAGGAGTTTTCATGCCCAGCTGTTGGCAAATGCACAGAAGAACAATGGGAACCCGGTACTAGTGCCAGATGTTGTAGACAAGGCAGCTAAGAATAGAAATGATGCCCCTGCAAAGAAGGTTACCAAGTCAAGACTCACTTCGATTCTAACAGCTCGAAGCAAGGCTATGGCTTGTGGAGACACTAACAAACTAAAAGAGCAGATTGTGGATTTTGACACAGCTGATGTCAATGATGAACTAGCAGTTGTTGAATATGTCGATGAATTGTACAAGTTCTTCAAACTTGAAGAGGATGACTGCCGAGTTGGAGATTACATGGATACACAGCCAGATATCAATTCAAAGATGAGGTCTATCCTCATAGACTGGTTGATAGATGTCCACAGGAAATTTGAACTGATGCCTGAAACATTCTTCCTTACTGTGAATATAATTGACCGATTCCTTTCAAGGAGGATGGTAACTAGGAGGGAACTTCAGCTAGTCGGCATCAGTTCCATGGTGATAGCATCAAAGTATGAGGAAGTTTGGGCTCCACAGGAGGAATGTGTTAGATGGTTACAACATGGAGAAGACTTTTCTATAGTACTTGGGCTCTCTCCCTGTATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

261

Amino Acids

29.97

Weight (kDa)

6.37

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	146 - 237	2e-34	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27185 AT5G01800
fragaria_vesca	FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43460 FvH4_3g43460 FvH4_3g43460
malus_domestica	MD03G1022700.v1.1 MD03G1022800.v1.1 MD11G1027000.v1.1
prunus_persica	Prupe.6G021200_v2.0.a1 Prupe.6G021300_v2.0.a1
pyrus_communis	pycom03g01920 pycom11g02060
rosa_chinensis	RchiOBHm_Chr5g0077531 RchiOBHm_Chr5g0077551 RchiOBHm_Chr5g0077871 RchiOBHm_Chr7g0239321
rosa_laevigata	RLG00000000763 RLG00000006532 RLG00000013630 RLG00000017586 RLG00000022210 RLG00000028417 RLG00000036703 RLG00000036721
rosa_multiflora	Rmu_sc0001018.1_g000034 Rmu_sc0003058.1_g000003 Rmu_sc0004277.1_g000046 Rmu_sc0008456.1_g000002 Rmu_sc0031428.1_g000001 Rmu_ssc0000186.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004310 Rroxscaffold_1G00004440 Rroxscaffold_1G00004450 Rroxscaffold_3G00221010
rosa_rugosa	Rorug05G0455500 Rorug05G0455600 Rorug05G0456800.1 Rorug07G0327300 Rorug07G0327400
rosa_samantha	Rh5AG510200 Rh5AG511200 Rh5BG531900 Rh5BG533900 Rh5DG543900 Rh5DG544000 Rh5DG545300 Rh7AG480700
rosa_wichuraiana	Rw5G047290 Rw5G047440 Rw7G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	243
AciI	CCGC	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	12, 557
AcuI	CTGAAG	1 cut(s)	629
AfaI	GTAC	3 cut(s)	225, 437, 756
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	8 cut(s)	47, 104, 419, 448, 455, 510, 563, 618
AhlI	ACTAGT	1 cut(s)	226
AluBI	AGCT	5 cut(s)	187, 254, 320, 389, 649
AluI	AGCT	5 cut(s)	187, 254, 320, 389, 649
Alw26I	GTCTC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	12, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	111
BanII	GRGCYC	2 cut(s)	703, 765
BarI	GAAGNNNNNNTAC	2 cut(s)	428, 460
BbsI	GAAGAC	2 cut(s)	111, 747
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	619, 717
BciVI	GTATCC	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	339
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	5 cut(s)	227, 407, 633, 650, 781
BfmI	CTRYAG	1 cut(s)	750
BfuAI	ACCTGC	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	2 cut(s)	160, 252
BlsI	GCNGC	2 cut(s)	161, 253
BmcAI	AGTACT	1 cut(s)	756
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	3 cut(s)	86, 218, 702
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	4 cut(s)	259, 558, 666, 686
BpiI	GAAGAC	2 cut(s)	111, 747
BpuMI	CCSGG	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	64, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	64, 666
BseGI	GGATG	2 cut(s)	466, 630
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	539
BseXI	GCAGC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	703, 765
Bsp1407I	TGTACA	1 cut(s)	435
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	86, 218, 702
BspMI	ACCTGC	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	64, 666
BssT1I	CCWWGG	2 cut(s)	64, 666
Bst4CI	ACNGT	1 cut(s)	592
Bst6I	CTCTTC	1 cut(s)	450
BstAUI	TGTACA	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	666
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	466, 630
BstMAI	GTCTC	1 cut(s)	339
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	2 cut(s)	111, 747
BsuI	GTATCC	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	2 cut(s)	466, 630
BveI	ACCTGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	224, 436, 755
CviAII	CATG	5 cut(s)	31, 179, 484, 667, 734
CviQI	GTAC	3 cut(s)	224, 436, 755
DdeI	CTNAG	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco130I	CCWWGG	2 cut(s)	64, 666
Eco24I	GRGCYC	2 cut(s)	703, 765
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	629
Eco91I	GGTNACC	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	64, 666
EcoT38I	GRGCYC	2 cut(s)	703, 765
ErhI	CCWWGG	2 cut(s)	64, 666
FaeI	CATG	5 cut(s)	34, 182, 487, 670, 737
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FatI	CATG	5 cut(s)	30, 178, 483, 666, 733
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	160, 252
FokI	GGATG	2 cut(s)	473, 637
FriOI	GRGCYC	2 cut(s)	703, 765
Fsp4HI	GCNGC	2 cut(s)	160, 252
FspBI	CTAG	5 cut(s)	227, 407, 633, 650, 781
GluI	GCNGC	2 cut(s)	160, 252
GsaI	CCCAGC	1 cut(s)	187
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	5 cut(s)	34, 182, 487, 670, 737
HinfI	GANTC	3 cut(s)	300, 310, 609
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	2 cut(s)	244, 550
Hpy188III	TCNNGA	2 cut(s)	101, 297
Hpy8I	GTNNAC	2 cut(s)	244, 550
HpyAV	CCTTC	3 cut(s)	41, 75, 277
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4V	TGCA	2 cut(s)	200, 278
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	34, 182, 487, 670, 737
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	4 cut(s)	259, 558, 666, 686
MaeI	CTAG	5 cut(s)	227, 407, 633, 650, 781
MaeIII	GTNAC	3 cut(s)	286, 628, 726
MboII	GAAGA	7 cut(s)	116, 160, 217, 436, 467, 574, 752
MhlI	GDGCHC	2 cut(s)	703, 765
MluCI	AATT	5 cut(s)	12, 431, 505, 557, 600
MlyI	GAGTC	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	8 cut(s)	115, 451, 510, 536, 615, 630, 682, 703
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	2 cut(s)	187, 389
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	221
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	666
NlaIII	CATG	5 cut(s)	34, 182, 487, 670, 737
NlaIV	GGNNCC	3 cut(s)	86, 218, 702
NmeAIII	GCCGAG	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	310, 609
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	161, 253
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	86, 218, 702
PspPI	GGNCC	1 cut(s)	111
PvuII	CAGCTG	2 cut(s)	187, 389
RsaI	GTAC	3 cut(s)	225, 437, 756
RsaNI	GTAC	3 cut(s)	224, 436, 755
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	2 cut(s)	160, 252
Sau96I	GGNCC	1 cut(s)	111
ScaI	AGTACT	1 cut(s)	756
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	703, 765
SetI	ASST	9 cut(s)	130, 135, 189, 256, 288, 322, 391, 521, 651
SfaNI	GCATC	4 cut(s)	259, 558, 666, 686
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	1 cut(s)	111
SpeI	ACTAGT	1 cut(s)	226
Sse9I	AATT	5 cut(s)	12, 431, 505, 557, 600
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	5 cut(s)	227, 407, 633, 650, 781
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	64, 666
TaaI	ACNGT	1 cut(s)	592
TaqI	TCGA	5 cut(s)	10, 141, 308, 322, 426
TaqII	GACCGA	1 cut(s)	621
TasI	AATT	5 cut(s)	12, 431, 505, 557, 600
TatI	WGTACW	2 cut(s)	435, 754
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	310, 609
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	3 cut(s)	167, 417, 444
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	2 cut(s)	12, 557
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	5 cut(s)	227, 407, 633, 650, 781
ZrmI	AGTACT	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.