Rorug07G0327300

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001255
Physical Location & Seq
Forward (+)
35804359 .. 35807623
3265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0327300.1

Sequence Viewer

Length: 1002 bp
ATGGCAGGAGTTTCGAGTTCAAGCTCAACGATGGCAGAAGAGGAGCTAACGTTGACAGTCAAGTGGAGCGGGAAGGAGTACACGGTTCGAGTATGCGGCGACGACACTATGGGTGAGCTCAAGCGCCGAATCTGCCAACTCACCACCGTCTTGCCCAAACGCCAAAAGCTTCTGTACCCCAAACTCCTGCCTTCCAAACTCGCCGACGACGCCGTTTTGCTCTCCTCTCTCCCTTTCAAGTCCTCAGTCAAATTGACCATGATTGGTTCTATGGAGGATGATATTATAGTGGATCCCGTCGACTCTCCTGACATTGTTGATGACTTTGAGCTCGGCCAAGATGAGGCTGTTGATATCAAGGATGATCATGTTAATAACCAGAAATTGAGGAGGCGTATAGATCATTACAAGATTGAACTTAAGAATCCCTGCCGTCAAGGAAAGAAGCTGCTTGTGCTGGATATTGATTATACTCTCTTTGATCATCGGTCCACAGCAGAGAACCCACTTCAACTTATGCGACCTTATCTTCATGAGTTTCTGACAGCTGCTTATGCGGAATATGATATTATGATATGGTCTGCAACCAGCATCAAATGGGTTGAATTGAAGATGGGACAGCTTGGGGTACTCAACAATCCCAACTACAAAATCACTGCTCTTCTAGACCATTTAGCAATGATTACCGTTCAGTCAGATTCGCGTGGAATCTTTGATTGCAAGCCACTAGGCTTAATCTGGGCTCAATTCCCTGAGTTCTACAGTTCAAAAAACACTATAATGTTTGACGATCTGCGAAGAAATTTTGTGATGAACCCACAAAATGGTTTGGTCATCAAGCCGTTCAGGAAGGCCCATTCTAGCCGAGACAGTGATCAGGAGCTTATCAAACTCACATCATATTTGCTTGCCATTGCGGAACTTGATGATTTGAGCGCCCTTGATCATAATTCCTGGCAGTCATTTACTGAGGACAATGTCAAAAGACGTCGGCATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

333

Amino Acids

38.17

Weight (kDa)

5.69

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 18 - 59 2.9e-07 Ubiquitin family
NIF PF03031 149 - 311 8.7e-23 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 991
AccB7I CCANNNNNTGG 1 cut(s) 824
AccBSI CCGCTC 1 cut(s) 69
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 703
AciI CCGC 4 cut(s) 69, 96, 557, 917
AclI AACGTT 1 cut(s) 50
AclWI GGATC 2 cut(s) 287, 300
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 802
AcyI GRCGYC 2 cut(s) 210, 988
AfaI GTAC 3 cut(s) 80, 176, 630
AfiI CCNNNNNNNGG 2 cut(s) 343, 824
AflII CTTAAG 1 cut(s) 419
AgsI TTSAA 7 cut(s) 21, 238, 416, 512, 605, 610, 768
AjnI CCWGG 1 cut(s) 953
AluBI AGCT 9 cut(s) 24, 46, 118, 169, 331, 448, 548, 622, 883
AluI AGCT 9 cut(s) 24, 46, 118, 169, 331, 448, 548, 622, 883
Alw21I GWGCWC 2 cut(s) 120, 333
Alw26I GTCTC 1 cut(s) 861
AlwI GGATC 2 cut(s) 287, 300
AoxI GGCC 2 cut(s) 334, 852
ApeKI GCWGC 2 cut(s) 448, 548
ApoI RAATTY 1 cut(s) 802
AspLEI GCGC 2 cut(s) 126, 938
AspS9I GGNCC 2 cut(s) 489, 853
AsuHPI GGTGA 2 cut(s) 125, 133
AvaII GGWCC 1 cut(s) 489
BamHI GGATCC 1 cut(s) 292
BanII GRGCYC 3 cut(s) 120, 333, 745
Bbv12I GWGCWC 2 cut(s) 120, 333
BbvI GCAGC 2 cut(s) 435, 535
BccI CCATC 2 cut(s) 25, 607
BceAI ACGGC 3 cut(s) 197, 417, 826
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 955
BclI TGATCA 4 cut(s) 364, 481, 874, 943
BcoDI GTCTC 1 cut(s) 861
BfaI CTAG 3 cut(s) 665, 728, 861
BfmI CTRYAG 1 cut(s) 760
BfoI RGCGCY 2 cut(s) 127, 939
BfrI CTTAAG 1 cut(s) 419
BisI GCNGC 3 cut(s) 97, 449, 549
BlsI GCNGC 3 cut(s) 98, 450, 550
Bme1390I CCNGG 1 cut(s) 955
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 489, 853
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 955
BmsI GCATC 1 cut(s) 600
BpuEI CTTGAG 1 cut(s) 104
BsaHI GRCGYC 2 cut(s) 210, 988
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 824
Bse3DI GCAATG 2 cut(s) 684, 912
BseBI CCWGG 1 cut(s) 955
BseGI GGATG 2 cut(s) 283, 367
BseLI CCNNNNNNNGG 2 cut(s) 343, 824
BseMI GCAATG 2 cut(s) 684, 912
BseMII CTCAG 3 cut(s) 258, 744, 960
BseRI GAGGAG 3 cut(s) 56, 214, 403
BseXI GCAGC 2 cut(s) 435, 535
Bsh1236I CGCG 1 cut(s) 703
BshFI GGCC 2 cut(s) 336, 854
BsiHKAI GWGCWC 2 cut(s) 120, 333
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 2 cut(s) 343, 824
BsmAI GTCTC 1 cut(s) 861
BsmFI GGGAC 1 cut(s) 630
BsnI GGCC 2 cut(s) 336, 854
Bsp1286I GDGCHC 3 cut(s) 120, 333, 745
Bsp143I GATC 7 cut(s) 292, 364, 400, 481, 790, 874, 943
BspACI CCGC 4 cut(s) 69, 96, 557, 917
BspANI GGCC 2 cut(s) 336, 854
BspCNI CTCAG 3 cut(s) 257, 745, 961
BspFNI CGCG 1 cut(s) 703
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 2 cut(s) 287, 300
BspQI GCTCTTC 1 cut(s) 666
BspTI CTTAAG 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 2 cut(s) 684, 912
BssMI GATC 7 cut(s) 292, 364, 400, 481, 790, 874, 943
BssNI GRCGYC 2 cut(s) 210, 988
Bst2UI CCWGG 1 cut(s) 955
Bst4CI ACNGT 6 cut(s) 58, 85, 148, 688, 764, 872
Bst6I CTCTTC 2 cut(s) 33, 666
BstACI GRCGYC 2 cut(s) 210, 988
BstAFI CTTAAG 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 722, 909
BstDEI CTNAG 3 cut(s) 244, 753, 969
BstF5I GGATG 2 cut(s) 283, 367
BstFNI CGCG 1 cut(s) 703
BstH2I RGCGCY 2 cut(s) 127, 939
BstHHI GCGC 2 cut(s) 126, 938
BstKTI GATC 7 cut(s) 295, 367, 403, 484, 793, 877, 946
BstMAI GTCTC 1 cut(s) 861
BstMBI GATC 7 cut(s) 292, 364, 400, 481, 790, 874, 943
BstMWI GCNNNNNNNGC 4 cut(s) 132, 209, 454, 554
BstNI CCWGG 1 cut(s) 955
BstSCI CCNGG 1 cut(s) 953
BstSFI CTRYAG 1 cut(s) 760
BstUI CGCG 1 cut(s) 703
BstV1I GCAGC 2 cut(s) 435, 535
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BsuRI GGCC 2 cut(s) 336, 854
BtsCI GGATG 2 cut(s) 283, 367
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 2 cut(s) 654, 877
Cac8I GCNNGC 2 cut(s) 722, 909
CciI TCATGA 1 cut(s) 532
CfoI GCGC 2 cut(s) 126, 938
Cfr13I GGNCC 2 cut(s) 489, 853
CseI GACGC 1 cut(s) 218
Csp6I GTAC 3 cut(s) 79, 175, 629
CviAII CATG 4 cut(s) 259, 368, 533, 995
CviQI GTAC 3 cut(s) 79, 175, 629
DdeI CTNAG 3 cut(s) 244, 753, 969
DpnI GATC 7 cut(s) 294, 366, 402, 483, 792, 876, 945
DpnII GATC 7 cut(s) 292, 364, 400, 481, 790, 874, 943
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 33, 666
EarI CTCTTC 2 cut(s) 33, 666
Ecl136II GAGCTC 2 cut(s) 118, 331
Eco24I GRGCYC 3 cut(s) 120, 333, 745
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 489
Eco53kI GAGCTC 2 cut(s) 118, 331
EcoICRI GAGCTC 2 cut(s) 118, 331
EcoRII CCWGG 1 cut(s) 953
EcoRV GATATC 1 cut(s) 355
EcoT38I GRGCYC 3 cut(s) 120, 333, 745
FaeI CATG 4 cut(s) 262, 371, 536, 998
FaqI GGGAC 1 cut(s) 630
FatI CATG 4 cut(s) 258, 367, 532, 994
FauI CCCGC 1 cut(s) 62
FbaI TGATCA 4 cut(s) 364, 481, 874, 943
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 97, 449, 549
FokI GGATG 2 cut(s) 290, 374
FriOI GRGCYC 3 cut(s) 120, 333, 745
Fsp4HI GCNGC 3 cut(s) 97, 449, 549
FspBI CTAG 3 cut(s) 665, 728, 861
GlaI GCGC 2 cut(s) 125, 937
GluI GCNGC 3 cut(s) 97, 449, 549
HaeII RGCGCY 2 cut(s) 127, 939
HaeIII GGCC 2 cut(s) 336, 854
HgaI GACGC 1 cut(s) 218
HhaI GCGC 2 cut(s) 126, 938
Hin1I GRCGYC 2 cut(s) 210, 988
Hin1II CATG 4 cut(s) 262, 371, 536, 998
Hin6I GCGC 2 cut(s) 124, 936
HinP1I GCGC 2 cut(s) 124, 936
HincII GTYRAC 2 cut(s) 54, 301
HindII GTYRAC 2 cut(s) 54, 301
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 5 cut(s) 129, 302, 424, 698, 708
HphI GGTGA 2 cut(s) 125, 133
Hpy166II GTNNAC 4 cut(s) 54, 81, 301, 492
Hpy188I TCNGA 2 cut(s) 543, 697
Hpy188III TCNNGA 5 cut(s) 308, 533, 665, 847, 878
Hpy8I GTNNAC 4 cut(s) 54, 81, 301, 492
Hpy99I CGWCG 5 cut(s) 104, 209, 212, 302, 993
HpyAV CCTTC 3 cut(s) 67, 201, 844
HpyCH4III ACNGT 6 cut(s) 58, 85, 148, 688, 764, 872
HpyCH4IV ACGT 2 cut(s) 50, 988
HpyCH4V TGCA 2 cut(s) 584, 720
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 209, 454, 554
HpyF3I CTNAG 3 cut(s) 244, 753, 969
HpySE526I ACGT 2 cut(s) 50, 988
Hsp92I GRCGYC 2 cut(s) 210, 988
Hsp92II CATG 4 cut(s) 262, 371, 536, 998
HspAI GCGC 2 cut(s) 124, 936
Ksp22I TGATCA 4 cut(s) 364, 481, 874, 943
Kzo9I GATC 7 cut(s) 292, 364, 400, 481, 790, 874, 943
LguI GCTCTTC 1 cut(s) 666
LmnI GCTCC 3 cut(s) 43, 66, 880
Lsp1109I GCAGC 2 cut(s) 435, 535
LweI GCATC 1 cut(s) 600
MaeI CTAG 3 cut(s) 665, 728, 861
MaeII ACGT 2 cut(s) 50, 988
MalI GATC 7 cut(s) 294, 366, 402, 483, 792, 876, 945
MbiI CCGCTC 1 cut(s) 69
MboI GATC 7 cut(s) 292, 364, 400, 481, 790, 874, 943
MboII GAAGA 5 cut(s) 50, 521, 622, 653, 810
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 3 cut(s) 120, 333, 745
MluCI AATT 6 cut(s) 251, 383, 605, 746, 802, 949
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 8 cut(s) 34, 235, 253, 268, 337, 381, 384, 964
MseI TTAA 3 cut(s) 372, 420, 734
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 548
MspCI CTTAAG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 955
MvaI CCWGG 1 cut(s) 955
MvnI CGCG 1 cut(s) 703
MwoI GCNNNNNNNGC 4 cut(s) 132, 209, 454, 554
NdeII GATC 7 cut(s) 292, 364, 400, 481, 790, 874, 943
NlaIII CATG 4 cut(s) 262, 371, 536, 998
NlaIV GGNNCC 1 cut(s) 294
NmeAIII GCCGAG 2 cut(s) 312, 890
PagI TCATGA 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 666
PfeI GAWTC 4 cut(s) 129, 424, 698, 708
PflFI GACNNNGTC 1 cut(s) 977
PflMI CCANNNNNTGG 1 cut(s) 824
PkrI GCNGC 3 cut(s) 98, 450, 550
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp124BI GAGCTC 2 cut(s) 120, 333
Psp1406I AACGTT 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 953
PspGI CCWGG 1 cut(s) 953
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 2 cut(s) 489, 853
PsuI RGATCY 1 cut(s) 292
PsyI GACNNNGTC 1 cut(s) 977
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 3 cut(s) 80, 176, 630
RsaNI GTAC 3 cut(s) 79, 175, 629
RseI CAYNNNNRTG 1 cut(s) 779
SacI GAGCTC 2 cut(s) 120, 333
SalI GTCGAC 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 666
SaqAI TTAA 3 cut(s) 372, 420, 734
SatI GCNGC 3 cut(s) 97, 449, 549
Sau3AI GATC 7 cut(s) 292, 364, 400, 481, 790, 874, 943
Sau96I GGNCC 2 cut(s) 489, 853
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 955
SduI GDGCHC 3 cut(s) 120, 333, 745
SfaNI GCATC 1 cut(s) 600
SfcI CTRYAG 1 cut(s) 760
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 2 cut(s) 119, 419
SmoI CTYRAG 2 cut(s) 119, 419
Sse9I AATT 6 cut(s) 251, 383, 605, 746, 802, 949
SsiI CCGC 4 cut(s) 69, 96, 557, 917
SspMI CTAG 3 cut(s) 665, 728, 861
SstI GAGCTC 2 cut(s) 120, 333
StyD4I CCNGG 1 cut(s) 953
TaaI ACNGT 6 cut(s) 58, 85, 148, 688, 764, 872
TaiI ACGT 2 cut(s) 53, 991
TaqI TCGA 3 cut(s) 14, 88, 300
TaqII GACCGA 1 cut(s) 477
TasI AATT 6 cut(s) 251, 383, 605, 746, 802, 949
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 4 cut(s) 129, 424, 698, 708
Tru1I TTAA 3 cut(s) 372, 420, 734
Tru9I TTAA 3 cut(s) 372, 420, 734
TscAI CASTG 2 cut(s) 661, 877
TseI GCWGC 2 cut(s) 448, 548
TspDTI ATGAA 2 cut(s) 521, 827
TspRI CASTG 2 cut(s) 661, 877
Tth111I GACNNNGTC 1 cut(s) 977
Van91I CCANNNNNTGG 1 cut(s) 824
Vha464I CTTAAG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 1 cut(s) 802
XbaI TCTAGA 1 cut(s) 664
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 3 cut(s) 665, 728, 861
ZraI GACGTC 1 cut(s) 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.