RLG00000017586

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001255
Physical Location & Seq
Forward (+)
18545889 .. 18546778
890 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017586

Sequence Viewer

Length: 597 bp
ATGCTTGTTTTACTTGAAGGGAATGGTAAAGTCCAAGGAGAAGCACCAAGAAGGAACCAGCGAGTATCTCTTGAAGACAGGACCAACTTTGAGGCAGGTCAGGTCAAAATCGAAAGGAAGATTACTCGCCACATTACAAGGAGTTTTCATGCCCAGCTGTTGGCAAATGCACAGAAGAACAATGGGAACCCGGTACTAGTGCCAGGTGTTGTAGACAAGGCAGCTAAGAATAGAAATGATGCCCCTGCAAAGAAGGTTACCAAGTCAAGACTCACTTCGATTCTAACAGCTCGAAGCAAGGCTATGGCTTGTGGAGACACTAACAAACTAAAAGAGCAGATTGTGGATTTTGACACAGCTGATGTCAATGATGAACTAGCAGTTGTTGAATATGTCGATGAATTGTACAAGTTCTTCAAACTTGAAGAGGATGACTGCCGAGTTGGAGATTACATGGATACACAGCCAGATATCAATTCAAAGATGAGGTCTATCCTCATAGACTGGTTGATAGATGTCCACAGGAAATTTGAACTGATGCCTGAAACATTCTACCTTACTGTGAATATAATTGACCCCTTTACACATCGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

199

Amino Acids

22.61

Weight (kDa)

6.91

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 136 - 196 8.3e-18 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 160
AccI GTMKAC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 527
AfaI GTAC 2 cut(s) 195, 407
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 7 cut(s) 17, 74, 389, 418, 425, 480, 533
AhlI ACTAGT 1 cut(s) 196
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 4 cut(s) 157, 224, 290, 359
AluI AGCT 4 cut(s) 157, 224, 290, 359
Alw26I GTCTC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 221, 591
ApoI RAATTY 1 cut(s) 527
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AspS9I GGNCC 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 81
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 233, 578
BciT130I CCWGG 1 cut(s) 204
BciVI GTATCC 1 cut(s) 451
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 309
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 2 cut(s) 197, 377
BfuAI ACCTGC 1 cut(s) 86
BfuI GTATCC 1 cut(s) 451
BisI GCNGC 2 cut(s) 222, 592
BlsI GCNGC 2 cut(s) 223, 593
Bme1390I CCNGG 2 cut(s) 191, 204
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 56, 188
BmrFI CCNGG 2 cut(s) 191, 204
BmsI GCATC 2 cut(s) 229, 528
BpiI GAAGAC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 509
BseXI GCAGC 2 cut(s) 233, 578
BseYI CCCAGC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 309
Bsp1407I TGTACA 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 56, 188
BspMI ACCTGC 1 cut(s) 86
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 1 cut(s) 420
BstAUI TGTACA 1 cut(s) 405
BstDEI CTNAG 1 cut(s) 225
BstEII GGTNACC 1 cut(s) 256
BstF5I GGATG 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 309
BstNI CCWGG 1 cut(s) 204
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 189, 202
BstV1I GCAGC 2 cut(s) 233, 578
BstV2I GAAGAC 1 cut(s) 81
BsuI GTATCC 1 cut(s) 451
BtgZI GCGATG 1 cut(s) 572
BtsCI GGATG 1 cut(s) 436
BveI ACCTGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 194, 406
CviAII CATG 2 cut(s) 149, 454
CviJI RGCY 7 cut(s) 157, 224, 290, 302, 308, 359, 466
CviKI_1 RGCY 7 cut(s) 157, 224, 290, 302, 308, 359, 466
CviQI GTAC 2 cut(s) 194, 406
DdeI CTNAG 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 34
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 81
Eco91I GGTNACC 1 cut(s) 256
EcoO65I GGTNACC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 202
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 2 cut(s) 152, 457
FaiI YATR 6 cut(s) 150, 305, 393, 455, 500, 569
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FatI CATG 2 cut(s) 148, 453
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 222, 592
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 2 cut(s) 222, 592
FspBI CTAG 2 cut(s) 197, 377
GluI GCNGC 2 cut(s) 222, 592
GsaI CCCAGC 1 cut(s) 157
HapII CCGG 1 cut(s) 191
Hin1II CATG 2 cut(s) 152, 457
HinfI GANTC 2 cut(s) 270, 280
HpaII CCGG 1 cut(s) 191
Hpy166II GTNNAC 2 cut(s) 214, 520
Hpy188III TCNNGA 2 cut(s) 71, 267
Hpy8I GTNNAC 2 cut(s) 214, 520
HpyAV CCTTC 3 cut(s) 11, 45, 247
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4V TGCA 2 cut(s) 170, 248
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 2 cut(s) 152, 457
Lsp1109I GCAGC 2 cut(s) 233, 578
LweI GCATC 2 cut(s) 229, 528
MaeI CTAG 2 cut(s) 197, 377
MaeIII GTNAC 1 cut(s) 256
MboII GAAGA 5 cut(s) 86, 130, 187, 406, 437
MluCI AATT 4 cut(s) 401, 475, 527, 570
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 4 cut(s) 85, 421, 480, 506
MspA1I CMGCKG 2 cut(s) 157, 359
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 191, 204
MvaI CCWGG 1 cut(s) 204
NciI CCSGG 1 cut(s) 191
NlaIII CATG 2 cut(s) 152, 457
NlaIV GGNNCC 2 cut(s) 56, 188
NmeAIII GCCGAG 1 cut(s) 464
PfeI GAWTC 1 cut(s) 280
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 2 cut(s) 223, 593
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 202
PspEI GGTNACC 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 56, 188
PspPI GGNCC 1 cut(s) 81
PvuII CAGCTG 2 cut(s) 157, 359
RsaI GTAC 2 cut(s) 195, 407
RsaNI GTAC 2 cut(s) 194, 406
SatI GCNGC 2 cut(s) 222, 592
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 2 cut(s) 191, 204
SfaNI GCATC 2 cut(s) 229, 528
SinI GGWCC 1 cut(s) 81
SpeI ACTAGT 1 cut(s) 196
Sse9I AATT 4 cut(s) 401, 475, 527, 570
SspMI CTAG 2 cut(s) 197, 377
StyD4I CCNGG 2 cut(s) 189, 202
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 562
TaqI TCGA 4 cut(s) 111, 278, 292, 396
TasI AATT 4 cut(s) 401, 475, 527, 570
TatI WGTACW 1 cut(s) 405
TfiI GAWTC 1 cut(s) 280
TseI GCWGC 2 cut(s) 221, 591
TspDTI ATGAA 3 cut(s) 137, 387, 414
Van91I CCANNNNNTGG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 197, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.