RLG00000013630

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001255
Physical Location & Seq
Forward (+)
34387312 .. 34388690
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013630

Sequence Viewer

Length: 456 bp
ATGGCCGATTCGTCGTCGGTCGATTTGCCGCCGTCCGATAGTATTTACTTCACCGTTGGGATCATGAACAAAAGCTCGATGTTGATCAATTCCAGAATGTTCATTCTTGCCGGGACGGGCTTTCGGGTACGGGTTCGGTTTCTTGCCTTGGGGAATGGTAAAGTCCAAGGAGAAGCACCAAGAAGGAACCAGCGAGTATCTCTTGAAGACAGGACCAACTTTGAGGCAGGTCAGGTCAAAATCGAAAGGAAGATTACTCGCCGCATTACAAGGAGTTTTCATGCCCAGCTGTTGGCAAATGCACAGAAGAACAATGGGAACCCGGTACTAGTGCCAGGTGTTGTAGACAAGGCAGCTAAGAATAGAAATGATGCCCCTGCAAAGAAGGTTACCAAGTCAAGACTCACTTCGATTCTAACAGCTCGAAGCAAGGTGAGCTTAGAAGTTGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

152

Amino Acids

16.63

Weight (kDa)

11.31

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 292
AccI GTMKAC 1 cut(s) 345
AciI CCGC 2 cut(s) 29, 262
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 129, 327
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 1 cut(s) 206
AhlI ACTAGT 1 cut(s) 328
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 5 cut(s) 75, 289, 356, 422, 438
AluI AGCT 5 cut(s) 75, 289, 356, 422, 438
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 213
AsuC2I CCSGG 2 cut(s) 112, 323
AsuHPI GGTGA 2 cut(s) 43, 445
AvaII GGWCC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 1 cut(s) 84
BcnI CCSGG 2 cut(s) 112, 323
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 1 cut(s) 329
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 3 cut(s) 29, 262, 354
BlsI GCNGC 3 cut(s) 30, 263, 355
Bme1390I CCNGG 3 cut(s) 112, 323, 336
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 188, 320
BmrFI CCNGG 3 cut(s) 112, 323, 336
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 213
BpuMI CCSGG 2 cut(s) 112, 323
BsaBI GATNNNNATC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 147, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 147, 166
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 292
BseXI GCAGC 1 cut(s) 365
BseYI CCCAGC 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 21
BsiSI CCGG 2 cut(s) 111, 323
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 60, 84
BspACI CCGC 2 cut(s) 29, 262
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 188, 320
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 147, 166
BssMI GATC 2 cut(s) 60, 84
BssT1I CCWWGG 2 cut(s) 147, 166
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 357, 439
BstEII GGTNACC 1 cut(s) 388
BstKTI GATC 2 cut(s) 63, 87
BstMBI GATC 2 cut(s) 60, 84
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNI CCWGG 1 cut(s) 336
BstPI GGTNACC 1 cut(s) 388
BstSCI CCNGG 3 cut(s) 110, 321, 334
BstV1I GCAGC 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 5
BveI ACCTGC 1 cut(s) 218
CciI TCATGA 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 128, 326
CviAII CATG 2 cut(s) 64, 281
CviJI RGCY 7 cut(s) 5, 75, 120, 289, 356, 422, 438
CviKI_1 RGCY 7 cut(s) 5, 75, 120, 289, 356, 422, 438
CviQI GTAC 2 cut(s) 128, 326
DdeI CTNAG 2 cut(s) 357, 439
DpnI GATC 2 cut(s) 62, 86
DpnII GATC 2 cut(s) 60, 84
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 147, 166
Eco47I GGWCC 1 cut(s) 213
Eco91I GGTNACC 1 cut(s) 388
EcoO65I GGTNACC 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 147, 166
ErhI CCWWGG 2 cut(s) 147, 166
FaeI CATG 2 cut(s) 67, 284
FaiI YATR 2 cut(s) 65, 282
FalI AAGNNNNNCTT 4 cut(s) 391, 423, 422, 454
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 63, 280
FbaI TGATCA 1 cut(s) 84
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 29, 262, 354
Fsp4HI GCNGC 3 cut(s) 29, 262, 354
FspBI CTAG 1 cut(s) 329
GluI GCNGC 3 cut(s) 29, 262, 354
GsaI CCCAGC 1 cut(s) 289
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 111, 323
Hin1II CATG 2 cut(s) 67, 284
HinfI GANTC 3 cut(s) 8, 402, 412
HpaII CCGG 2 cut(s) 111, 323
HphI GGTGA 2 cut(s) 43, 445
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 4 cut(s) 64, 93, 203, 399
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 2 cut(s) 177, 379
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 302, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 2 cut(s) 357, 439
Hsp92II CATG 2 cut(s) 67, 284
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 2 cut(s) 60, 84
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 62, 86
MboI GATC 2 cut(s) 60, 84
MboII GAAGA 3 cut(s) 218, 262, 319
MluCI AATT 1 cut(s) 88
MlyI GAGTC 1 cut(s) 396
MnlI CCTC 1 cut(s) 217
MseI TTAA 1 cut(s) 454
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 2 cut(s) 111, 323
MspR9I CCNGG 3 cut(s) 112, 323, 336
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 435
NciI CCSGG 2 cut(s) 112, 323
NdeII GATC 2 cut(s) 60, 84
NlaIII CATG 2 cut(s) 67, 284
NlaIV GGNNCC 2 cut(s) 188, 320
PagI TCATGA 1 cut(s) 63
PfeI GAWTC 2 cut(s) 8, 412
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 3 cut(s) 30, 263, 355
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 334
PspEI GGTNACC 1 cut(s) 388
PspFI CCCAGC 1 cut(s) 285
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 188, 320
PspPI GGNCC 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 2 cut(s) 129, 327
RsaNI GTAC 2 cut(s) 128, 326
SaqAI TTAA 1 cut(s) 454
SatI GCNGC 3 cut(s) 29, 262, 354
Sau3AI GATC 2 cut(s) 60, 84
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 3 cut(s) 112, 323, 336
SfaNI GCATC 1 cut(s) 361
SinI GGWCC 1 cut(s) 213
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 1 cut(s) 88
SsiI CCGC 2 cut(s) 29, 262
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 3 cut(s) 110, 321, 334
StyI CCWWGG 2 cut(s) 147, 166
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 5 cut(s) 21, 77, 243, 410, 424
TaqII GACCGA 1 cut(s) 7
TasI AATT 1 cut(s) 88
TauI GCSGC 2 cut(s) 31, 264
TfiI GAWTC 2 cut(s) 8, 412
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 3 cut(s) 80, 91, 269
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 213
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.