MD03G1022800.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0001255
Physical Location & Seq
Forward (+)
1808738 .. 1811652
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1022800.v1.1.491

Sequence Viewer

Length: 1242 bp
ATGGAGGAAGCCAGAGTCAGAACAGGGGTTGTTCCGCCTCCACCCAAAGGTGGTGATGGACTCATAAATAACAGGCGAGTTCTTCAGGACATTGGCAATCGACCCATCACTAGAAGTTTTCGTGCGCAACTGATAGCAAAAGCACAAGAAAAAGGAGTTAAAACTGTGAACCCTGTGGTGCTGCCGGTTCTTGAAGATAAGGTAGCTCTCAATCGAAAGCGTGTTCCTACCCAGAAGGTGGTTCCCAGGAAGGAAATTGAAAAGCAGGCACCAGAGGATTTGGTGATTATAAGTTCTGATGAAGAAGAAAAGGATAAATCTGTAGAAGGGCGGAAGGAAGTCAAGACTCTGACTTCGATCCTCACAGCCCGAAGCAAGGCCATGGCTCTTGGAGTGAACATCAAGCCAAAAGAAAAGATTGTTGAAATAGATTCAGCCGATGTCAACGATGAATTAGCAGTGGTTGAATACATTGATGACTTGTACAAGTTCTACAAGCTCACTGAAGATGATAGCCGAGTTCATGACTACATGGACTCGCAGCCAGATATAAATACAAAGATGAGATCAATCCTCATAGACTGGTTGATAGATGTTCATCGGAAATTTGAACTGATGCCTGAAACCTTCTACCTGACTGTGAACATACTTGATCGATACCTTTCGAAGAAGATCGTTTCTAGGAGGGAACTTCAGCTAGTTGGCATTAGTTCCATGGTCATAGCATCCAAATATGAAGAAATCTGGGCTCCACAGGTCAATGACTTTGTTTGCTTGTCAGACTATGCATACACTGCCAATCAGATACTGCGCATGGAGAAAGCAATTCTGGGGAAGCTGGAGTGGTATCTGACAGTTCCAACCCCTTATGTCTTCCTGTCTCGATACATCAAAGCATCTGTTTCGCCTGACGTGGAGATGAAGAACATGGTTTTCTTTCTAGCTGAGCTCGGAATCCTGCATTATCCGACTATCATTCTGTACTCCCCATCCATGATATCTGCTGCCGCTGTCTATGCTGCACGTTATACTCTGAATAAGATTCCTGTCTGGACTGAAACTTTGAAGCACCACACTGGCCACTCTGAAGAACAGTTGAGGGACTGTGCCAAGCTCTTGGTTGGCCTTCACTCGAATTCTGCAGAAAGTAAACTTCAAGCAGTTTACCGGAAATTCTCAAGACCAGAGTATGGTGCTGTTGCTCTTTTTGTTCCAGCCAAAAGTTTTCACTCATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

414

Amino Acids

46.97

Weight (kDa)

8.68

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 160 - 285 6.4e-49 Cyclin, N-terminal domain
Cyclin_C PF02984 287 - 405 7.2e-37 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
Acc16I TGCGCA 2 cut(s) 126, 812
AccB1I GGYRCC 1 cut(s) 268
AccB7I CCANNNNNTGG 2 cut(s) 238, 1190
AciI CCGC 3 cut(s) 35, 331, 1008
AclWI GGATC 1 cut(s) 352
AcoI YGGCCR 1 cut(s) 1078
AcsI RAATTY 3 cut(s) 605, 1135, 1172
AcuI CTGAAG 4 cut(s) 68, 525, 677, 1107
AfaI GTAC 2 cut(s) 485, 983
AfiI CCNNNNNNNGG 5 cut(s) 47, 50, 238, 376, 1190
AgsI TTSAA 7 cut(s) 194, 260, 425, 467, 611, 1066, 1157
AjiI CACGTC 1 cut(s) 913
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 7 cut(s) 206, 499, 697, 838, 944, 949, 1114
AluI AGCT 7 cut(s) 206, 499, 697, 838, 944, 949, 1114
Alw21I GWGCWC 1 cut(s) 951
Alw26I GTCTC 1 cut(s) 885
AlwI GGATC 1 cut(s) 352
AlwNI CAGNNNCTG 1 cut(s) 808
AoxI GGCC 3 cut(s) 378, 1078, 1123
ApeKI GCWGC 4 cut(s) 181, 541, 1004, 1019
ApoI RAATTY 3 cut(s) 605, 1135, 1172
ArsI GACNNNNNNTTYG 4 cut(s) 337, 369, 1045, 1077
AspLEI GCGC 2 cut(s) 127, 813
AsuHPI GGTGA 2 cut(s) 65, 295
AsuII TTCGAA 1 cut(s) 665
BalI TGGCCA 1 cut(s) 1080
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 751, 951
BbsI GAAGAC 1 cut(s) 865
Bbv12I GWGCWC 1 cut(s) 951
BbvI GCAGC 4 cut(s) 168, 553, 991, 1006
BccI CCATC 3 cut(s) 50, 113, 997
BcgI CGANNNNNNTGC 2 cut(s) 885, 919
BciT130I CCWGG 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 885
BfaI CTAG 4 cut(s) 111, 681, 698, 941
BfmI CTRYAG 2 cut(s) 321, 1140
BisI GCNGC 5 cut(s) 182, 542, 1005, 1008, 1020
BlpI GCTNAGC 1 cut(s) 945
BlsI GCNGC 5 cut(s) 183, 543, 1006, 1009, 1021
Bme1390I CCNGG 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 913
BmiI GGNNCC 3 cut(s) 243, 270, 750
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 3 cut(s) 606, 734, 905
BpiI GAAGAC 1 cut(s) 865
BpmI CTGGAG 1 cut(s) 860
Bpu1102I GCTNAGC 1 cut(s) 945
Bpu14I TTCGAA 1 cut(s) 665
BpuEI CTTGAG 1 cut(s) 1162
Bsa29I ATCGAT 1 cut(s) 655
BsaBI GATNNNNATC 1 cut(s) 597
BsaJI CCNNGG 3 cut(s) 245, 381, 714
BsaWI WCCGGW 1 cut(s) 1167
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 50, 238, 376, 1190
Bse118I RCCGGY 1 cut(s) 184
Bse1I ACTGG 2 cut(s) 587, 1081
Bse8I GATNNNNATC 1 cut(s) 597
BseBI CCWGG 1 cut(s) 247
BseCI ATCGAT 1 cut(s) 655
BseDI CCNNGG 3 cut(s) 245, 381, 714
BseGI GGATG 2 cut(s) 725, 989
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 5 cut(s) 47, 50, 238, 376, 1190
BseMII CTCAG 1 cut(s) 936
BseNI ACTGG 2 cut(s) 587, 1081
BseXI GCAGC 4 cut(s) 168, 553, 991, 1006
BsgI GTGCAG 1 cut(s) 1005
BshFI GGCC 3 cut(s) 380, 1080, 1125
BshNI GGYRCC 1 cut(s) 268
BshVI ATCGAT 1 cut(s) 655
BsiHKAI GWGCWC 1 cut(s) 951
BsiSI CCGG 2 cut(s) 185, 1168
BslFI GGGAC 1 cut(s) 1115
BslI CCNNNNNNNGG 5 cut(s) 47, 50, 238, 376, 1190
BsmAI GTCTC 1 cut(s) 885
BsmFI GGGAC 1 cut(s) 1115
BsnI GGCC 3 cut(s) 380, 1080, 1125
Bsp119I TTCGAA 1 cut(s) 665
Bsp1286I GDGCHC 2 cut(s) 751, 951
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 4 cut(s) 357, 566, 652, 672
Bsp1720I GCTNAGC 1 cut(s) 945
Bsp19I CCATGG 2 cut(s) 381, 714
BspACI CCGC 3 cut(s) 35, 331, 1008
BspANI GGCC 3 cut(s) 380, 1080, 1125
BspCNI CTCAG 1 cut(s) 937
BspDI ATCGAT 1 cut(s) 655
BspHI TCATGA 2 cut(s) 523, 1238
BspLI GGNNCC 3 cut(s) 243, 270, 750
BspMAI CTGCAG 1 cut(s) 1144
BspPI GGATC 1 cut(s) 352
BspT104I TTCGAA 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 184
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 2 cut(s) 587, 1081
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 3 cut(s) 245, 381, 714
BssMI GATC 4 cut(s) 357, 566, 652, 672
BssT1I CCWWGG 2 cut(s) 381, 714
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 5 cut(s) 166, 640, 856, 1095, 1106
BstAPI GCANNNNNTGC 1 cut(s) 794
BstAUI TGTACA 1 cut(s) 483
BstBI TTCGAA 1 cut(s) 665
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 945
BstDSI CCRYGG 2 cut(s) 381, 714
BstF5I GGATG 2 cut(s) 725, 989
BstHHI GCGC 2 cut(s) 127, 813
BstKTI GATC 4 cut(s) 360, 569, 655, 675
BstMAI GTCTC 1 cut(s) 885
BstMBI GATC 4 cut(s) 357, 566, 652, 672
BstMWI GCNNNNNNNGC 2 cut(s) 794, 1016
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 245
BstSFI CTRYAG 2 cut(s) 321, 1140
BstV1I GCAGC 4 cut(s) 168, 553, 991, 1006
BstV2I GAAGAC 1 cut(s) 865
BstXI CCANNNNNNTGG 1 cut(s) 1117
Bsu15I ATCGAT 1 cut(s) 655
BsuRI GGCC 3 cut(s) 380, 1080, 1125
BsuTUI ATCGAT 1 cut(s) 655
BtgI CCRYGG 2 cut(s) 381, 714
BtrI CACGTC 1 cut(s) 913
BtsCI GGATG 2 cut(s) 725, 989
BtsI GCAGTG 2 cut(s) 465, 792
BtsIMutI CAGTG 4 cut(s) 465, 501, 792, 1074
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 808
CciI TCATGA 2 cut(s) 523, 1238
CfoI GCGC 2 cut(s) 127, 813
Cfr10I RCCGGY 1 cut(s) 184
ClaI ATCGAT 1 cut(s) 655
Csp6I GTAC 2 cut(s) 484, 982
CviAII CATG 8 cut(s) 382, 524, 532, 715, 814, 928, 994, 1239
CviQI GTAC 2 cut(s) 484, 982
DdeI CTNAG 1 cut(s) 945
DpnI GATC 4 cut(s) 359, 568, 654, 674
DpnII GATC 4 cut(s) 357, 566, 652, 672
EaeI YGGCCR 1 cut(s) 1078
EciI GGCGGA 2 cut(s) 24, 346
Ecl136II GAGCTC 1 cut(s) 949
Eco130I CCWWGG 2 cut(s) 381, 714
Eco24I GRGCYC 2 cut(s) 751, 951
Eco32I GATATC 1 cut(s) 999
Eco53kI GAGCTC 1 cut(s) 949
Eco57I CTGAAG 4 cut(s) 68, 525, 677, 1107
EcoICRI GAGCTC 1 cut(s) 949
EcoRI GAATTC 1 cut(s) 1135
EcoRII CCWGG 1 cut(s) 245
EcoRV GATATC 1 cut(s) 999
EcoT14I CCWWGG 2 cut(s) 381, 714
EcoT22I ATGCAT 1 cut(s) 790
EcoT38I GRGCYC 2 cut(s) 751, 951
ErhI CCWWGG 2 cut(s) 381, 714
FaeI CATG 8 cut(s) 385, 527, 535, 718, 817, 931, 997, 1242
FaqI GGGAC 1 cut(s) 1115
FatI CATG 8 cut(s) 381, 523, 531, 714, 813, 927, 993, 1238
Fnu4HI GCNGC 5 cut(s) 182, 542, 1005, 1008, 1020
FokI GGATG 2 cut(s) 712, 976
FriOI GRGCYC 2 cut(s) 751, 951
Fsp4HI GCNGC 5 cut(s) 182, 542, 1005, 1008, 1020
FspBI CTAG 4 cut(s) 111, 681, 698, 941
FspI TGCGCA 2 cut(s) 126, 812
GlaI GCGC 2 cut(s) 126, 812
GluI GCNGC 5 cut(s) 182, 542, 1005, 1008, 1020
GsuI CTGGAG 1 cut(s) 860
HaeIII GGCC 3 cut(s) 380, 1080, 1125
HapII CCGG 2 cut(s) 185, 1168
HhaI GCGC 2 cut(s) 127, 813
Hin1II CATG 8 cut(s) 385, 527, 535, 718, 817, 931, 997, 1242
Hin6I GCGC 2 cut(s) 125, 811
HinP1I GCGC 2 cut(s) 125, 811
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 7 cut(s) 15, 60, 346, 431, 536, 954, 1042
HpaII CCGG 2 cut(s) 185, 1168
HphI GGTGA 2 cut(s) 65, 295
Hpy166II GTNNAC 6 cut(s) 169, 397, 445, 643, 1151, 1165
Hpy188III TCNNGA 8 cut(s) 86, 191, 343, 524, 882, 1051, 1179, 1239
Hpy8I GTNNAC 6 cut(s) 169, 397, 445, 643, 1151, 1165
HpyAV CCTTC 6 cut(s) 229, 244, 320, 328, 637, 1136
HpyCH4III ACNGT 5 cut(s) 166, 640, 856, 1095, 1106
HpyCH4IV ACGT 2 cut(s) 912, 1024
HpyCH4V TGCA 4 cut(s) 788, 961, 1022, 1142
HpyF10VI GCNNNNNNNGC 2 cut(s) 794, 1016
HpyF3I CTNAG 1 cut(s) 945
HpySE526I ACGT 2 cut(s) 912, 1024
Hsp92II CATG 8 cut(s) 385, 527, 535, 718, 817, 931, 997, 1242
HspAI GCGC 2 cut(s) 125, 811
Kzo9I GATC 4 cut(s) 357, 566, 652, 672
LmnI GCTCC 1 cut(s) 754
Lsp1109I GCAGC 4 cut(s) 168, 553, 991, 1006
LweI GCATC 3 cut(s) 606, 734, 905
MaeI CTAG 4 cut(s) 111, 681, 698, 941
MaeII ACGT 2 cut(s) 912, 1024
MalI GATC 4 cut(s) 359, 568, 654, 674
MboI GATC 4 cut(s) 357, 566, 652, 672
MhlI GDGCHC 2 cut(s) 751, 951
MlsI TGGCCA 1 cut(s) 1080
MluCI AATT 6 cut(s) 255, 452, 605, 825, 1135, 1172
MluNI TGGCCA 1 cut(s) 1080
MlyI GAGTC 4 cut(s) 24, 54, 340, 530
MmeI TCCRAC 2 cut(s) 884, 992
MnlI CCTC 6 cut(s) 48, 268, 371, 584, 678, 1092
Mox20I TGGCCA 1 cut(s) 1080
Mph1103I ATGCAT 1 cut(s) 790
MscI TGGCCA 1 cut(s) 1080
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 1237
Msp20I TGGCCA 1 cut(s) 1080
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 2 cut(s) 185, 1168
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 2 cut(s) 794, 1016
NcoI CCATGG 2 cut(s) 381, 714
NdeII GATC 4 cut(s) 357, 566, 652, 672
NlaIII CATG 8 cut(s) 385, 527, 535, 718, 817, 931, 997, 1242
NlaIV GGNNCC 3 cut(s) 243, 270, 750
NmeAIII GCCGAG 1 cut(s) 542
NsbI TGCGCA 2 cut(s) 126, 812
NsiI ATGCAT 1 cut(s) 790
NspV TTCGAA 1 cut(s) 665
PagI TCATGA 2 cut(s) 523, 1238
PfeI GAWTC 3 cut(s) 431, 954, 1042
PflMI CCANNNNNTGG 2 cut(s) 238, 1190
PkrI GCNGC 5 cut(s) 183, 543, 1006, 1009, 1021
PleI GAGTC 4 cut(s) 23, 54, 340, 530
PpsI GAGTC 4 cut(s) 23, 54, 340, 530
PsiI TTATAA 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 951
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 243, 270, 750
PstI CTGCAG 1 cut(s) 1144
PstNI CAGNNNCTG 1 cut(s) 808
RsaI GTAC 2 cut(s) 485, 983
RsaNI GTAC 2 cut(s) 484, 982
RseI CAYNNNNRTG 1 cut(s) 1237
SacI GAGCTC 1 cut(s) 951
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 5 cut(s) 182, 542, 1005, 1008, 1020
Sau3AI GATC 4 cut(s) 357, 566, 652, 672
SchI GAGTC 4 cut(s) 24, 54, 340, 530
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 2 cut(s) 751, 951
SfaNI GCATC 3 cut(s) 606, 734, 905
SfcI CTRYAG 2 cut(s) 321, 1140
SfuI TTCGAA 1 cut(s) 665
SmiMI CAYNNNNRTG 1 cut(s) 1237
SmlI CTYRAG 1 cut(s) 1177
SmoI CTYRAG 1 cut(s) 1177
Sse9I AATT 6 cut(s) 255, 452, 605, 825, 1135, 1172
SsiI CCGC 3 cut(s) 35, 331, 1008
SspMI CTAG 4 cut(s) 111, 681, 698, 941
SstI GAGCTC 1 cut(s) 951
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 2 cut(s) 381, 714
TaaI ACNGT 5 cut(s) 166, 640, 856, 1095, 1106
TaiI ACGT 2 cut(s) 915, 1027
TaqI TCGA 7 cut(s) 100, 214, 356, 655, 665, 883, 1133
TasI AATT 6 cut(s) 255, 452, 605, 825, 1135, 1172
TatI WGTACW 2 cut(s) 483, 981
TauI GCSGC 1 cut(s) 1010
TfiI GAWTC 3 cut(s) 431, 954, 1042
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 4 cut(s) 465, 508, 799, 1081
TseI GCWGC 4 cut(s) 181, 541, 1004, 1019
TspDTI ATGAA 7 cut(s) 315, 465, 512, 587, 750, 935, 1227
TspRI CASTG 4 cut(s) 465, 508, 799, 1081
Van91I CCANNNNNTGG 2 cut(s) 238, 1190
XapI RAATTY 3 cut(s) 605, 1135, 1172
XspI CTAG 4 cut(s) 111, 681, 698, 941
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.