Rmu_sc0031428.1_g000001

cell division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031428.1
OG0001255
Physical Location & Seq
Forward (+)
1 .. 1181
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031428.1_g000001.1.cds

Sequence Viewer

Length: 735 bp
gatggcagccgagttggagattacttggacaaacagccagatcttaattcgaagatgaggtctatccttgtagactggctgatagatgttcacaggaaatttgaactaacgcccgaaacattctacctcactgtgaatataattgaccgattcctttcaaggaggatggtaactaggagggaacttcagctagttggcattagttccatggtgatagcatccaagtatgaggaagtttgggctccacaggttgaggattttgtgtgcttatcagactatacatataccggcagtcagattcgtgcaatggagaaagcaatcttggacaagttggggtggtatttgacagttcctacaccttatgtctttcttgctagatacatcaaagcatccatttcgcctgatgatgagatgaggcatatggttttctttctagctgaacttggagccttggattatcgaacaaccatacggtactccccatccatgatagctgctgcagccgtctatgctgcccgctgtaccctcaacaagaagagtttctggactgaaactttgaagcaccacactggctactctgaagaacagttgagggaatgtgccaaggtcttggttggctttcacttgaaggctgctgaaagtgatcttaaagctgtttatcggaaatactcaaaacctgaatatggtgctgttgctggtcttactcctgccagaagttttcagtcctcttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04114 ko04115 ko04218 ko04914 ko05166 map04068 map04110 map04114 map04115 map04218 map04914 map05166
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

244

Amino Acids

27.97

Weight (kDa)

8.62

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 72
AciI CCGC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 2 cut(s) 170, 600
AfaI GTAC 2 cut(s) 476, 523
AfiI CCNNNNNNNGG 1 cut(s) 683
AgsI TTSAA 4 cut(s) 104, 159, 559, 628
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 4 cut(s) 190, 437, 494, 653
AluI AGCT 4 cut(s) 190, 437, 494, 653
ApeKI GCWGC 6 cut(s) 6, 494, 497, 500, 512, 632
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 4 cut(s) 44, 76, 538, 570
Asp700I GAANNNNTTC 1 cut(s) 539
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 1 cut(s) 50
BanII GRGCYC 1 cut(s) 244
BbvI GCAGC 6 cut(s) 18, 481, 484, 499, 512, 619
BccI CCATC 2 cut(s) 160, 490
BceAI ACGGC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 378, 412
BfaI CTAG 4 cut(s) 174, 191, 375, 434
BfmI CTRYAG 1 cut(s) 498
BglII AGATCT 1 cut(s) 40
BisI GCNGC 6 cut(s) 7, 495, 498, 501, 513, 633
BlsI GCNGC 6 cut(s) 8, 496, 499, 502, 514, 634
BmiI GGNNCC 2 cut(s) 243, 448
BmsI GCATC 2 cut(s) 227, 398
Bpu14I TTCGAA 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 207, 450, 603
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 80, 574
Bse3DI GCAATG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 207, 450, 603
BseGI GGATG 4 cut(s) 171, 218, 389, 482
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMI GCAATG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 80, 574
BseXI GCAGC 6 cut(s) 18, 481, 484, 499, 512, 619
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 683
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 40, 643
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 1 cut(s) 517
BspHI TCATGA 1 cut(s) 731
BspLI GGNNCC 2 cut(s) 243, 448
BspMAI CTGCAG 1 cut(s) 502
BspT104I TTCGAA 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 2 cut(s) 80, 574
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 3 cut(s) 207, 450, 603
BssMI GATC 2 cut(s) 40, 643
BssT1I CCWWGG 3 cut(s) 207, 450, 603
Bst4CI ACNGT 4 cut(s) 133, 349, 474, 588
Bst6I CTCTTC 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 517
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 4 cut(s) 171, 218, 389, 482
BstKTI GATC 2 cut(s) 43, 646
BstMBI GATC 2 cut(s) 40, 643
BstMWI GCNNNNNNNGC 2 cut(s) 500, 509
BstSFI CTRYAG 1 cut(s) 498
BstV1I GCAGC 6 cut(s) 18, 481, 484, 499, 512, 619
BstX2I RGATCY 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 4 cut(s) 171, 218, 389, 482
BtsIMutI CAGTG 2 cut(s) 129, 567
Cac8I GCNNGC 1 cut(s) 517
CciI TCATGA 1 cut(s) 731
Cfr10I RCCGGY 1 cut(s) 287
Csp6I GTAC 2 cut(s) 475, 522
CviAII CATG 3 cut(s) 208, 487, 732
CviQI GTAC 2 cut(s) 475, 522
DpnI GATC 2 cut(s) 42, 645
DpnII GATC 2 cut(s) 40, 643
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Eco130I CCWWGG 3 cut(s) 207, 450, 603
Eco24I GRGCYC 1 cut(s) 244
Eco57I CTGAAG 2 cut(s) 170, 600
EcoT14I CCWWGG 3 cut(s) 207, 450, 603
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 3 cut(s) 207, 450, 603
FaeI CATG 3 cut(s) 211, 490, 735
FatI CATG 3 cut(s) 207, 486, 731
FauI CCCGC 1 cut(s) 524
FauNDI CATATG 1 cut(s) 420
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 6 cut(s) 7, 495, 498, 501, 513, 633
FokI GGATG 4 cut(s) 178, 205, 376, 469
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 6 cut(s) 7, 495, 498, 501, 513, 633
FspBI CTAG 4 cut(s) 174, 191, 375, 434
GluI GCNGC 6 cut(s) 7, 495, 498, 501, 513, 633
HapII CCGG 1 cut(s) 288
Hin1II CATG 3 cut(s) 211, 490, 735
HinfI GANTC 2 cut(s) 150, 298
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 73, 91
Hpy188I TCNGA 4 cut(s) 274, 297, 580, 663
Hpy188III TCNNGA 2 cut(s) 544, 732
Hpy8I GTNNAC 2 cut(s) 73, 91
HpyAV CCTTC 1 cut(s) 622
HpyCH4III ACNGT 4 cut(s) 133, 349, 474, 588
HpyCH4V TGCA 2 cut(s) 305, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 509
Hsp92II CATG 3 cut(s) 211, 490, 735
Kzo9I GATC 2 cut(s) 40, 643
LmnI GCTCC 2 cut(s) 247, 446
Lsp1109I GCAGC 6 cut(s) 18, 481, 484, 499, 512, 619
LweI GCATC 2 cut(s) 227, 398
MaeI CTAG 4 cut(s) 174, 191, 375, 434
MaeIII GTNAC 1 cut(s) 169
MalI GATC 2 cut(s) 42, 645
MboI GATC 2 cut(s) 40, 643
MboII GAAGA 4 cut(s) 64, 547, 593, 720
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 3 cut(s) 46, 98, 141
MnlI CCTC 9 cut(s) 51, 137, 156, 171, 223, 247, 408, 536, 585
MroXI GAANNNNTTC 1 cut(s) 539
MseI TTAA 2 cut(s) 45, 648
MspA1I CMGCKG 1 cut(s) 519
MspI CCGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 500, 509
NcoI CCATGG 1 cut(s) 207
NdeI CATATG 1 cut(s) 420
NdeII GATC 2 cut(s) 40, 643
NlaIII CATG 3 cut(s) 211, 490, 735
NlaIV GGNNCC 2 cut(s) 243, 448
NmeAIII GCCGAG 1 cut(s) 35
NspV TTCGAA 1 cut(s) 50
PagI TCATGA 1 cut(s) 731
PdmI GAANNNNTTC 1 cut(s) 539
PfeI GAWTC 2 cut(s) 150, 298
PkrI GCNGC 6 cut(s) 8, 496, 499, 502, 514, 634
PspN4I GGNNCC 2 cut(s) 243, 448
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 2 cut(s) 476, 523
RsaNI GTAC 2 cut(s) 475, 522
SaqAI TTAA 2 cut(s) 45, 648
SatI GCNGC 6 cut(s) 7, 495, 498, 501, 513, 633
Sau3AI GATC 2 cut(s) 40, 643
SduI GDGCHC 1 cut(s) 244
SfaNI GCATC 2 cut(s) 227, 398
SfcI CTRYAG 1 cut(s) 498
SfuI TTCGAA 1 cut(s) 50
Sse9I AATT 3 cut(s) 46, 98, 141
SsiI CCGC 1 cut(s) 517
SspMI CTAG 4 cut(s) 174, 191, 375, 434
StyI CCWWGG 3 cut(s) 207, 450, 603
TaaI ACNGT 4 cut(s) 133, 349, 474, 588
TaqI TCGA 2 cut(s) 50, 460
TaqII GACCGA 1 cut(s) 162
TasI AATT 3 cut(s) 46, 98, 141
TfiI GAWTC 2 cut(s) 150, 298
Tru1I TTAA 2 cut(s) 45, 648
Tru9I TTAA 2 cut(s) 45, 648
TscAI CASTG 2 cut(s) 136, 574
TseI GCWGC 6 cut(s) 6, 494, 497, 500, 512, 632
TspDTI ATGAA 1 cut(s) 720
TspRI CASTG 2 cut(s) 136, 574
XapI RAATTY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 4 cut(s) 174, 191, 375, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.