Prupe.6G021300_v2.0.a1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001255
Physical Location & Seq
Forward (+)
1726935 .. 1729946
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G021300.1

Sequence Viewer

Length: 1338 bp
ATGGAGGACGTTAGAGCAGTGGTTCTTCCACAACAACCCAGAGGGAATGACAAAGTAAAGAATGAAGCACAAAGAAGGAACCGGCGTGTTCTTGGAGACATTGGTAATAATCTTGAGGCTGCTCATCTTGTTGAAGGGAAGCCCCCTGTTCAGATTTCTCGCCCTATGACTAGAAGCTTTCATGCACAATTGTTAGCCAAGGCACAAGCTAAAGCAGAAAAGAACGGGAACCCAGTACTGCCGGTTCTTGAAGACAGGGCAGCTGCTCTTAATAGAAAACGTGGTCCTGCCAAGAAGGCCGCAGTTGCTCCCAAGAAGGCAATTGAAAAGCCAATATCTGAGACTCTGGTGGTTATAAGTTCTGATGAAGAAGAAGAAAAAGATAAACAAGTGAACCGATGCAAGCCCATAGAAGGGCCTTCAAGGAAGGAAGTCAAGACTCTAACTTCAATCCTCACAGCTCGAAGCAAGGCTATGGCTTGTGGAGTTGACATCAAGCCAAAGGAAAAGATTGTTGATTTTGATTCAGCTGATGTTAGTGATGAATTGGCAGTAGTGGAATACATTGATGACTTGTACCAATTCTACAAGCTCACTGAAGATGACAGCAGAGTTCATGATTACATGGAGTCACAGCCAGAAATAAACCCAAAGATGAGATCAATCCTCATAGACTGGTTGGTCGAAGTTCACAGGAAATTTGAACTGATGCCTGAAACCTTCTACCTGACTGTGAACATAATTGATCGATACTTGTCAATGAAGATCGTTTCTAGGAGGGAACTTCAGTTAGTTGGTATTAGTTCTATGGTTATAGCATCCAAATATGAGGAAATCTGGGCCCCACAGGTCAATGACTTTGTTTGCTTATCAGACTATGCATACACTGGTGATCAGATACTTCTGATGGAGAAAGCAATTCTGGGGAAGTTGGAATGGTACCTGACAGTTCCCACCCCATATGTCTTCCTGTCTAGATACATCAAAGCCTCTGTTTCACCTGGTGAAGAGGTGAAGAATATGGTTTTCTTTCTAGCCGAGCTCGGAATTATGCATTATCCAACTACTGTTCGGTACTCCCCATCTCTGATAGCTGCTGCAGCTGTCTATGCTGCACGTTGCACCCTCAACAAAGCTCCTTTGTGGACTGAAACCCTGAAGCACCACACTGGCTACTCTGAAGAACAGTTAAGGGATTGCGCCAAGCTCTTGGTTGGCTTTCATTTGAATGCCGCAGAGAGTAATCTTCAAGCAGTTTATCGGAAGTTCTCAAAGCCTGAACATGTTGCTGTTGCTCGGATCCCTCCTGCCAAAAGTTTTCTGTCCTCATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

446

Amino Acids

50.18

Weight (kDa)

8.54

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AasI GACNNNNNNGTC 1 cut(s) 680
Acc65I GGTACC 1 cut(s) 939
AccB1I GGYRCC 1 cut(s) 939
AciI CCGC 2 cut(s) 300, 1233
AclWI GGATC 2 cut(s) 1294, 1307
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 4 cut(s) 618, 770, 1178, 1200
AdeI CACNNNGTG 1 cut(s) 1004
AfaI GTAC 4 cut(s) 237, 578, 941, 1076
AfiI CCNNNNNNNGG 2 cut(s) 413, 414
AflIII ACRYGT 1 cut(s) 1282
AgsI TTSAA 8 cut(s) 134, 251, 326, 423, 450, 704, 1228, 1250
AjnI CCWGG 1 cut(s) 1000
Alw21I GWGCWC 1 cut(s) 1044
Alw26I GTCTC 2 cut(s) 90, 335
AlwI GGATC 2 cut(s) 1294, 1307
AoxI GGCC 3 cut(s) 297, 416, 840
ApaI GGGCCC 1 cut(s) 844
ApeKI GCWGC 7 cut(s) 119, 260, 263, 1094, 1097, 1100, 1112
ApoI RAATTY 1 cut(s) 698
Asp718I GGTACC 1 cut(s) 939
AspLEI GCGC 1 cut(s) 1202
AspS9I GGNCC 4 cut(s) 284, 416, 840, 841
AsuHPI GGTGA 4 cut(s) 902, 990, 1016, 1024
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 844
BamHI GGATCC 1 cut(s) 1299
BanI GGYRCC 1 cut(s) 939
BanII GRGCYC 2 cut(s) 844, 1044
BbsI GAAGAC 2 cut(s) 258, 958
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 7 cut(s) 106, 250, 272, 1081, 1084, 1099, 1112
BccI CCATC 2 cut(s) 901, 1090
BciT130I CCWGG 1 cut(s) 1002
BclI TGATCA 1 cut(s) 892
BcoDI GTCTC 2 cut(s) 90, 335
BfaI CTAG 4 cut(s) 171, 774, 975, 1034
BfmI CTRYAG 1 cut(s) 1098
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 9 cut(s) 120, 261, 264, 300, 1095, 1098, 1101, 1113, 1233
BlsI GCNGC 9 cut(s) 121, 262, 265, 301, 1096, 1099, 1102, 1114, 1234
BmcAI AGTACT 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 1002
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 4 cut(s) 284, 416, 840, 841
BmiI GGNNCC 6 cut(s) 80, 230, 842, 843, 941, 1301
BmrFI CCNGG 1 cut(s) 1002
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 3 cut(s) 389, 699, 827
BmuI ACTGGG 1 cut(s) 227
BpiI GAAGAC 2 cut(s) 258, 958
BpuEI CTTGAG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 748
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 414
Bse118I RCCGGY 2 cut(s) 81, 241
Bse1I ACTGG 4 cut(s) 233, 680, 892, 1174
BseBI CCWGG 1 cut(s) 1002
BseCI ATCGAT 1 cut(s) 748
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 818
BseLI CCNNNNNNNGG 2 cut(s) 413, 414
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 4 cut(s) 233, 680, 892, 1174
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 7 cut(s) 106, 250, 272, 1081, 1084, 1099, 1112
BsgI GTGCAG 1 cut(s) 1098
BshFI GGCC 3 cut(s) 299, 418, 842
BshNI GGYRCC 1 cut(s) 939
BshVI ATCGAT 1 cut(s) 748
BsiHKAI GWGCWC 1 cut(s) 1044
BsiSI CCGG 2 cut(s) 82, 242
BslI CCNNNNNNNGG 2 cut(s) 413, 414
BsmAI GTCTC 2 cut(s) 90, 335
BsmI GAATGC 1 cut(s) 1234
BsnI GGCC 3 cut(s) 299, 418, 842
Bsp120I GGGCCC 1 cut(s) 840
Bsp1286I GDGCHC 2 cut(s) 844, 1044
Bsp143I GATC 5 cut(s) 659, 745, 765, 892, 1299
BspACI CCGC 2 cut(s) 300, 1233
BspANI GGCC 3 cut(s) 299, 418, 842
BspCNI CTCAG 1 cut(s) 331
BspDI ATCGAT 1 cut(s) 748
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 6 cut(s) 80, 230, 842, 843, 941, 1301
BspMAI CTGCAG 1 cut(s) 1102
BspPI GGATC 2 cut(s) 1294, 1307
BspT107I GGYRCC 1 cut(s) 939
BsrFI RCCGGY 2 cut(s) 81, 241
BsrI ACTGG 4 cut(s) 233, 680, 892, 1174
BssAI RCCGGY 2 cut(s) 81, 241
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 5 cut(s) 659, 745, 765, 892, 1299
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 1002
Bst4CI ACNGT 4 cut(s) 733, 949, 1069, 1188
Bst6I CTCTTC 1 cut(s) 1002
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 818
BstHHI GCGC 1 cut(s) 1202
BstKTI GATC 5 cut(s) 662, 748, 768, 895, 1302
BstMAI GTCTC 2 cut(s) 90, 335
BstMBI GATC 5 cut(s) 659, 745, 765, 892, 1299
BstMWI GCNNNNNNNGC 4 cut(s) 296, 305, 1100, 1109
BstNI CCWGG 1 cut(s) 1002
BstNSI RCATGY 1 cut(s) 1286
BstSCI CCNGG 1 cut(s) 1000
BstSFI CTRYAG 1 cut(s) 1098
BstSLI GKGCMC 1 cut(s) 844
BstV1I GCAGC 7 cut(s) 106, 250, 272, 1081, 1084, 1099, 1112
BstV2I GAAGAC 2 cut(s) 258, 958
BstX2I RGATCY 1 cut(s) 1299
BstXI CCANNNNNNTGG 1 cut(s) 1210
BstYI RGATCY 1 cut(s) 1299
Bsu15I ATCGAT 1 cut(s) 748
BsuRI GGCC 3 cut(s) 299, 418, 842
BsuTUI ATCGAT 1 cut(s) 748
BtsCI GGATG 1 cut(s) 818
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 4 cut(s) 24, 594, 885, 1167
Cac8I GCNNGC 1 cut(s) 404
CciI TCATGA 1 cut(s) 616
CfoI GCGC 1 cut(s) 1202
Cfr10I RCCGGY 2 cut(s) 81, 241
Cfr13I GGNCC 4 cut(s) 284, 416, 840, 841
ClaI ATCGAT 1 cut(s) 748
CsiI ACCWGGT 1 cut(s) 1000
Csp6I GTAC 4 cut(s) 236, 577, 940, 1075
CviAII CATG 4 cut(s) 182, 617, 625, 1283
CviQI GTAC 4 cut(s) 236, 577, 940, 1075
DdeI CTNAG 1 cut(s) 339
DpnI GATC 5 cut(s) 661, 747, 767, 894, 1301
DpnII GATC 5 cut(s) 659, 745, 765, 892, 1299
DraIII CACNNNGTG 1 cut(s) 1004
DrdI GACNNNNNNGTC 1 cut(s) 680
DseDI GACNNNNNNGTC 1 cut(s) 680
Eam1104I CTCTTC 1 cut(s) 1002
EarI CTCTTC 1 cut(s) 1002
Ecl136II GAGCTC 1 cut(s) 1042
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 2 cut(s) 844, 1044
Eco47I GGWCC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 1042
Eco57I CTGAAG 4 cut(s) 618, 770, 1178, 1200
EcoICRI GAGCTC 1 cut(s) 1042
EcoO109I RGGNCCY 2 cut(s) 416, 841
EcoRII CCWGG 1 cut(s) 1000
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 2 cut(s) 883, 1056
EcoT38I GRGCYC 2 cut(s) 844, 1044
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 4 cut(s) 185, 620, 628, 1286
FatI CATG 4 cut(s) 181, 616, 624, 1282
FauNDI CATATG 1 cut(s) 961
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 9 cut(s) 120, 261, 264, 300, 1095, 1098, 1101, 1113, 1233
FokI GGATG 1 cut(s) 805
FriOI GRGCYC 2 cut(s) 844, 1044
Fsp4HI GCNGC 9 cut(s) 120, 261, 264, 300, 1095, 1098, 1101, 1113, 1233
FspBI CTAG 4 cut(s) 171, 774, 975, 1034
GlaI GCGC 1 cut(s) 1201
GluI GCNGC 9 cut(s) 120, 261, 264, 300, 1095, 1098, 1101, 1113, 1233
HaeIII GGCC 3 cut(s) 299, 418, 842
HapII CCGG 2 cut(s) 82, 242
HhaI GCGC 1 cut(s) 1202
Hin1II CATG 4 cut(s) 185, 620, 628, 1286
Hin6I GCGC 1 cut(s) 1200
HinP1I GCGC 1 cut(s) 1200
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 4 cut(s) 343, 439, 524, 629
HpaII CCGG 2 cut(s) 82, 242
HphI GGTGA 4 cut(s) 902, 990, 1016, 1024
Hpy166II GTNNAC 5 cut(s) 394, 490, 691, 736, 1146
Hpy188III TCNNGA 6 cut(s) 113, 248, 436, 617, 975, 1335
Hpy8I GTNNAC 5 cut(s) 394, 490, 691, 736, 1146
HpyAV CCTTC 8 cut(s) 69, 128, 289, 310, 407, 421, 429, 730
HpyCH4III ACNGT 4 cut(s) 733, 949, 1069, 1188
HpyCH4IV ACGT 3 cut(s) 9, 280, 1117
HpyCH4V TGCA 7 cut(s) 185, 402, 881, 1054, 1100, 1115, 1122
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 305, 1100, 1109
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 3 cut(s) 9, 280, 1117
Hsp92II CATG 4 cut(s) 185, 620, 628, 1286
HspAI GCGC 1 cut(s) 1200
KpnI GGTACC 1 cut(s) 943
Ksp22I TGATCA 1 cut(s) 892
Kzo9I GATC 5 cut(s) 659, 745, 765, 892, 1299
LmnI GCTCC 2 cut(s) 313, 1141
Lsp1109I GCAGC 7 cut(s) 106, 250, 272, 1081, 1084, 1099, 1112
LweI GCATC 3 cut(s) 389, 699, 827
MabI ACCWGGT 1 cut(s) 1000
MaeI CTAG 4 cut(s) 171, 774, 975, 1034
MaeII ACGT 3 cut(s) 9, 280, 1117
MaeIII GTNAC 1 cut(s) 630
MalI GATC 5 cut(s) 661, 747, 767, 894, 1301
MboI GATC 5 cut(s) 659, 745, 765, 892, 1299
MfeI CAATTG 2 cut(s) 188, 321
MflI RGATCY 1 cut(s) 1299
MhlI GDGCHC 2 cut(s) 844, 1044
MluCI AATT 8 cut(s) 188, 321, 545, 581, 698, 741, 918, 1047
MlyI GAGTC 3 cut(s) 337, 433, 638
MmeI TCCRAC 2 cut(s) 912, 1085
Mph1103I ATGCAT 2 cut(s) 883, 1056
MseI TTAA 2 cut(s) 270, 1190
MslI CAYNNNNRTG 1 cut(s) 1227
MspA1I CMGCKG 3 cut(s) 263, 530, 1103
MspI CCGG 2 cut(s) 82, 242
MspR9I CCNGG 1 cut(s) 1002
MunI CAATTG 2 cut(s) 188, 321
Mva1269I GAATGC 1 cut(s) 1234
MvaI CCWGG 1 cut(s) 1002
MwoI GCNNNNNNNGC 4 cut(s) 296, 305, 1100, 1109
NdeI CATATG 1 cut(s) 961
NdeII GATC 5 cut(s) 659, 745, 765, 892, 1299
NlaIII CATG 4 cut(s) 185, 620, 628, 1286
NlaIV GGNNCC 6 cut(s) 80, 230, 842, 843, 941, 1301
NmeAIII GCCGAG 1 cut(s) 1063
NmuCI GTSAC 1 cut(s) 630
NsiI ATGCAT 2 cut(s) 883, 1056
NspI RCATGY 1 cut(s) 1286
PagI TCATGA 1 cut(s) 616
PciI ACATGT 1 cut(s) 1282
PctI GAATGC 1 cut(s) 1234
PfeI GAWTC 1 cut(s) 524
PkrI GCNGC 9 cut(s) 121, 262, 265, 301, 1096, 1099, 1102, 1114, 1234
PleI GAGTC 3 cut(s) 337, 433, 637
PpsI GAGTC 3 cut(s) 337, 433, 637
PscI ACATGT 1 cut(s) 1282
PsiI TTATAA 1 cut(s) 356
Psp124BI GAGCTC 1 cut(s) 1044
Psp6I CCWGG 1 cut(s) 1000
PspGI CCWGG 1 cut(s) 1000
PspN4I GGNNCC 6 cut(s) 80, 230, 842, 843, 941, 1301
PspOMI GGGCCC 1 cut(s) 840
PspPI GGNCC 4 cut(s) 284, 416, 840, 841
PsrI GAACNNNNNNTAC 2 cut(s) 228, 260
PstI CTGCAG 1 cut(s) 1102
PsuI RGATCY 1 cut(s) 1299
PvuII CAGCTG 3 cut(s) 263, 530, 1103
RsaI GTAC 4 cut(s) 237, 578, 941, 1076
RsaNI GTAC 4 cut(s) 236, 577, 940, 1075
RseI CAYNNNNRTG 1 cut(s) 1227
SacI GAGCTC 1 cut(s) 1044
SaqAI TTAA 2 cut(s) 270, 1190
SatI GCNGC 9 cut(s) 120, 261, 264, 300, 1095, 1098, 1101, 1113, 1233
Sau3AI GATC 5 cut(s) 659, 745, 765, 892, 1299
Sau96I GGNCC 4 cut(s) 284, 416, 840, 841
ScaI AGTACT 1 cut(s) 237
SchI GAGTC 3 cut(s) 337, 433, 638
ScrFI CCNGG 1 cut(s) 1002
SduI GDGCHC 2 cut(s) 844, 1044
SexAI ACCWGGT 1 cut(s) 1000
SfaNI GCATC 3 cut(s) 389, 699, 827
SfcI CTRYAG 1 cut(s) 1098
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 1227
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 8 cut(s) 188, 321, 545, 581, 698, 741, 918, 1047
SsiI CCGC 2 cut(s) 300, 1233
SspMI CTAG 4 cut(s) 171, 774, 975, 1034
SstI GAGCTC 1 cut(s) 1044
StyD4I CCNGG 1 cut(s) 1000
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 4 cut(s) 733, 949, 1069, 1188
TaiI ACGT 3 cut(s) 12, 283, 1120
TaqI TCGA 3 cut(s) 463, 684, 748
TasI AATT 8 cut(s) 188, 321, 545, 581, 698, 741, 918, 1047
TatI WGTACW 1 cut(s) 235
TauI GCSGC 2 cut(s) 302, 1235
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 2 cut(s) 270, 1190
Tru9I TTAA 2 cut(s) 270, 1190
TscAI CASTG 4 cut(s) 24, 601, 892, 1174
TseFI GTSAC 1 cut(s) 630
TseI GCWGC 7 cut(s) 119, 260, 263, 1094, 1097, 1100, 1112
Tsp45I GTSAC 1 cut(s) 630
TspDTI ATGAA 7 cut(s) 78, 170, 381, 558, 605, 776, 1211
TspRI CASTG 4 cut(s) 24, 601, 892, 1174
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 698
XbaI TCTAGA 1 cut(s) 974
XceI RCATGY 1 cut(s) 1286
XspI CTAG 4 cut(s) 171, 774, 975, 1034
ZrmI AGTACT 1 cut(s) 237
Zsp2I ATGCAT 2 cut(s) 883, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.