RLG00000036721

cell division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001255
Physical Location & Seq
Forward (+)
83740540 .. 83743472
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036721

Sequence Viewer

Length: 1134 bp
ATGGACACCAGAGCAGTTCTTCCTCCACAACCCAGAGGAGATGGTAAAGTCCATGGAGAAGCACCAAGAATGAACCAGAGAGTAGCTCTTCGAGACAGGACCAATGTTGAGGCAGGTCAGGTCGAAATCAAAGGGAAGCCCCCTGTTCAGATCAATCGCCCCATGACAAGGAGATTTCATGCCGAACTGTTAGCAAACAATGCACAGAAGAACAATGTGAACCAAGTGCTCGGTGTTGTAGACAAGGCAGCTCAGAATAGAAAATGTGCCCCTACAAAGAATGTTACTGAGAAGGTAACTGATGAAGAGAAGGAGAAGCCTGTCAATAGAAGCAAGCCAGTACAAGGTCAAAGGAAGGAAGTCAAGGCTTTCACTTCAACTCTAACAGCTCGAAGCAAGGATGGCAGCCGAGTTGGAGATTACTTGGACAAACAGCCAGATCTTAATTCGAAGATGAGGTCTATCCTTGTAGACTGGCTGATAGATGTTCACAGGAAATTTGAACTAACGCCCGAAACATTCTACCTCACTGTGAATATAATTGACCGATTCCTTTCAAGGAGGATGGTAACTAGGAGGGAACTTCAGCTAGTTGGCATTAGTTCCATGGTGATAGCATCCAAGTATGAGGAAGTTTGGGCTCCACAGGTTGAGGATTTTGTGTGCTTATCAGACTATACATATACCGGCAGTCAGATTCGTGCAATGGAGAAAGCAATCTTGGAGAAGTTGGGGTGGTATTTGACAGTTCCTACACCTTATGTCTTTCTTGCTAGATACATCAAAGCATCCATTTCGCCTGATGATGAGATGAGGCATATGGTTTTCTTTCTAGCTGAACTTGGAGCCTTGGATTATCGAACAACCATACGGTACTCCCCATCCATGATAGCTGCTGCAGCCGTCTATGCTGCCCGCTGTACCCTCAACAAGAAGAGTTTCTGGACTAAAACTTTGAAGCACCACACTGGCTACTCTGAAGAACAGTTGAGGGAATGTGCCAAGGTCTTGGTTGGCTTTCACTTGAAGGCTGCTGAAAGTGATCTTAAAGCTGTTTATCGGAAATACTCAAAACCTGAATATGGTGCTGTTGCTGGTCTTACTCCTGCCAGAAGTTTTCAGTCCTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04114 ko04115 ko04218 ko04914 ko05166 map04068 map04110 map04114 map04115 map04218 map04914 map05166
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

378

Amino Acids

42.81

Weight (kDa)

9.64

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 135 - 249 1.1e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 251 - 369 1.5e-40 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 104
AccI GTMKAC 2 cut(s) 240, 471
AciI CCGC 1 cut(s) 916
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 2 cut(s) 569, 999
AfaI GTAC 3 cut(s) 342, 875, 922
AfiI CCNNNNNNNGG 3 cut(s) 168, 344, 1082
AgsI TTSAA 5 cut(s) 378, 503, 558, 958, 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AluBI AGCT 7 cut(s) 86, 251, 389, 589, 836, 893, 1052
AluI AGCT 7 cut(s) 86, 251, 389, 589, 836, 893, 1052
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 87
ApeKI GCWGC 7 cut(s) 248, 405, 893, 896, 899, 911, 1031
ApoI RAATTY 1 cut(s) 497
ArsI GACNNNNNNTTYG 4 cut(s) 443, 475, 937, 969
Asp700I GAANNNNTTC 1 cut(s) 938
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 622
AsuII TTCGAA 1 cut(s) 449
AvaII GGWCC 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 643
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 7 cut(s) 260, 417, 880, 883, 898, 911, 1018
BccI CCATC 4 cut(s) 35, 395, 559, 889
BceAI ACGGC 1 cut(s) 887
BcgI CGANNNNNNTGC 2 cut(s) 777, 811
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 4 cut(s) 573, 590, 774, 833
BfmI CTRYAG 1 cut(s) 897
BfuAI ACCTGC 1 cut(s) 104
BglII AGATCT 1 cut(s) 439
BisI GCNGC 7 cut(s) 249, 406, 894, 897, 900, 912, 1032
BlsI GCNGC 7 cut(s) 250, 407, 895, 898, 901, 913, 1033
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 2 cut(s) 642, 847
BmsI GCATC 2 cut(s) 626, 797
BplI GAGNNNNNCTC 2 cut(s) 70, 102
Bpu14I TTCGAA 1 cut(s) 449
BsaJI CCNNGG 4 cut(s) 52, 606, 849, 1002
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 344, 1082
Bse118I RCCGGY 1 cut(s) 686
Bse1I ACTGG 3 cut(s) 338, 479, 973
Bse3DI GCAATG 1 cut(s) 711
BseDI CCNNGG 4 cut(s) 52, 606, 849, 1002
BseGI GGATG 5 cut(s) 406, 570, 617, 788, 881
BseLI CCNNNNNNNGG 3 cut(s) 168, 344, 1082
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 2 cut(s) 266, 279
BseNI ACTGG 3 cut(s) 338, 479, 973
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 7 cut(s) 260, 417, 880, 883, 898, 911, 1018
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 687
BslI CCNNNNNNNGG 3 cut(s) 168, 344, 1082
BsmAI GTCTC 1 cut(s) 87
Bsp119I TTCGAA 1 cut(s) 449
Bsp1286I GDGCHC 3 cut(s) 231, 271, 643
Bsp143I GATC 3 cut(s) 150, 439, 1042
Bsp19I CCATGG 2 cut(s) 52, 606
BspACI CCGC 1 cut(s) 916
BspCNI CTCAG 2 cut(s) 265, 280
BspHI TCATGA 1 cut(s) 1130
BspLI GGNNCC 2 cut(s) 642, 847
BspMAI CTGCAG 1 cut(s) 901
BspMI ACCTGC 1 cut(s) 104
BspQI GCTCTTC 1 cut(s) 93
BspT104I TTCGAA 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 1 cut(s) 686
BsrI ACTGG 3 cut(s) 338, 479, 973
BssAI RCCGGY 1 cut(s) 686
BssECI CCNNGG 4 cut(s) 52, 606, 849, 1002
BssMI GATC 3 cut(s) 150, 439, 1042
BssT1I CCWWGG 4 cut(s) 52, 606, 849, 1002
Bst4CI ACNGT 5 cut(s) 189, 532, 748, 873, 987
Bst6I CTCTTC 3 cut(s) 93, 300, 929
BstAPI GCANNNNNTGC 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 335, 916
BstDEI CTNAG 2 cut(s) 252, 288
BstDSI CCRYGG 2 cut(s) 52, 606
BstF5I GGATG 5 cut(s) 406, 570, 617, 788, 881
BstKTI GATC 3 cut(s) 153, 442, 1045
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 3 cut(s) 150, 439, 1042
BstMWI GCNNNNNNNGC 4 cut(s) 200, 402, 899, 908
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 7 cut(s) 260, 417, 880, 883, 898, 911, 1018
BstX2I RGATCY 1 cut(s) 439
BstXI CCANNNNNNTGG 1 cut(s) 1009
BstYI RGATCY 1 cut(s) 439
BtgI CCRYGG 2 cut(s) 52, 606
BtsCI GGATG 5 cut(s) 406, 570, 617, 788, 881
BtsIMutI CAGTG 2 cut(s) 528, 966
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 335, 916
CciI TCATGA 1 cut(s) 1130
Cfr10I RCCGGY 1 cut(s) 686
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 3 cut(s) 341, 874, 921
CviAII CATG 6 cut(s) 53, 163, 179, 607, 886, 1131
CviQI GTAC 3 cut(s) 341, 874, 921
DdeI CTNAG 2 cut(s) 252, 288
DpnI GATC 3 cut(s) 152, 441, 1044
DpnII GATC 3 cut(s) 150, 439, 1042
Eam1104I CTCTTC 3 cut(s) 93, 300, 929
EarI CTCTTC 3 cut(s) 93, 300, 929
Eco130I CCWWGG 4 cut(s) 52, 606, 849, 1002
Eco24I GRGCYC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 569, 999
EcoT14I CCWWGG 4 cut(s) 52, 606, 849, 1002
EcoT38I GRGCYC 1 cut(s) 643
ErhI CCWWGG 4 cut(s) 52, 606, 849, 1002
FaeI CATG 6 cut(s) 56, 166, 182, 610, 889, 1134
FatI CATG 6 cut(s) 52, 162, 178, 606, 885, 1130
FauI CCCGC 1 cut(s) 923
FauNDI CATATG 1 cut(s) 819
FblI GTMKAC 2 cut(s) 240, 471
Fnu4HI GCNGC 7 cut(s) 249, 406, 894, 897, 900, 912, 1032
FokI GGATG 5 cut(s) 413, 577, 604, 775, 868
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 7 cut(s) 249, 406, 894, 897, 900, 912, 1032
FspBI CTAG 4 cut(s) 573, 590, 774, 833
GluI GCNGC 7 cut(s) 249, 406, 894, 897, 900, 912, 1032
HapII CCGG 1 cut(s) 687
Hin1II CATG 6 cut(s) 56, 166, 182, 610, 889, 1134
HinfI GANTC 2 cut(s) 549, 697
HpaII CCGG 1 cut(s) 687
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 4 cut(s) 220, 241, 472, 490
Hpy188I TCNGA 6 cut(s) 150, 255, 673, 696, 979, 1062
Hpy188III TCNNGA 3 cut(s) 92, 943, 1131
Hpy8I GTNNAC 4 cut(s) 220, 241, 472, 490
HpyAV CCTTC 4 cut(s) 286, 304, 349, 1021
HpyCH4III ACNGT 5 cut(s) 189, 532, 748, 873, 987
HpyCH4V TGCA 3 cut(s) 203, 704, 899
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 402, 899, 908
HpyF3I CTNAG 2 cut(s) 252, 288
Hsp92II CATG 6 cut(s) 56, 166, 182, 610, 889, 1134
Kzo9I GATC 3 cut(s) 150, 439, 1042
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 646, 845
Lsp1109I GCAGC 7 cut(s) 260, 417, 880, 883, 898, 911, 1018
LweI GCATC 2 cut(s) 626, 797
MaeI CTAG 4 cut(s) 573, 590, 774, 833
MaeIII GTNAC 3 cut(s) 283, 295, 568
MalI GATC 3 cut(s) 152, 441, 1044
MboI GATC 3 cut(s) 150, 439, 1042
MboII GAAGA 8 cut(s) 11, 80, 220, 317, 463, 946, 992, 1119
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 3 cut(s) 231, 271, 643
MluCI AATT 3 cut(s) 445, 497, 540
MmeI TCCRAC 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 938
MseI TTAA 2 cut(s) 444, 1047
MspA1I CMGCKG 1 cut(s) 918
MspI CCGG 1 cut(s) 687
MwoI GCNNNNNNNGC 4 cut(s) 200, 402, 899, 908
NcoI CCATGG 2 cut(s) 52, 606
NdeI CATATG 1 cut(s) 819
NdeII GATC 3 cut(s) 150, 439, 1042
NlaIII CATG 6 cut(s) 56, 166, 182, 610, 889, 1134
NlaIV GGNNCC 2 cut(s) 642, 847
NmeAIII GCCGAG 1 cut(s) 434
NspV TTCGAA 1 cut(s) 449
PagI TCATGA 1 cut(s) 1130
PciSI GCTCTTC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 2 cut(s) 549, 697
PkrI GCNGC 7 cut(s) 250, 407, 895, 898, 901, 913, 1033
PspN4I GGNNCC 2 cut(s) 642, 847
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 3 cut(s) 342, 875, 922
RsaNI GTAC 3 cut(s) 341, 874, 921
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 444, 1047
SatI GCNGC 7 cut(s) 249, 406, 894, 897, 900, 912, 1032
Sau3AI GATC 3 cut(s) 150, 439, 1042
Sau96I GGNCC 1 cut(s) 99
SduI GDGCHC 3 cut(s) 231, 271, 643
SfaNI GCATC 2 cut(s) 626, 797
SfcI CTRYAG 1 cut(s) 897
SfuI TTCGAA 1 cut(s) 449
SinI GGWCC 1 cut(s) 99
Sse9I AATT 3 cut(s) 445, 497, 540
SsiI CCGC 1 cut(s) 916
SspMI CTAG 4 cut(s) 573, 590, 774, 833
StyI CCWWGG 4 cut(s) 52, 606, 849, 1002
TaaI ACNGT 5 cut(s) 189, 532, 748, 873, 987
TaqI TCGA 5 cut(s) 91, 123, 391, 449, 859
TaqII GACCGA 1 cut(s) 561
TasI AATT 3 cut(s) 445, 497, 540
TatI WGTACW 1 cut(s) 340
TfiI GAWTC 2 cut(s) 549, 697
Tru1I TTAA 2 cut(s) 444, 1047
Tru9I TTAA 2 cut(s) 444, 1047
TscAI CASTG 2 cut(s) 535, 973
TseI GCWGC 7 cut(s) 248, 405, 893, 896, 899, 911, 1031
TspDTI ATGAA 4 cut(s) 86, 167, 318, 1119
TspRI CASTG 2 cut(s) 535, 973
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 1 cut(s) 497
XmiI GTMKAC 2 cut(s) 240, 471
XmnI GAANNNNTTC 1 cut(s) 938
XspI CTAG 4 cut(s) 573, 590, 774, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.