Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001255

Physical Location & Seq

Genomic Coordinates Reverse (-)

83741675 .. 83743794

Gene Structure 2120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG543900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGTGATTGAGTACTCAGATGCAAAGGTGTGGACGGATTGCCAGCTTGCTAGGGCCCTTGGCTTTCTTAGAATTCTTATACATGTGGGTATCACAGATTTGGAGGACAGGAAACAAATAGAGGTTTGTACTGTCAGATTGAGAAGAAAGGATGAGGTGGAGAGTGGAAAGCTCTCCCCATCCATGATAGCTGCTGCAGCCGTCTATGCTGCCCGTTGTACTCTCAACAAGATGCCTTTCTGGACTGACACTTTGAAGCACCATACTGGTTACTCTGAAGAACAGCTTAGGCTGGAGAAAGTGATCTTAAAGCTCTTCTCAAGAAATACACAAAACCAGAATATGGTGCTGTTGCTCGTCGCAGTCCAGCTAAAATTTACAATACAACACCCACCTGAATATGCTAGTGGTGGTTTTTCTGTAATAGAGATTGGGTATCAAGAAGACTGTCACGACCCTATGTTTTATACTGATCCAAAATGTAGAGAAAAACATGAAAGTGCCAAGTACCTTGTAGCACCACAAGATGCTCATTCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

180

Amino Acids

20.61

Weight (kDa)

6.65

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_C	PF02984	57 - 97	5.8e-14	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27185 AT5G01800
fragaria_vesca	FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43460 FvH4_3g43460 FvH4_3g43460
malus_domestica	MD03G1022700.v1.1 MD03G1022800.v1.1 MD11G1027000.v1.1
prunus_persica	Prupe.6G021200_v2.0.a1 Prupe.6G021300_v2.0.a1
pyrus_communis	pycom03g01920 pycom11g02060
rosa_chinensis	RchiOBHm_Chr5g0077531 RchiOBHm_Chr5g0077551 RchiOBHm_Chr5g0077871 RchiOBHm_Chr7g0239321
rosa_laevigata	RLG00000000763 RLG00000006532 RLG00000013630 RLG00000017586 RLG00000022210 RLG00000028417 RLG00000036703 RLG00000036721
rosa_multiflora	Rmu_sc0001018.1_g000034 Rmu_sc0003058.1_g000003 Rmu_sc0004277.1_g000046 Rmu_sc0008456.1_g000002 Rmu_sc0031428.1_g000001 Rmu_ssc0000186.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004310 Rroxscaffold_1G00004440 Rroxscaffold_1G00004450 Rroxscaffold_3G00221010
rosa_rugosa	Rorug05G0455500 Rorug05G0455600 Rorug05G0456800.1 Rorug07G0327300 Rorug07G0327400
rosa_samantha	Rh5AG510200 Rh5AG511200 Rh5BG531900 Rh5BG533900 Rh5DG543900 Rh5DG544000 Rh5DG545300 Rh7AG480700
rosa_wichuraiana	Rw5G047290 Rw5G047440 Rw7G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	343
AclWI	GGATC	1 cut(s)	467
AcsI	RAATTY	2 cut(s)	72, 374
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	4 cut(s)	14, 130, 220, 509
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	6 cut(s)	46, 172, 191, 286, 313, 370
AluI	AGCT	6 cut(s)	46, 172, 191, 286, 313, 370
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	1 cut(s)	54
ApaI	GGGCCC	1 cut(s)	58
ApeKI	GCWGC	4 cut(s)	191, 194, 197, 209
ApoI	RAATTY	2 cut(s)	72, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AspS9I	GGNCC	2 cut(s)	54, 55
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	4 cut(s)	178, 181, 196, 209
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	51, 405
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	4 cut(s)	192, 195, 198, 210
BlsI	GCNGC	4 cut(s)	193, 196, 199, 211
BmcAI	AGTACT	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	54, 55
BmiI	GGNNCC	1 cut(s)	56
BmsI	GCATC	3 cut(s)	10, 222, 517
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	157, 179
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	4 cut(s)	178, 181, 196, 209
BshFI	GGCC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	343
BsnI	GGCC	1 cut(s)	56
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	303, 472
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	56
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	303, 472
BssT1I	CCWWGG	1 cut(s)	58
Bst4CI	ACNGT	2 cut(s)	133, 449
Bst6I	CTCTTC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	44, 48
BstDEI	CTNAG	3 cut(s)	16, 68, 287
BstF5I	GGATG	2 cut(s)	157, 179
BstKTI	GATC	2 cut(s)	306, 475
BstMBI	GATC	2 cut(s)	303, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 206
BstNSI	RCATGY	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	4 cut(s)	178, 181, 196, 209
BstV2I	GAAGAC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	157, 179
Cac8I	GCNNGC	2 cut(s)	44, 48
Cfr13I	GGNCC	2 cut(s)	54, 55
Csp6I	GTAC	4 cut(s)	13, 129, 219, 508
CviAII	CATG	3 cut(s)	83, 184, 494
CviQI	GTAC	4 cut(s)	13, 129, 219, 508
DdeI	CTNAG	3 cut(s)	16, 68, 287
DpnI	GATC	2 cut(s)	305, 474
DpnII	GATC	2 cut(s)	303, 472
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	297
EcoO109I	RGGNCCY	2 cut(s)	54, 55
EcoRI	GAATTC	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	3 cut(s)	86, 187, 497
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	3 cut(s)	82, 183, 493
Fnu4HI	GCNGC	4 cut(s)	192, 195, 198, 210
FokI	GGATG	2 cut(s)	164, 166
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	4 cut(s)	192, 195, 198, 210
FspBI	CTAG	2 cut(s)	51, 405
GluI	GCNGC	4 cut(s)	192, 195, 198, 210
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	86, 187, 497
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	19, 137, 277
Hpy188III	TCNNGA	4 cut(s)	241, 321, 440, 452
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	362
HpyCH4III	ACNGT	2 cut(s)	133, 449
HpyCH4V	TGCA	2 cut(s)	23, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 206
HpyF3I	CTNAG	3 cut(s)	16, 68, 287
Hsp92II	CATG	3 cut(s)	86, 187, 497
Kzo9I	GATC	2 cut(s)	303, 472
LguI	GCTCTTC	1 cut(s)	320
LpnPI	CCDG	8 cut(s)	56, 94, 226, 252, 278, 350, 380, 408
Lsp1109I	GCAGC	4 cut(s)	178, 181, 196, 209
LweI	GCATC	3 cut(s)	10, 222, 517
MaeI	CTAG	2 cut(s)	51, 405
MaeIII	GTNAC	2 cut(s)	269, 449
MalI	GATC	2 cut(s)	305, 474
MboI	GATC	2 cut(s)	303, 472
MboII	GAAGA	4 cut(s)	156, 290, 307, 455
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	72, 374
MnlI	CCTC	3 cut(s)	97, 115, 148
MseI	TTAA	2 cut(s)	308, 541
MslI	CAYNNNNRTG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	197, 206
NdeII	GATC	2 cut(s)	303, 472
NlaIII	CATG	3 cut(s)	86, 187, 497
NlaIV	GGNNCC	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	86
PciI	ACATGT	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	4 cut(s)	193, 196, 199, 211
PscI	ACATGT	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	56
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	54, 55
PstI	CTGCAG	1 cut(s)	199
RsaI	GTAC	4 cut(s)	14, 130, 220, 509
RsaNI	GTAC	4 cut(s)	13, 129, 219, 508
RseI	CAYNNNNRTG	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	308, 541
SatI	GCNGC	4 cut(s)	192, 195, 198, 210
Sau3AI	GATC	2 cut(s)	303, 472
Sau96I	GGNCC	2 cut(s)	54, 55
ScaI	AGTACT	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	3 cut(s)	10, 222, 517
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	2 cut(s)	72, 374
SspMI	CTAG	2 cut(s)	51, 405
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	133, 449
TasI	AATT	2 cut(s)	72, 374
TatI	WGTACW	3 cut(s)	12, 128, 218
Tru1I	TTAA	2 cut(s)	308, 541
Tru9I	TTAA	2 cut(s)	308, 541
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	4 cut(s)	191, 194, 197, 209
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	343
XapI	RAATTY	2 cut(s)	72, 374
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	2 cut(s)	51, 405
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.