Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001255

Physical Location & Seq

Genomic Coordinates Reverse (-)

83578769 .. 83581242

Gene Structure 2474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGACACCCGAGCAGTTGTTCCTCCACAACCCAGAGGGAATGGTAAAGTCCATGGAGAAGCACCGAGAAGGAACCAGCGAGTAGCTCTTGAAGACAGGACCAACTTTGAGGCAGGTCAGGTCGAAATTGAAGGGAAGATTACTCGCCGCATTACAAGGAGTTTTCATGCCCAGCTGTTGGCAAATGCACAGAAGAACAATGGGAACCCAGTGCTAGTGCCAGGTGTTGTAGACAAGGCAGCTAAGAATAGAAATGATGCCCCTGCAAAGAAGGTTACCAAGAAAGCAGCCGATGAAGATGTGAATGTGGTTAGTTCTAATGAAGAAAAGGAGAAGCCGGTCAACAAGCCGGTACAAGGTTCTAGGAAGGAAGTCAAGACTCTCACTTCGATTCTAACAGCTCGAAGCAAGGCTATGGCTTGTCGAGACACTAACAAACTAAAAGAGCAGATTGTGGATTTTGACGTAGCTGATGTCAATGATGAACTAGCTGTTGTTGAATATGTCGATGAATTGTACAAGTTCTACAAACTTGAAGAGGATGACTGCCGAGTTAGAGATTACATGGATACACAGCCAGATATCAATTCAAAGATGAGGTCTATCCTCATAGACTGGTTGATAGATGTCCACAGGAAATTTGAACTGATGCCTGAAACATTCTACCTTACTGTGAATATAATTGACCGATTCCTTTCAAGGAGGATGGTAACTAGGAGGGAACTTCAGCTAGTTGGCATCAGTTCCATGGTGATAGCATCAAAGTATGAGGAAGTTTGGGCTCCACAGGTCAATGATTTTGTGTGCTTATCAGACTATGCATATACGGGCAATCAAATTCGTGTAATGGAGAAAGCAATCCTGCAGAAGTTGGAGTGGTATTTGACAGTTCCAACACCTTATGTCTTTCTTGCTAGATACATCAAAGCTTCCGTTTCACCTGATGATGAGATGAAGAATATGGTTTACTTTCTAGCCGAACTTGGAGTCTTGGATTATCAAACAACCATTCGGCACTCCCCATCCATGATAGCTGCTGCAGCTGTCTATGCTGCTCATTGTACTCTCCACAAGATGCCTTTCTGGACTGAAACTTTGAAGCACCATACTGGTTACTCTGAAGAACAGCTAAGGGAATGTGCCAAGGTTTTGGTTGGCTTTCACTCGAAGGCTGGGGAAAGTGATCTTAAAGCTCTTTTCAAGAAATACACAAAACCTGAATATGGTGCTGTTGCTCGTCGCACTCCAGCTAAAATTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

421

Amino Acids

47.91

Weight (kDa)

8.76

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	173 - 296	1.9e-47	Cyclin, N-terminal domain
Cyclin_C	PF02984	298 - 415	5.9e-37	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27185 AT5G01800
fragaria_vesca	FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43460 FvH4_3g43460 FvH4_3g43460
malus_domestica	MD03G1022700.v1.1 MD03G1022800.v1.1 MD11G1027000.v1.1
prunus_persica	Prupe.6G021200_v2.0.a1 Prupe.6G021300_v2.0.a1
pyrus_communis	pycom03g01920 pycom11g02060
rosa_chinensis	RchiOBHm_Chr5g0077531 RchiOBHm_Chr5g0077551 RchiOBHm_Chr5g0077871 RchiOBHm_Chr7g0239321
rosa_laevigata	RLG00000000763 RLG00000006532 RLG00000013630 RLG00000017586 RLG00000022210 RLG00000028417 RLG00000036703 RLG00000036721
rosa_multiflora	Rmu_sc0001018.1_g000034 Rmu_sc0003058.1_g000003 Rmu_sc0004277.1_g000046 Rmu_sc0008456.1_g000002 Rmu_sc0031428.1_g000001 Rmu_ssc0000186.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004310 Rroxscaffold_1G00004440 Rroxscaffold_1G00004450 Rroxscaffold_3G00221010
rosa_rugosa	Rorug05G0455500 Rorug05G0455600 Rorug05G0456800.1 Rorug07G0327300 Rorug07G0327400
rosa_samantha	Rh5AG510200 Rh5AG511200 Rh5BG531900 Rh5BG533900 Rh5DG543900 Rh5DG544000 Rh5DG545300 Rh7AG480700
rosa_wichuraiana	Rw5G047290 Rw5G047440 Rw7G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	148
AcsI	RAATTY	3 cut(s)	638, 837, 1254
AcuI	CTGAAG	2 cut(s)	710, 1140
AfaI	GTAC	3 cut(s)	354, 518, 1063
AfiI	CCNNNNNNNGG	3 cut(s)	178, 356, 1223
AgsI	TTSAA	9 cut(s)	92, 131, 500, 536, 591, 644, 699, 1099, 1201
AjnI	CCWGG	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	420
Ama87I	CYCGRG	1 cut(s)	9
ApeKI	GCWGC	6 cut(s)	239, 287, 1034, 1037, 1040, 1052
ApoI	RAATTY	3 cut(s)	638, 837, 1254
ArsI	GACNNNNNNTTYG	8 cut(s)	370, 402, 584, 616, 972, 1004, 1078, 1110
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	763, 930
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	6 cut(s)	251, 299, 1021, 1024, 1039, 1052
BccI	CCATC	2 cut(s)	700, 1030
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	7 cut(s)	215, 363, 488, 714, 731, 915, 974
BfmI	CTRYAG	2 cut(s)	863, 1038
BfuAI	ACCTGC	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	7 cut(s)	148, 240, 288, 1035, 1038, 1041, 1053
BlsI	GCNGC	7 cut(s)	149, 241, 289, 1036, 1039, 1042, 1054
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	74, 206, 783
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	5 cut(s)	247, 639, 747, 767, 1065
BmuI	ACTGGG	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	1230
Bpu10I	CCTNAGC	1 cut(s)	1130
BsaJI	CCNNGG	3 cut(s)	52, 747, 1143
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 356, 1223
Bse118I	RCCGGY	2 cut(s)	337, 349
Bse1I	ACTGG	3 cut(s)	209, 620, 1114
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	52, 747, 1143
BseGI	GGATG	3 cut(s)	547, 711, 1022
BseLI	CCNNNNNNNGG	3 cut(s)	178, 356, 1223
BseNI	ACTGG	3 cut(s)	209, 620, 1114
BseXI	GCAGC	6 cut(s)	251, 299, 1021, 1024, 1039, 1052
BseYI	CCCAGC	2 cut(s)	171, 1172
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	338, 350
BslI	CCNNNNNNNGG	3 cut(s)	178, 356, 1223
BsmAI	GTCTC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	784
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	1183
Bsp19I	CCATGG	2 cut(s)	52, 747
BspACI	CCGC	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	74, 206, 783
BspMAI	CTGCAG	2 cut(s)	867, 1042
BspMI	ACCTGC	1 cut(s)	104
BsrFI	RCCGGY	2 cut(s)	337, 349
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	209, 620, 1114
BssAI	RCCGGY	2 cut(s)	337, 349
BssECI	CCNNGG	3 cut(s)	52, 747, 1143
BssMI	GATC	1 cut(s)	1183
BssT1I	CCWWGG	3 cut(s)	52, 747, 1143
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	673, 889
Bst6I	CTCTTC	1 cut(s)	531
BstAUI	TGTACA	1 cut(s)	516
BstDEI	CTNAG	2 cut(s)	243, 1130
BstDSI	CCRYGG	2 cut(s)	52, 747
BstEII	GGTNACC	1 cut(s)	274
BstF5I	GGATG	3 cut(s)	547, 711, 1022
BstKTI	GATC	1 cut(s)	1186
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	1183
BstMWI	GCNNNNNNNGC	2 cut(s)	1040, 1049
BstNI	CCWGG	1 cut(s)	222
BstPI	GGTNACC	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	2 cut(s)	863, 1038
BstV1I	GCAGC	6 cut(s)	251, 299, 1021, 1024, 1039, 1052
BstV2I	GAAGAC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	1150
BsuI	GTATCC	1 cut(s)	562
BtgI	CCRYGG	2 cut(s)	52, 747
BtsCI	GGATG	3 cut(s)	547, 711, 1022
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	104
Cfr10I	RCCGGY	2 cut(s)	337, 349
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	353, 517, 1062
CviAII	CATG	5 cut(s)	53, 167, 565, 748, 1027
CviQI	GTAC	3 cut(s)	353, 517, 1062
DdeI	CTNAG	2 cut(s)	243, 1130
DpnI	GATC	1 cut(s)	1185
DpnII	GATC	1 cut(s)	1183
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	3 cut(s)	52, 747, 1143
Eco24I	GRGCYC	1 cut(s)	784
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	710, 1140
Eco88I	CYCGRG	1 cut(s)	9
Eco91I	GGTNACC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	583
EcoT14I	CCWWGG	3 cut(s)	52, 747, 1143
EcoT22I	ATGCAT	1 cut(s)	823
EcoT38I	GRGCYC	1 cut(s)	784
ErhI	CCWWGG	3 cut(s)	52, 747, 1143
FaeI	CATG	5 cut(s)	56, 170, 568, 751, 1030
FatI	CATG	5 cut(s)	52, 166, 564, 747, 1026
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	7 cut(s)	148, 240, 288, 1035, 1038, 1041, 1053
FokI	GGATG	3 cut(s)	554, 718, 1009
FriOI	GRGCYC	1 cut(s)	784
Fsp4HI	GCNGC	7 cut(s)	148, 240, 288, 1035, 1038, 1041, 1053
FspBI	CTAG	7 cut(s)	215, 363, 488, 714, 731, 915, 974
GluI	GCNGC	7 cut(s)	148, 240, 288, 1035, 1038, 1041, 1053
GsaI	CCCAGC	2 cut(s)	175, 1176
GsuI	CTGGAG	1 cut(s)	1230
HapII	CCGG	2 cut(s)	338, 350
Hin1II	CATG	5 cut(s)	56, 170, 568, 751, 1030
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	927
HinfI	GANTC	4 cut(s)	379, 391, 690, 987
HpaII	CCGG	2 cut(s)	338, 350
HphI	GGTGA	2 cut(s)	763, 930
Hpy166II	GTNNAC	4 cut(s)	232, 343, 631, 967
Hpy188I	TCNGA	2 cut(s)	814, 1120
Hpy188III	TCNNGA	5 cut(s)	89, 376, 425, 1084, 1201
Hpy8I	GTNNAC	4 cut(s)	232, 343, 631, 967
Hpy99I	CGWCG	1 cut(s)	1242
HpyAV	CCTTC	5 cut(s)	63, 125, 265, 361, 1162
HpyCH4III	ACNGT	2 cut(s)	673, 889
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	5 cut(s)	188, 266, 821, 865, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1040, 1049
HpyF3I	CTNAG	2 cut(s)	243, 1130
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	5 cut(s)	56, 170, 568, 751, 1030
Kzo9I	GATC	1 cut(s)	1183
LmnI	GCTCC	1 cut(s)	787
Lsp1109I	GCAGC	6 cut(s)	251, 299, 1021, 1024, 1039, 1052
LweI	GCATC	5 cut(s)	247, 639, 747, 767, 1065
MaeI	CTAG	7 cut(s)	215, 363, 488, 714, 731, 915, 974
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	3 cut(s)	274, 709, 1112
MalI	GATC	1 cut(s)	1185
MboI	GATC	1 cut(s)	1183
MboII	GAAGA	8 cut(s)	104, 148, 205, 308, 335, 548, 967, 1133
MhlI	GDGCHC	1 cut(s)	784
MluCI	AATT	7 cut(s)	126, 512, 586, 638, 681, 837, 1254
MlyI	GAGTC	2 cut(s)	373, 996
MmeI	TCCRAC	2 cut(s)	852, 917
MnlI	CCTC	9 cut(s)	29, 33, 103, 532, 591, 617, 696, 711, 763
Mph1103I	ATGCAT	1 cut(s)	823
MseI	TTAA	1 cut(s)	1188
MspA1I	CMGCKG	2 cut(s)	175, 1043
MspI	CCGG	2 cut(s)	338, 350
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	1040, 1049
NcoI	CCATGG	2 cut(s)	52, 747
NdeII	GATC	1 cut(s)	1183
NlaIII	CATG	5 cut(s)	56, 170, 568, 751, 1030
NlaIV	GGNNCC	3 cut(s)	74, 206, 783
NmeAIII	GCCGAG	1 cut(s)	575
NsiI	ATGCAT	1 cut(s)	823
PfeI	GAWTC	2 cut(s)	391, 690
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	7 cut(s)	149, 241, 289, 1036, 1039, 1042, 1054
PleI	GAGTC	2 cut(s)	373, 995
PpsI	GAGTC	2 cut(s)	373, 995
Psp6I	CCWGG	1 cut(s)	220
PspEI	GGTNACC	1 cut(s)	274
PspFI	CCCAGC	2 cut(s)	171, 1172
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	3 cut(s)	74, 206, 783
PspPI	GGNCC	1 cut(s)	99
PstI	CTGCAG	2 cut(s)	867, 1042
PvuII	CAGCTG	2 cut(s)	175, 1043
RsaI	GTAC	3 cut(s)	354, 518, 1063
RsaNI	GTAC	3 cut(s)	353, 517, 1062
SaqAI	TTAA	1 cut(s)	1188
SatI	GCNGC	7 cut(s)	148, 240, 288, 1035, 1038, 1041, 1053
Sau3AI	GATC	1 cut(s)	1183
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	2 cut(s)	373, 996
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	784
SfaNI	GCATC	5 cut(s)	247, 639, 747, 767, 1065
SfcI	CTRYAG	2 cut(s)	863, 1038
SinI	GGWCC	1 cut(s)	99
Sse9I	AATT	7 cut(s)	126, 512, 586, 638, 681, 837, 1254
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	7 cut(s)	215, 363, 488, 714, 731, 915, 974
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	3 cut(s)	52, 747, 1143
TaaI	ACNGT	2 cut(s)	673, 889
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	6 cut(s)	123, 389, 403, 424, 507, 1166
TaqII	GACCGA	1 cut(s)	702
TasI	AATT	7 cut(s)	126, 512, 586, 638, 681, 837, 1254
TatI	WGTACW	2 cut(s)	516, 1061
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	391, 690
Tru1I	TTAA	1 cut(s)	1188
Tru9I	TTAA	1 cut(s)	1188
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	6 cut(s)	239, 287, 1034, 1037, 1040, 1052
TspDTI	ATGAA	6 cut(s)	155, 309, 336, 498, 525, 968
TspGWI	ACGGA	1 cut(s)	922
TspRI	CASTG	1 cut(s)	216
Van91I	CCANNNNNTGG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	3 cut(s)	638, 837, 1254
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	7 cut(s)	215, 363, 488, 714, 731, 915, 974
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.