Rorug07G0327400

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001255
Physical Location & Seq
Forward (+)
35809048 .. 35811532
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0327400.1

Sequence Viewer

Length: 1383 bp
ATGGGTGGTGGTGGTGCCGTCACCTTGTCTCTGACGATGATCATCTTCTTGTCTTCCATTTCCGTATGTTATGGATACGACCCATCAGATCCTTATGGTAACGTAACAATCACTTGGGATTTTCTCTCCCAGAGCGGCCCAGATACGTATGGCATAAAAGTATCGATATACAACCTGCAACAATACAGGCATGTCGAGGTGCCAGGATGGAAACTAGAATGGACGTGGAACAAGTCGGAAGTGATTTGGGACATGCGTGGTGCCGAGGCAGTTGAGCAAGGAGATTGCTCAGCGTTTAAGGCTTCCGGTGCCGGACAGCTTCCTCATTGCTGCATGAAGCGGCCCGTCATCATTGACCTGCTTCCCGGAACTCCTTACAACATGCAGTACACCAATTGCTGCAAGGGAGGTGTTTTGTCATCCATGAACCAAGACCCTTCCAAGTATCTCTCCGCCTTTCAGATGAGCATTGGAAACTTTCTTGTTACCCGCCCAGGATCAGACAGTCCCTTTGATAAGCTTAACATTACAATGCCTACCAATTTCAATCTCGGAATTCCTGGTTACACCTGTGGAGACGCGTTTCTAGTCCCTCCAACAAGGTTTTCTGATGATAAAGGACGCCGCTGGAAACAAACCCTTGAGACATGGAACATCACCTGCACCTACTCTCAGTTCCAGGCTTCTCGCGCACCAAGGTGCTGCGTGTCCTTGTCTGCCTTCTACAACACCACCATTGTCAATTGTCCTCGTTGCAGTTGCGGATGCCAAGGACTAGGAGGAGCCAAATGTATCAAGTCTGGTGACGAGCCTCCTCCTACTGTGTTGCAACTTCCACAGGAGCCACAAGCAGCAGCAGCGCCTCCTTTGGTAACATGTTCGGAGCACATGTGCCCCATCAGAGTTCACTGGCATGTCAAGCAGAGTTATAAGGAGTATTGGAGGGTCAAGATCACAATCACCAATCTCAATTTTCTCAAAAACTATTCTGATTGGAACTTGGTCGTTCAGCACCCAAACTTAAAAAGCGTCAGGCAGCTTTTCAGCTTCAATTACCAGCCCCTCACAACCTATGGAAACATCAATGATACGGGCATGTTTTGGGGCATTAAATTCTATAACGATATGCTATTAACCTCGGGAAACCAAGGGAACGCACAAACAGAAATGTTGCTGCACAAGGATGAAGGAATTTTCACATTCAGAGAAGGATGGACTTTCCCAAGAAGAATTTCCTTCAATGGGGATGAATGTGTAATGCCCCCTCCAGATGACTATCCCACACTTCCCAGTGGAGCTTATACTATTGGAGCAAACCTCAACCCTTCCCTACTATTAGTCTCCTTCTTGTTCCTAGCAGTAGCAGCACCGGCTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

460

Amino Acids

51.28

Weight (kDa)

6.98

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 50 - 224 1.5e-57 COBRA-like protein
COB_C PF25079 233 - 427 1.9e-49 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
AarI CACCTGC 1 cut(s) 668
Acc36I ACCTGC 3 cut(s) 183, 366, 668
AccB1I GGYRCC 4 cut(s) 14, 199, 260, 308
AccBSI CCGCTC 1 cut(s) 135
AccII CGCG 2 cut(s) 581, 690
AciI CCGC 6 cut(s) 135, 340, 453, 490, 625, 762
AclWI GGATC 2 cut(s) 83, 505
AcsI RAATTY 4 cut(s) 555, 1112, 1191, 1230
AcyI GRCGYC 1 cut(s) 622
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 1242
AflIII ACRYGT 3 cut(s) 579, 875, 888
AgsI TTSAA 3 cut(s) 547, 1051, 1240
AjiI CACGTC 1 cut(s) 225
AjnI CCWGG 4 cut(s) 202, 493, 559, 678
AjuI GAANNNNNNNTTGG 4 cut(s) 589, 621, 1216, 1248
AleI CACNNNNGTG 1 cut(s) 697
AluBI AGCT 5 cut(s) 319, 520, 1039, 1047, 1298
AluI AGCT 5 cut(s) 319, 520, 1039, 1047, 1298
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 4 cut(s) 33, 570, 638, 1345
AlwI GGATC 2 cut(s) 83, 505
Ama87I CYCGRG 1 cut(s) 1138
AoxI GGCC 2 cut(s) 136, 341
ApeKI GCWGC 9 cut(s) 330, 399, 702, 851, 854, 857, 1036, 1174, 1364
ApoI RAATTY 4 cut(s) 555, 1112, 1191, 1230
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
Asp700I GAANNNNTTC 1 cut(s) 1231
AspLEI GCGC 2 cut(s) 692, 862
AspS9I GGNCC 2 cut(s) 137, 342
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 4 cut(s) 13, 649, 815, 952
AvaI CYCGRG 1 cut(s) 1138
BaeGI GKGCMC 1 cut(s) 896
BanI GGYRCC 4 cut(s) 14, 199, 260, 308
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 888
BbvI GCAGC 9 cut(s) 317, 386, 689, 863, 866, 869, 1048, 1161, 1376
BccI CCATC 4 cut(s) 91, 201, 905, 1206
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 4 cut(s) 204, 495, 561, 680
BciVI GTATCC 1 cut(s) 68
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 4 cut(s) 33, 570, 638, 1345
BfaI CTAG 4 cut(s) 215, 587, 776, 1355
BfoI RGCGCY 1 cut(s) 863
BfuAI ACCTGC 3 cut(s) 183, 366, 668
BfuI GTATCC 1 cut(s) 68
BlpI GCTNAGC 1 cut(s) 289
Bme1390I CCNGG 5 cut(s) 204, 366, 495, 561, 680
BmeT110I CYCGRG 1 cut(s) 1138
BmgBI CACGTC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 137, 342
BmiI GGNNCC 6 cut(s) 16, 201, 262, 310, 784, 843
BmrFI CCNGG 5 cut(s) 204, 366, 495, 561, 680
BmrI ACTGGG 1 cut(s) 1284
BmsI GCATC 1 cut(s) 755
BmuI ACTGGG 1 cut(s) 1284
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 1302, 1334
BpmI CTGGAG 1 cut(s) 1251
Bpu1102I GCTNAGC 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 366
Bsa29I ATCGAT 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 147
BsaBI GATNNNNATC 3 cut(s) 41, 956, 1275
BsaHI GRCGYC 1 cut(s) 622
BsaJI CCNNGG 6 cut(s) 264, 493, 695, 769, 1137, 1147
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 875, 905
Bsc4I CCNNNNNNNGG 1 cut(s) 1242
Bse118I RCCGGY 1 cut(s) 1369
Bse1I ACTGG 2 cut(s) 914, 1290
Bse3DI GCAATG 1 cut(s) 325
Bse8I GATNNNNATC 3 cut(s) 41, 956, 1275
BseBI CCWGG 4 cut(s) 204, 495, 561, 680
BseCI ATCGAT 1 cut(s) 164
BseDI CCNNGG 6 cut(s) 264, 493, 695, 769, 1137, 1147
BseGI GGATG 6 cut(s) 212, 419, 770, 1189, 1217, 1252
BseJI GATNNNNATC 3 cut(s) 41, 956, 1275
BseLI CCNNNNNNNGG 1 cut(s) 1242
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 2 cut(s) 303, 686
BseNI ACTGG 2 cut(s) 914, 1290
BseRI GAGGAG 2 cut(s) 795, 804
BseSI GKGCMC 1 cut(s) 896
BseXI GCAGC 9 cut(s) 317, 386, 689, 863, 866, 869, 1048, 1161, 1376
BsgI GTGCAG 2 cut(s) 646, 1160
Bsh1236I CGCG 2 cut(s) 581, 690
BshFI GGCC 2 cut(s) 138, 343
BshNI GGYRCC 4 cut(s) 14, 199, 260, 308
BshVI ATCGAT 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 888
BsiHKCI CYCGRG 1 cut(s) 1138
BsiSI CCGG 4 cut(s) 306, 312, 366, 1370
BslFI GGGAC 3 cut(s) 263, 492, 575
BslI CCNNNNNNNGG 1 cut(s) 1242
BsmAI GTCTC 4 cut(s) 33, 570, 638, 1345
BsmBI CGTCTC 1 cut(s) 570
BsmFI GGGAC 3 cut(s) 263, 492, 575
BsnI GGCC 2 cut(s) 138, 343
BsoBI CYCGRG 1 cut(s) 1138
Bsp1286I GDGCHC 2 cut(s) 888, 896
Bsp143I GATC 4 cut(s) 39, 88, 497, 951
Bsp1720I GCTNAGC 1 cut(s) 289
BspACI CCGC 6 cut(s) 135, 340, 453, 490, 625, 762
BspANI GGCC 2 cut(s) 138, 343
BspCNI CTCAG 2 cut(s) 302, 685
BspDI ATCGAT 1 cut(s) 164
BspFNI CGCG 2 cut(s) 581, 690
BspLI GGNNCC 6 cut(s) 16, 201, 262, 310, 784, 843
BspMI ACCTGC 3 cut(s) 183, 366, 668
BspPI GGATC 2 cut(s) 83, 505
BspT107I GGYRCC 4 cut(s) 14, 199, 260, 308
BsrBI CCGCTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 1369
BsrI ACTGG 2 cut(s) 914, 1290
BssAI RCCGGY 1 cut(s) 1369
BssECI CCNNGG 6 cut(s) 264, 493, 695, 769, 1137, 1147
BssMI GATC 4 cut(s) 39, 88, 497, 951
BssNI GRCGYC 1 cut(s) 622
BssT1I CCWWGG 3 cut(s) 695, 769, 1147
Bst2UI CCWGG 4 cut(s) 204, 495, 561, 680
Bst4CI ACNGT 2 cut(s) 506, 823
BstACI GRCGYC 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 289, 672
BstF5I GGATG 6 cut(s) 212, 419, 770, 1189, 1217, 1252
BstFNI CGCG 2 cut(s) 581, 690
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 2 cut(s) 692, 862
BstKTI GATC 4 cut(s) 42, 91, 500, 954
BstMAI GTCTC 4 cut(s) 33, 570, 638, 1345
BstMBI GATC 4 cut(s) 39, 88, 497, 951
BstMWI GCNNNNNNNGC 7 cut(s) 299, 308, 689, 857, 919, 1364, 1370
BstNI CCWGG 4 cut(s) 204, 495, 561, 680
BstNSI RCATGY 7 cut(s) 194, 256, 385, 879, 892, 917, 1099
BstSCI CCNGG 5 cut(s) 202, 364, 493, 559, 678
BstSLI GKGCMC 1 cut(s) 896
BstSNI TACGTA 1 cut(s) 147
BstUI CGCG 2 cut(s) 581, 690
BstV1I GCAGC 9 cut(s) 317, 386, 689, 863, 866, 869, 1048, 1161, 1376
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 164
BsuI GTATCC 1 cut(s) 68
BsuRI GGCC 2 cut(s) 138, 343
BsuTUI ATCGAT 1 cut(s) 164
BtrI CACGTC 1 cut(s) 225
BtsCI GGATG 6 cut(s) 212, 419, 770, 1189, 1217, 1252
BtsIMutI CAGTG 2 cut(s) 907, 1297
BveI ACCTGC 3 cut(s) 183, 366, 668
CfoI GCGC 2 cut(s) 692, 862
Cfr10I RCCGGY 1 cut(s) 1369
Cfr13I GGNCC 2 cut(s) 137, 342
ClaI ATCGAT 1 cut(s) 164
CseI GACGC 3 cut(s) 587, 630, 1018
Csp6I GTAC 1 cut(s) 388
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 2 cut(s) 289, 672
DpnI GATC 4 cut(s) 41, 90, 499, 953
DpnII GATC 4 cut(s) 39, 88, 497, 951
EciI GGCGGA 1 cut(s) 442
Eco105I TACGTA 1 cut(s) 147
Eco130I CCWWGG 3 cut(s) 695, 769, 1147
Eco88I CYCGRG 1 cut(s) 1138
EcoRI GAATTC 1 cut(s) 555
EcoRII CCWGG 4 cut(s) 202, 493, 559, 678
EcoT14I CCWWGG 3 cut(s) 695, 769, 1147
ErhI CCWWGG 3 cut(s) 695, 769, 1147
Esp3I CGTCTC 1 cut(s) 570
FaqI GGGAC 3 cut(s) 263, 492, 575
FauI CCCGC 1 cut(s) 497
FbaI TGATCA 1 cut(s) 39
FokI GGATG 6 cut(s) 219, 406, 777, 1196, 1224, 1259
FspBI CTAG 4 cut(s) 215, 587, 776, 1355
GlaI GCGC 2 cut(s) 691, 861
GsuI CTGGAG 1 cut(s) 1251
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 2 cut(s) 138, 343
HapII CCGG 4 cut(s) 306, 312, 366, 1370
HgaI GACGC 3 cut(s) 587, 630, 1018
HhaI GCGC 2 cut(s) 692, 862
Hin1I GRCGYC 1 cut(s) 622
Hin6I GCGC 2 cut(s) 690, 860
HinP1I GCGC 2 cut(s) 690, 860
HindIII AAGCTT 1 cut(s) 518
HpaII CCGG 4 cut(s) 306, 312, 366, 1370
HphI GGTGA 4 cut(s) 13, 649, 815, 952
Hpy166II GTNNAC 2 cut(s) 390, 907
Hpy188III TCNNGA 3 cut(s) 949, 1140, 1268
Hpy8I GTNNAC 2 cut(s) 390, 907
HpyAV CCTTC 7 cut(s) 447, 730, 1181, 1202, 1246, 1335, 1354
HpyCH4III ACNGT 2 cut(s) 506, 823
HpyCH4IV ACGT 3 cut(s) 102, 146, 224
HpyCH4V TGCA 8 cut(s) 178, 333, 385, 402, 663, 756, 829, 1177
HpyF10VI GCNNNNNNNGC 7 cut(s) 299, 308, 689, 857, 919, 1364, 1370
HpyF3I CTNAG 2 cut(s) 289, 672
HpySE526I ACGT 3 cut(s) 102, 146, 224
Hsp92I GRCGYC 1 cut(s) 622
HspAI GCGC 2 cut(s) 690, 860
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 4 cut(s) 39, 88, 497, 951
LmnI GCTCC 5 cut(s) 782, 841, 883, 1295, 1310
Lsp1109I GCAGC 9 cut(s) 317, 386, 689, 863, 866, 869, 1048, 1161, 1376
LweI GCATC 1 cut(s) 755
MaeI CTAG 4 cut(s) 215, 587, 776, 1355
MaeII ACGT 3 cut(s) 102, 146, 224
MaeIII GTNAC 7 cut(s) 19, 98, 103, 484, 563, 803, 871
MalI GATC 4 cut(s) 41, 90, 499, 953
MbiI CCGCTC 1 cut(s) 135
MboI GATC 4 cut(s) 39, 88, 497, 951
MboII GAAGA 3 cut(s) 37, 45, 1239
MfeI CAATTG 2 cut(s) 394, 742
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 2 cut(s) 888, 896
MluCI AATT 9 cut(s) 394, 541, 555, 742, 970, 1051, 1112, 1191, 1230
MluI ACGCGT 1 cut(s) 579
MmeI TCCRAC 2 cut(s) 216, 620
MroXI GAANNNNTTC 1 cut(s) 1231
MseI TTAA 5 cut(s) 297, 522, 1022, 1110, 1133
MslI CAYNNNNRTG 4 cut(s) 530, 697, 912, 1182
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 4 cut(s) 306, 312, 366, 1370
MspR9I CCNGG 5 cut(s) 204, 366, 495, 561, 680
MunI CAATTG 2 cut(s) 394, 742
MvaI CCWGG 4 cut(s) 204, 495, 561, 680
MvnI CGCG 2 cut(s) 581, 690
MwoI GCNNNNNNNGC 7 cut(s) 299, 308, 689, 857, 919, 1364, 1370
NciI CCSGG 1 cut(s) 366
NdeII GATC 4 cut(s) 39, 88, 497, 951
NlaIV GGNNCC 6 cut(s) 16, 201, 262, 310, 784, 843
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 19, 803
NspI RCATGY 7 cut(s) 194, 256, 385, 879, 892, 917, 1099
OliI CACNNNNGTG 1 cut(s) 697
PaqCI CACCTGC 1 cut(s) 668
PciI ACATGT 2 cut(s) 875, 888
PdmI GAANNNNTTC 1 cut(s) 1231
PfoI TCCNGGA 1 cut(s) 364
Ppu21I YACGTR 1 cut(s) 147
PscI ACATGT 2 cut(s) 875, 888
PsiI TTATAA 1 cut(s) 930
Psp6I CCWGG 4 cut(s) 202, 493, 559, 678
PspGI CCWGG 4 cut(s) 202, 493, 559, 678
PspN4I GGNNCC 6 cut(s) 16, 201, 262, 310, 784, 843
PspPI GGNCC 2 cut(s) 137, 342
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 4 cut(s) 530, 697, 912, 1182
SaqAI TTAA 5 cut(s) 297, 522, 1022, 1110, 1133
Sau3AI GATC 4 cut(s) 39, 88, 497, 951
Sau96I GGNCC 2 cut(s) 137, 342
ScrFI CCNGG 5 cut(s) 204, 366, 495, 561, 680
SduI GDGCHC 2 cut(s) 888, 896
SfaNI GCATC 1 cut(s) 755
SmiMI CAYNNNNRTG 4 cut(s) 530, 697, 912, 1182
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SnaBI TACGTA 1 cut(s) 147
Sse9I AATT 9 cut(s) 394, 541, 555, 742, 970, 1051, 1112, 1191, 1230
SsiI CCGC 6 cut(s) 135, 340, 453, 490, 625, 762
SspMI CTAG 4 cut(s) 215, 587, 776, 1355
StyD4I CCNGG 5 cut(s) 202, 364, 493, 559, 678
StyI CCWWGG 3 cut(s) 695, 769, 1147
TaaI ACNGT 2 cut(s) 506, 823
TaiI ACGT 3 cut(s) 105, 149, 227
TaqI TCGA 2 cut(s) 164, 195
TasI AATT 9 cut(s) 394, 541, 555, 742, 970, 1051, 1112, 1191, 1230
TatI WGTACW 1 cut(s) 387
TauI GCSGC 3 cut(s) 138, 343, 627
Tru1I TTAA 5 cut(s) 297, 522, 1022, 1110, 1133
Tru9I TTAA 5 cut(s) 297, 522, 1022, 1110, 1133
TscAI CASTG 2 cut(s) 914, 1297
TseFI GTSAC 2 cut(s) 19, 803
TseI GCWGC 9 cut(s) 330, 399, 702, 851, 854, 857, 1036, 1174, 1364
Tsp45I GTSAC 2 cut(s) 19, 803
TspDTI ATGAA 4 cut(s) 350, 440, 1200, 1263
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 2 cut(s) 914, 1297
XapI RAATTY 4 cut(s) 555, 1112, 1191, 1230
XceI RCATGY 7 cut(s) 194, 256, 385, 879, 892, 917, 1099
XmnI GAANNNNTTC 1 cut(s) 1231
XspI CTAG 4 cut(s) 215, 587, 776, 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.