Rh5AG510200

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001255
Physical Location & Seq
Reverse (-)
86177941 .. 86180652
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG510200.1

Sequence Viewer

Length: 1269 bp
ATGGACACCCAAGCAGTTGTTCCTCCACAACCCAGAGGGAATGGTAAAGTCCATGGAGAAGCACCGAGAAGGAACCAGCGAGTAGCTCTTGAAGACAGGACCAACTTTGAGGCAGGTCAGGTCGAAATCGAAGGGAAGATTACTCGCCGCATTACAAGGAGTTTTCATGCCCAGCTGTTGGCAAATGCACAGAAGAACAATGGGAACCCAGTACTAGTGCCAGGTGTTGTAGACAAGGCAGCTAAGAATAGAAATGATGCCCCTGCAAAGAAGGTTACCAAGAAAGCAGCTGATGAAGATGTGATTGTGGTTAGTTCTGATGAAGAAAAAGAGAAGCCGATCAATAGAGGCAAGCCGGTACAAGGTTCAAGGAAGGAAGTCAAGACTCTCACTTCGATTCTAACAGCTCGAAGCAAGGCTATGGCTTGTGGAGACACTAACAAACTAAAAGAGCAGATTGTGGATTTTGACGCAGCTGAAGTCAATGATGAACTAGCAGTTGTTGAATATGTCGATGAATTGTACAAGTTCTACAAACTTGAAGAGGATGACTGCCGAGTTGGAGATTACATGGATACACAGCCAGATATCAATTCAAAGATGAGGTCTATCCTCATAGACTGGTTGATAGATGTCCACAGGAAATTTGAACTGATGCCTGAAACATTCTACCTTACTGTGAATATAATTGACCGATTCCTTTCAAGGAGGATGGTAACTAGGAGGGAACTTCAGCTAGTTGGCATCAGTTCCATGGTGATAGCATCAAAGTATGAGGAAGTTTGGGCTCCACAGGTCAATGATTTTGTATGCTTATCAGACTATGCATATACGGGCAATCAAATTCGTGTAATGGAGAAAGCAATCCTGCAGAAGTTGGAGTGGTATTTGACAGTTCCAACACCTTATGTCTTTCTTGCTAGATACATCAAAGCTTCCATTTCACCTGATGATGAGATGAAGAATATGGTTTACTTTCTAGCCGAACTTGGAGTCTTGGATTATCAAACAACCATTCGGCACTCCCCATCCATGATAGCTGCTGCAGCTGTCTATGCTGGCCATTGTACTCTCAACAAGATGCCTTTCTGGACTGAAACTTTGAAGCACCATACTGGTTACTCTGAAGAACAGCTAAGGGAATGTGCCAAGGTTTTGGTTGGCTTTCACTCGAAGGCTGGAGAAAGTGATCTTAAAGCTCTTTTCAAGAAATACACAAAACCTGAATATGGTGCAGTTGCTCGTCACACTCCAGCTAAAATTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

422

Amino Acids

47.86

Weight (kDa)

8.04

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 175 - 298 5e-47 Cyclin, N-terminal domain
Cyclin_C PF02984 300 - 418 2.6e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 178
AccI GTMKAC 1 cut(s) 231
AciI CCGC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 1060
AcsI RAATTY 3 cut(s) 644, 843, 1260
AcuI CTGAAG 3 cut(s) 498, 716, 1146
AfaI GTAC 4 cut(s) 213, 360, 524, 1069
AfiI CCNNNNNNNGG 3 cut(s) 178, 362, 1229
AgsI TTSAA 9 cut(s) 92, 369, 506, 542, 597, 650, 705, 1105, 1207
AhlI ACTAGT 1 cut(s) 214
AjnI CCWGG 1 cut(s) 220
AjuI GAANNNNNNNTTGG 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 426
AoxI GGCC 1 cut(s) 1060
ApeKI GCWGC 6 cut(s) 239, 287, 473, 1040, 1043, 1046
ApoI RAATTY 3 cut(s) 644, 843, 1260
ArsI GACNNNNNNTTYG 8 cut(s) 376, 408, 590, 622, 978, 1010, 1084, 1116
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 769, 936
AvaII GGWCC 1 cut(s) 99
BalI TGGCCA 1 cut(s) 1062
BanII GRGCYC 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 6 cut(s) 251, 299, 485, 1027, 1030, 1058
BccI CCATC 2 cut(s) 706, 1036
BciT130I CCWGG 1 cut(s) 222
BciVI GTATCC 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 426
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 6 cut(s) 215, 494, 720, 737, 921, 980
BfmI CTRYAG 2 cut(s) 869, 1044
BfuAI ACCTGC 1 cut(s) 104
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 7 cut(s) 148, 240, 288, 474, 1041, 1044, 1047
BlsI GCNGC 7 cut(s) 149, 241, 289, 475, 1042, 1045, 1048
BmcAI AGTACT 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 3 cut(s) 74, 206, 789
BmrFI CCNGG 1 cut(s) 222
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 5 cut(s) 247, 645, 753, 773, 1071
BmuI ACTGGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 2 cut(s) 1200, 1236
Bpu10I CCTNAGC 1 cut(s) 1136
BsaJI CCNNGG 3 cut(s) 52, 753, 1149
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 362, 1229
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 3 cut(s) 209, 626, 1120
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 52, 753, 1149
BseGI GGATG 3 cut(s) 553, 717, 1028
BseLI CCNNNNNNNGG 3 cut(s) 178, 362, 1229
BseNI ACTGG 3 cut(s) 209, 626, 1120
BseXI GCAGC 6 cut(s) 251, 299, 485, 1027, 1030, 1058
BseYI CCCAGC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 1254
BshFI GGCC 1 cut(s) 1062
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 3 cut(s) 178, 362, 1229
BsmAI GTCTC 1 cut(s) 426
BsnI GGCC 1 cut(s) 1062
Bsp1286I GDGCHC 1 cut(s) 790
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 2 cut(s) 339, 1189
Bsp19I CCATGG 2 cut(s) 52, 753
BspACI CCGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 1062
BspLI GGNNCC 3 cut(s) 74, 206, 789
BspMAI CTGCAG 2 cut(s) 873, 1048
BspMI ACCTGC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 3 cut(s) 209, 626, 1120
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 52, 753, 1149
BssMI GATC 2 cut(s) 339, 1189
BssT1I CCWWGG 3 cut(s) 52, 753, 1149
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 679, 895
Bst6I CTCTTC 1 cut(s) 537
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 353, 1060
BstDEI CTNAG 2 cut(s) 243, 1136
BstDSI CCRYGG 2 cut(s) 52, 753
BstEII GGTNACC 1 cut(s) 274
BstF5I GGATG 3 cut(s) 553, 717, 1028
BstKTI GATC 2 cut(s) 342, 1192
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 2 cut(s) 339, 1189
BstMWI GCNNNNNNNGC 2 cut(s) 1046, 1055
BstNI CCWGG 1 cut(s) 222
BstPI GGTNACC 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 2 cut(s) 869, 1044
BstV1I GCAGC 6 cut(s) 251, 299, 485, 1027, 1030, 1058
BstV2I GAAGAC 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 1156
BsuI GTATCC 1 cut(s) 568
BsuRI GGCC 1 cut(s) 1062
BtgI CCRYGG 2 cut(s) 52, 753
BtsCI GGATG 3 cut(s) 553, 717, 1028
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 353, 1060
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 99
CseI GACGC 1 cut(s) 479
Csp6I GTAC 4 cut(s) 212, 359, 523, 1068
CviAII CATG 5 cut(s) 53, 167, 571, 754, 1033
CviQI GTAC 4 cut(s) 212, 359, 523, 1068
DdeI CTNAG 2 cut(s) 243, 1136
DpnI GATC 2 cut(s) 341, 1191
DpnII GATC 2 cut(s) 339, 1189
EaeI YGGCCR 1 cut(s) 1060
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Eco130I CCWWGG 3 cut(s) 52, 753, 1149
Eco24I GRGCYC 1 cut(s) 790
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 3 cut(s) 498, 716, 1146
Eco91I GGTNACC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 3 cut(s) 52, 753, 1149
EcoT22I ATGCAT 1 cut(s) 829
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 3 cut(s) 52, 753, 1149
FaeI CATG 5 cut(s) 56, 170, 574, 757, 1036
FatI CATG 5 cut(s) 52, 166, 570, 753, 1032
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 7 cut(s) 148, 240, 288, 474, 1041, 1044, 1047
FokI GGATG 3 cut(s) 560, 724, 1015
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 7 cut(s) 148, 240, 288, 474, 1041, 1044, 1047
FspBI CTAG 6 cut(s) 215, 494, 720, 737, 921, 980
GluI GCNGC 7 cut(s) 148, 240, 288, 474, 1041, 1044, 1047
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 2 cut(s) 1200, 1236
HaeIII GGCC 1 cut(s) 1062
HapII CCGG 1 cut(s) 356
HgaI GACGC 1 cut(s) 479
Hin1II CATG 5 cut(s) 56, 170, 574, 757, 1036
HindIII AAGCTT 1 cut(s) 933
HinfI GANTC 4 cut(s) 385, 397, 696, 993
HpaII CCGG 1 cut(s) 356
HphI GGTGA 2 cut(s) 769, 936
Hpy166II GTNNAC 3 cut(s) 232, 637, 973
Hpy188I TCNGA 3 cut(s) 319, 820, 1126
Hpy188III TCNNGA 4 cut(s) 89, 382, 1090, 1207
Hpy8I GTNNAC 3 cut(s) 232, 637, 973
HpyAV CCTTC 5 cut(s) 63, 125, 265, 367, 1168
HpyCH4III ACNGT 2 cut(s) 679, 895
HpyCH4V TGCA 6 cut(s) 188, 266, 827, 871, 1046, 1235
HpyF10VI GCNNNNNNNGC 2 cut(s) 1046, 1055
HpyF3I CTNAG 2 cut(s) 243, 1136
Hsp92II CATG 5 cut(s) 56, 170, 574, 757, 1036
Kzo9I GATC 2 cut(s) 339, 1189
LmnI GCTCC 1 cut(s) 793
Lsp1109I GCAGC 6 cut(s) 251, 299, 485, 1027, 1030, 1058
LweI GCATC 5 cut(s) 247, 645, 753, 773, 1071
MaeI CTAG 6 cut(s) 215, 494, 720, 737, 921, 980
MaeIII GTNAC 4 cut(s) 274, 715, 1118, 1244
MalI GATC 2 cut(s) 341, 1191
MboI GATC 2 cut(s) 339, 1189
MboII GAAGA 8 cut(s) 104, 148, 205, 308, 335, 554, 973, 1139
MhlI GDGCHC 1 cut(s) 790
MlsI TGGCCA 1 cut(s) 1062
MluCI AATT 6 cut(s) 518, 592, 644, 687, 843, 1260
MluNI TGGCCA 1 cut(s) 1062
MlyI GAGTC 2 cut(s) 379, 1002
MmeI TCCRAC 3 cut(s) 541, 858, 923
Mox20I TGGCCA 1 cut(s) 1062
Mph1103I ATGCAT 1 cut(s) 829
MscI TGGCCA 1 cut(s) 1062
MseI TTAA 1 cut(s) 1194
Msp20I TGGCCA 1 cut(s) 1062
MspA1I CMGCKG 4 cut(s) 175, 290, 476, 1049
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 1046, 1055
NcoI CCATGG 2 cut(s) 52, 753
NdeII GATC 2 cut(s) 339, 1189
NlaIII CATG 5 cut(s) 56, 170, 574, 757, 1036
NlaIV GGNNCC 3 cut(s) 74, 206, 789
NmeAIII GCCGAG 1 cut(s) 581
NmuCI GTSAC 1 cut(s) 1244
NsiI ATGCAT 1 cut(s) 829
PfeI GAWTC 2 cut(s) 397, 696
PflMI CCANNNNNTGG 1 cut(s) 178
PkrI GCNGC 7 cut(s) 149, 241, 289, 475, 1042, 1045, 1048
PleI GAGTC 2 cut(s) 379, 1001
PpsI GAGTC 2 cut(s) 379, 1001
Psp6I CCWGG 1 cut(s) 220
PspEI GGTNACC 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 74, 206, 789
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 2 cut(s) 873, 1048
PvuII CAGCTG 4 cut(s) 175, 290, 476, 1049
RsaI GTAC 4 cut(s) 213, 360, 524, 1069
RsaNI GTAC 4 cut(s) 212, 359, 523, 1068
SaqAI TTAA 1 cut(s) 1194
SatI GCNGC 7 cut(s) 148, 240, 288, 474, 1041, 1044, 1047
Sau3AI GATC 2 cut(s) 339, 1189
Sau96I GGNCC 1 cut(s) 99
ScaI AGTACT 1 cut(s) 213
SchI GAGTC 2 cut(s) 379, 1002
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 5 cut(s) 247, 645, 753, 773, 1071
SfcI CTRYAG 2 cut(s) 869, 1044
SinI GGWCC 1 cut(s) 99
SpeI ACTAGT 1 cut(s) 214
Sse9I AATT 6 cut(s) 518, 592, 644, 687, 843, 1260
SsiI CCGC 1 cut(s) 148
SspMI CTAG 6 cut(s) 215, 494, 720, 737, 921, 980
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 3 cut(s) 52, 753, 1149
TaaI ACNGT 2 cut(s) 679, 895
TaqI TCGA 6 cut(s) 123, 129, 395, 409, 513, 1172
TaqII GACCGA 1 cut(s) 708
TasI AATT 6 cut(s) 518, 592, 644, 687, 843, 1260
TatI WGTACW 3 cut(s) 211, 522, 1067
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 2 cut(s) 397, 696
Tru1I TTAA 1 cut(s) 1194
Tru9I TTAA 1 cut(s) 1194
TseFI GTSAC 1 cut(s) 1244
TseI GCWGC 6 cut(s) 239, 287, 473, 1040, 1043, 1046
Tsp45I GTSAC 1 cut(s) 1244
TspDTI ATGAA 6 cut(s) 155, 309, 336, 504, 531, 974
Van91I CCANNNNNTGG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 3 cut(s) 644, 843, 1260
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 6 cut(s) 215, 494, 720, 737, 921, 980
ZrmI AGTACT 1 cut(s) 213
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.