Rw7G040270

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001255
Physical Location & Seq
Reverse (-)
62399341 .. 62403679
4339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040270.1

Sequence Viewer

Length: 1350 bp
ATGATTCAGGACAAGCAGTCTAATGACCTAACTTTGATCGAGGAAGGTCTTGAAGGCAAACCCAGAAGGAACCAAAGAGTAGCTCTTCAAGATAGGACCAATGTCGAGGCAGCCCAGCTGTTAGCAAATGCACAGAAGAACAATGTGAACCCAGTGCTGGTGCCTAGTCTTCAAGACAAGGTAGCTGTTAATAGAAAATGTGCCCCTGCAAATAAGGGTACCAAGAAGAAACCCATAGATGAAGATGTGGTTGTTATAAGTTCTGATGAAGAAGAGGAGAAACCTGTGCTACTGCCTTGTCTTCAAGACAAGGTAGCTCTCAATAGAAAATATGCCCCTGAAAAGAAGGGTACCAAGAAGAAACCCATAGATGAAGATGTGGTTGTTGTAAGTTCTGATGAAGAAGAGGAGAAACCTGTCAGTAATAGAAGCAAGCCATCACAAGGTTCAAGGAAGGAAGTGAAGACTCTCACTTCGATTCTAACTGCTCGAAGCGAGGCTATGGCTGGTGGAGCCACCAACAAGCCAAAGGAACAAGTTGTGGACTTTGACTCCGCTGATGTTAATGATGAATTAGCAGTTGTTGAGTATATTGATGATATGTACAAGTTCTACAAACTTGAAGAGGATGGGAACCGAGTCGGAGATTACTTGGACTCACAGCCAGAAGTCAATTCAAAGATGAGATCAATCCTCATAGACTGGATTATAGAAGTTCACAGGAAATTTGAACTGATGCCAGAAACATTCTACCTTACTGTGAATATAATTGACAGATATCTTTCAGTGAGGATTGTTCCTAGGAGGGAACTTCAGCTACTTGGGATTAGTTCTATGGTGATAGCATCAAAATATGAGGAAGTTTGGGCTCCACAGGTCAATGACTTTGTCTGCATATCAGACGATGCATATATGGAAGATGAGATTCGAAAAATGGAGAAAGAAATCTTGGGGAAGCTGGAGTGGTATTTGACAGTTCCAACACCTTATGTGTTTCTTGCTAGATACATCAAAGCTTCTGTTTCACCTGATGATGAGATGAAGAATATGGTTTTCTTCCTAGCTGAGCTTGGAGTCATGCATTATCAAACAATCATCTCGTACTCTCCATCCATGATAGCTGCTGCAGCCGTCTATGCTGCCCGTTGTACCCTCAACAAAACCCCTTTCTGGACTGCAACTCTGAAGCACCACACTGGCTACTTGGAAGAACAGTTAAGGGAATGTGCTAAGGTCTTGGTTGGCTTTCACTCGAATGCTGCAGAAAGTAATCTTAAAGCTGTCTACCGGAAATACTCAAAACCTGAATTTGGAGCTGTAGCTCATCTCAATCTGGCAAAAAGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

449

Amino Acids

50.88

Weight (kDa)

5.57

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 200 - 325 1.2e-47 Cyclin, N-terminal domain
Cyclin_C PF02984 327 - 443 3.8e-39 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
Acc65I GGTACC 2 cut(s) 218, 350
AccB1I GGYRCC 3 cut(s) 160, 218, 350
AccI GTMKAC 1 cut(s) 1284
AciI CCGC 1 cut(s) 555
AcsI RAATTY 2 cut(s) 725, 1307
AcuI CTGAAG 2 cut(s) 797, 1205
AfaI GTAC 5 cut(s) 220, 352, 605, 1103, 1150
AfiI CCNNNNNNNGG 4 cut(s) 157, 443, 1170, 1310
AgsI TTSAA 8 cut(s) 53, 89, 173, 305, 450, 623, 678, 731
AhdI GACNNNNNGTC 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 932, 964
ApeKI GCWGC 6 cut(s) 110, 1121, 1124, 1127, 1139, 1259
ApoI RAATTY 2 cut(s) 725, 1307
ArsI GACNNNNNNTTYG 2 cut(s) 457, 489
Asp718I GGTACC 2 cut(s) 218, 350
AspA2I CCTAGG 1 cut(s) 800
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 850, 1017
AsuII TTCGAA 1 cut(s) 928
AvaII GGWCC 1 cut(s) 96
AvrII CCTAGG 1 cut(s) 800
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 3 cut(s) 160, 218, 350
BanII GRGCYC 1 cut(s) 871
BbsI GAAGAC 3 cut(s) 161, 293, 470
BbvI GCAGC 6 cut(s) 122, 1108, 1111, 1126, 1139, 1246
BccI CCATC 3 cut(s) 445, 623, 1117
BceAI ACGGC 1 cut(s) 1115
BfaI CTAG 4 cut(s) 165, 801, 1002, 1061
BfmI CTRYAG 3 cut(s) 1125, 1260, 1317
BisI GCNGC 6 cut(s) 111, 1122, 1125, 1128, 1140, 1260
BlnI CCTAGG 1 cut(s) 800
BlpI GCTNAGC 1 cut(s) 1065
BlsI GCNGC 6 cut(s) 112, 1123, 1126, 1129, 1141, 1261
Bme18I GGWCC 1 cut(s) 96
BmeRI GACNNNNNGTC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 7 cut(s) 71, 162, 220, 352, 514, 635, 870
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 3 cut(s) 726, 854, 895
BmuI ACTGGG 1 cut(s) 146
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 3 cut(s) 161, 293, 470
BpmI CTGGAG 1 cut(s) 980
Bpu10I CCTNAGC 1 cut(s) 1230
Bpu1102I GCTNAGC 1 cut(s) 1065
Bpu14I TTCGAA 1 cut(s) 928
BsaJI CCNNGG 1 cut(s) 800
BsaWI WCCGGW 1 cut(s) 1287
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 443, 1170, 1310
Bse1I ACTGG 3 cut(s) 152, 707, 1201
BseDI CCNNGG 1 cut(s) 800
BseGI GGATG 2 cut(s) 634, 1109
BseLI CCNNNNNNNGG 4 cut(s) 157, 443, 1170, 1310
BseMII CTCAG 1 cut(s) 1056
BseNI ACTGG 3 cut(s) 152, 707, 1201
BseRI GAGGAG 2 cut(s) 290, 422
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 6 cut(s) 122, 1108, 1111, 1126, 1139, 1246
BseYI CCCAGC 1 cut(s) 114
BshNI GGYRCC 3 cut(s) 160, 218, 350
BsiSI CCGG 1 cut(s) 1288
BslI CCNNNNNNNGG 4 cut(s) 157, 443, 1170, 1310
BsmI GAATGC 1 cut(s) 1261
Bsp119I TTCGAA 1 cut(s) 928
Bsp1286I GDGCHC 2 cut(s) 205, 871
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 2 cut(s) 36, 686
Bsp1720I GCTNAGC 1 cut(s) 1065
BspACI CCGC 1 cut(s) 555
BspCNI CTCAG 1 cut(s) 1057
BspLI GGNNCC 7 cut(s) 71, 162, 220, 352, 514, 635, 870
BspMAI CTGCAG 2 cut(s) 1129, 1264
BspQI GCTCTTC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 928
BspT107I GGYRCC 3 cut(s) 160, 218, 350
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 3 cut(s) 152, 707, 1201
BssECI CCNNGG 1 cut(s) 800
BssMI GATC 2 cut(s) 36, 686
BssT1I CCWWGG 1 cut(s) 800
Bst4CI ACNGT 3 cut(s) 760, 976, 1215
Bst6I CTCTTC 4 cut(s) 90, 267, 399, 618
BstAUI TGTACA 1 cut(s) 603
BstBI TTCGAA 1 cut(s) 928
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 2 cut(s) 1065, 1230
BstF5I GGATG 2 cut(s) 634, 1109
BstKTI GATC 2 cut(s) 39, 689
BstMBI GATC 2 cut(s) 36, 686
BstMWI GCNNNNNNNGC 3 cut(s) 512, 1127, 1136
BstPAI GACNNNNGTC 1 cut(s) 101
BstSFI CTRYAG 3 cut(s) 1125, 1260, 1317
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 6 cut(s) 122, 1108, 1111, 1126, 1139, 1246
BstV2I GAAGAC 3 cut(s) 161, 293, 470
BtsCI GGATG 2 cut(s) 634, 1109
BtsIMutI CAGTG 3 cut(s) 159, 792, 1194
Cac8I GCNNGC 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 5 cut(s) 219, 351, 604, 1102, 1149
CviAII CATG 2 cut(s) 1078, 1114
CviQI GTAC 5 cut(s) 219, 351, 604, 1102, 1149
DdeI CTNAG 2 cut(s) 1065, 1230
DpnI GATC 2 cut(s) 38, 688
DpnII GATC 2 cut(s) 36, 686
DriI GACNNNNNGTC 1 cut(s) 16
Eam1104I CTCTTC 4 cut(s) 90, 267, 399, 618
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 4 cut(s) 90, 267, 399, 618
Eco130I CCWWGG 1 cut(s) 800
Eco24I GRGCYC 1 cut(s) 871
Eco32I GATATC 1 cut(s) 779
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 797, 1205
EcoRV GATATC 1 cut(s) 779
EcoT14I CCWWGG 1 cut(s) 800
EcoT22I ATGCAT 2 cut(s) 910, 1083
EcoT38I GRGCYC 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 800
FaeI CATG 2 cut(s) 1081, 1117
FatI CATG 2 cut(s) 1077, 1113
FblI GTMKAC 1 cut(s) 1284
Fnu4HI GCNGC 6 cut(s) 111, 1122, 1125, 1128, 1140, 1260
FokI GGATG 2 cut(s) 641, 1096
FriOI GRGCYC 1 cut(s) 871
Fsp4HI GCNGC 6 cut(s) 111, 1122, 1125, 1128, 1140, 1260
FspBI CTAG 4 cut(s) 165, 801, 1002, 1061
GluI GCNGC 6 cut(s) 111, 1122, 1125, 1128, 1140, 1260
GsaI CCCAGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 980
HapII CCGG 1 cut(s) 1288
Hin1II CATG 2 cut(s) 1081, 1117
HindIII AAGCTT 2 cut(s) 1014, 1342
HinfI GANTC 8 cut(s) 4, 466, 478, 551, 639, 656, 925, 1074
HpaII CCGG 1 cut(s) 1288
HphI GGTGA 2 cut(s) 850, 1017
Hpy166II GTNNAC 4 cut(s) 148, 544, 718, 1285
Hpy188I TCNGA 5 cut(s) 265, 397, 644, 901, 1185
Hpy188III TCNNGA 6 cut(s) 8, 50, 89, 173, 305, 1171
Hpy8I GTNNAC 4 cut(s) 148, 544, 718, 1285
HpyAV CCTTC 5 cut(s) 38, 47, 60, 340, 448
HpyCH4III ACNGT 3 cut(s) 760, 976, 1215
HpyCH4V TGCA 8 cut(s) 131, 209, 894, 908, 1081, 1127, 1178, 1262
HpyF10VI GCNNNNNNNGC 3 cut(s) 512, 1127, 1136
HpyF3I CTNAG 2 cut(s) 1065, 1230
Hsp92II CATG 2 cut(s) 1081, 1117
KpnI GGTACC 2 cut(s) 222, 354
Kzo9I GATC 2 cut(s) 36, 686
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 3 cut(s) 512, 874, 1313
Lsp1109I GCAGC 6 cut(s) 122, 1108, 1111, 1126, 1139, 1246
LweI GCATC 3 cut(s) 726, 854, 895
MaeI CTAG 4 cut(s) 165, 801, 1002, 1061
MalI GATC 2 cut(s) 38, 688
MboI GATC 2 cut(s) 36, 686
MhlI GDGCHC 2 cut(s) 205, 871
MluCI AATT 5 cut(s) 572, 673, 725, 768, 1307
MlyI GAGTC 5 cut(s) 460, 545, 648, 650, 1083
MmeI TCCRAC 2 cut(s) 622, 1004
Mph1103I ATGCAT 2 cut(s) 910, 1083
MseI TTAA 5 cut(s) 189, 564, 1217, 1275, 1348
MslI CAYNNNNRTG 1 cut(s) 1254
MspA1I CMGCKG 2 cut(s) 118, 557
MspI CCGG 1 cut(s) 1288
Mva1269I GAATGC 1 cut(s) 1261
MwoI GCNNNNNNNGC 3 cut(s) 512, 1127, 1136
NdeII GATC 2 cut(s) 36, 686
NlaIII CATG 2 cut(s) 1081, 1117
NlaIV GGNNCC 7 cut(s) 71, 162, 220, 352, 514, 635, 870
NsiI ATGCAT 2 cut(s) 910, 1083
NspV TTCGAA 1 cut(s) 928
PciSI GCTCTTC 1 cut(s) 90
PctI GAATGC 1 cut(s) 1261
PfeI GAWTC 3 cut(s) 4, 478, 925
PflFI GACNNNGTC 1 cut(s) 887
PkrI GCNGC 6 cut(s) 112, 1123, 1126, 1129, 1141, 1261
PleI GAGTC 5 cut(s) 460, 545, 647, 650, 1082
PpsI GAGTC 5 cut(s) 460, 545, 647, 650, 1082
PshAI GACNNNNGTC 1 cut(s) 101
PsiI TTATAA 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 7 cut(s) 71, 162, 220, 352, 514, 635, 870
PspPI GGNCC 1 cut(s) 96
PsrI GAACNNNNNNTAC 2 cut(s) 801, 833
PstI CTGCAG 2 cut(s) 1129, 1264
PsyI GACNNNGTC 1 cut(s) 887
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 5 cut(s) 220, 352, 605, 1103, 1150
RsaNI GTAC 5 cut(s) 219, 351, 604, 1102, 1149
RseI CAYNNNNRTG 1 cut(s) 1254
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 5 cut(s) 189, 564, 1217, 1275, 1348
SatI GCNGC 6 cut(s) 111, 1122, 1125, 1128, 1140, 1260
Sau3AI GATC 2 cut(s) 36, 686
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 5 cut(s) 460, 545, 648, 650, 1083
SduI GDGCHC 2 cut(s) 205, 871
SfaNI GCATC 3 cut(s) 726, 854, 895
SfcI CTRYAG 3 cut(s) 1125, 1260, 1317
SfuI TTCGAA 1 cut(s) 928
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 1254
Sse9I AATT 5 cut(s) 572, 673, 725, 768, 1307
SsiI CCGC 1 cut(s) 555
SspMI CTAG 4 cut(s) 165, 801, 1002, 1061
StyI CCWWGG 1 cut(s) 800
TaaI ACNGT 3 cut(s) 760, 976, 1215
TaqI TCGA 6 cut(s) 39, 105, 476, 490, 928, 1253
TasI AATT 5 cut(s) 572, 673, 725, 768, 1307
TatI WGTACW 1 cut(s) 603
TfiI GAWTC 3 cut(s) 4, 478, 925
Tru1I TTAA 5 cut(s) 189, 564, 1217, 1275, 1348
Tru9I TTAA 5 cut(s) 189, 564, 1217, 1275, 1348
TscAI CASTG 3 cut(s) 159, 792, 1201
TseI GCWGC 6 cut(s) 110, 1121, 1124, 1127, 1139, 1259
TspDTI ATGAA 6 cut(s) 255, 282, 387, 414, 585, 1055
TspRI CASTG 3 cut(s) 159, 792, 1201
Tth111I GACNNNGTC 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 2 cut(s) 725, 1307
XmaJI CCTAGG 1 cut(s) 800
XmiI GTMKAC 1 cut(s) 1284
XspI CTAG 4 cut(s) 165, 801, 1002, 1061
Zsp2I ATGCAT 2 cut(s) 910, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.