Rroxscaffold_1G00004450

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
6175206 .. 6175601
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004450.1

Sequence Viewer

Length: 237 bp
ATGATAACTGCTGCAGCCGTCTATGTTGCCCATTGTACTCTCAACAAGATGCCTTTCTGGACTGACACTTTGAAGCACCATACTGGTTACTCTGAAGAAAAGCTAAGGGAATGTGCCAAGGTTTTAGTTGGCTTTCACTTGAAGGCTGGAGAAAGTGATCTTAAAGCTCTTCTCAAGAAATACACAAAACCAGAATATGGTGCTGTTGCTCGTTGCAGTCCAGCTAAAATTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.68

Weight (kDa)

9.14

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C PF02984 1 - 74 2.8e-20 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 73, 142
AluBI AGCT 3 cut(s) 103, 167, 224
AluI AGCT 3 cut(s) 103, 167, 224
ApeKI GCWGC 2 cut(s) 11, 14
ApoI RAATTY 1 cut(s) 228
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
BbvI GCAGC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 2
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 2 cut(s) 12, 15
BlsI GCNGC 2 cut(s) 13, 16
BmsI GCATC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 197
Bsp143I GATC 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 104
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 36
CviJI RGCY 6 cut(s) 17, 103, 132, 146, 167, 224
CviKI_1 RGCY 6 cut(s) 17, 103, 132, 146, 167, 224
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaiI YATR 3 cut(s) 24, 81, 198
Fnu4HI GCNGC 2 cut(s) 12, 15
Fsp4HI GCNGC 2 cut(s) 12, 15
GluI GCNGC 2 cut(s) 12, 15
GsuI CTGGAG 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 58, 175
HpyAV CCTTC 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 14, 216
HpyF3I CTNAG 1 cut(s) 104
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 174
LpnPI CCDG 4 cut(s) 43, 69, 132, 204
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 107, 161
MluCI AATT 1 cut(s) 228
MseI TTAA 1 cut(s) 162
NdeII GATC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 2 cut(s) 13, 16
PstI CTGCAG 1 cut(s) 16
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 12, 15
Sau3AI GATC 1 cut(s) 157
SetI ASST 4 cut(s) 105, 123, 169, 226
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 228
StyI CCWWGG 1 cut(s) 117
TasI AATT 1 cut(s) 228
TatI WGTACW 1 cut(s) 35
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 2 cut(s) 11, 14
Van91I CCANNNNNTGG 1 cut(s) 197
XapI RAATTY 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.