Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001255

Physical Location & Seq

Genomic Coordinates Forward (+)

2377177 .. 2379919

Gene Structure 2743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1027000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGAGGAAGCCAAACCAGCGGTTGTTTCACAGCAACCCAAAGGTGGTGATGCACTTAGAAGGGACAGGCGAGTTCTTCAGGACATTGGCAATCGCCCCATCACTAGGAGTTTTCATGCACAACTGATAGCAAAGGGACAAGAAAAAGGAGTTAACAATGTGAACCCTGTGGTGCTGCCGGTACTTGATGATAAGCTAGCTCTCAATCGAAAGCGTGTTCCTGCCAAGAAGGTAGTTCCCAGGAAGGAAATTGACAAGCCAAAATCTGATGCTGTGGTTGTTATTAGTTCTGATGAAGGAGAAGAAAAGAAGAAGCCAACACCTGTGAATCGATGCAAGCCTGAAGAAGGGCGGAAGGAAGTCAAGACTCTGACTTCGATCCTCACAGCTCGAAGCAAGGCTATGGCTCTTGGAGTGAACATCAAGCCAAAAGAAAAGATTGTTGAAATCGATTCAGCTGATGTCAACGATGAATTAGCAGTGGTGGAATACATTGATGATTTATACAAGTTCTACAAGCTCACTGAAGATGATAGCCGTGTTCATGACTACATGGATTCTCAGCCAGACATAAATACAAAGATGAGATCAATCCTCATAGACTGGTTGATAGATGTTCACAGGAAATTTGAACTGATGCCTGAAACCTTTTACCTGACTGTAAACATAATTGATCGGTACCTTTCGAAGAAGATTATTTCTAGGAGGGAACTTCAGCTAATTGGTATTAGTTCTATGGTCATAGCATCCAAATATGAGGAAATATGGGCTCCACAGGTGAATGACTTTGTTTGCTTGTCAGACTATGCATACACCAGCGATCAGATACTACGCATGGAGAAAGAAATCCTGGGGAAGCTGGAGTGGTATTTGACAGTTCCCACCCCTTATGTCTTCCTGTCTCGGTACATCAAAGCTTCTGTTTCGCCTGATGAGGAGACGAAGAACATGGTTTTTTTTCTAGCTGAGCTCGGAATCCTGCATTATCCAACTATCATTCTGTACTCCCCATCCATGATATCTGCTGCCGCCGTCTATGCTGCGCGTTATACTCTCAATAAGAATCCTTTCTGGACTGAAACTTTGAAGCACCACACTGGCTATTCTGAAGACCAGTTGAGGGACTGTGCCAAGCTCTTGGTTGGCCTTCACTTGAATGCAGCGGAAAGTAAACTTCAAGCAGTTTACAGGAAATTCTCTAGGCCGGATTATGGTGCTGTTGCTCTTTCCGTTCCAGCCAAAAGTTTTCAGCCATCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

421

Amino Acids

47.81

Weight (kDa)

8.74

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	167 - 292	4.6e-49	Cyclin, N-terminal domain
Cyclin_C	PF02984	294 - 412	2.5e-38	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27185 AT5G01800
fragaria_vesca	FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43460 FvH4_3g43460 FvH4_3g43460
malus_domestica	MD03G1022700.v1.1 MD03G1022800.v1.1 MD11G1027000.v1.1
prunus_persica	Prupe.6G021200_v2.0.a1 Prupe.6G021300_v2.0.a1
pyrus_communis	pycom03g01920 pycom11g02060
rosa_chinensis	RchiOBHm_Chr5g0077531 RchiOBHm_Chr5g0077551 RchiOBHm_Chr5g0077871 RchiOBHm_Chr7g0239321
rosa_laevigata	RLG00000000763 RLG00000006532 RLG00000013630 RLG00000017586 RLG00000022210 RLG00000028417 RLG00000036703 RLG00000036721
rosa_multiflora	Rmu_sc0001018.1_g000034 Rmu_sc0003058.1_g000003 Rmu_sc0004277.1_g000046 Rmu_sc0008456.1_g000002 Rmu_sc0031428.1_g000001 Rmu_ssc0000186.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004310 Rroxscaffold_1G00004440 Rroxscaffold_1G00004450 Rroxscaffold_3G00221010
rosa_rugosa	Rorug05G0455500 Rorug05G0455600 Rorug05G0456800.1 Rorug07G0327300 Rorug07G0327400
rosa_samantha	Rh5AG510200 Rh5AG511200 Rh5BG531900 Rh5BG533900 Rh5DG543900 Rh5DG544000 Rh5DG545300 Rh7AG480700
rosa_wichuraiana	Rw5G047290 Rw5G047440 Rw7G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	678
AccB1I	GGYRCC	1 cut(s)	678
AccII	CGCG	1 cut(s)	1045
AciI	CCGC	4 cut(s)	20, 352, 1029, 1163
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	626, 1193
AcuI	CTGAAG	5 cut(s)	62, 363, 546, 698, 1128
AfaI	GTAC	4 cut(s)	183, 680, 908, 1004
AfiI	CCNNNNNNNGG	5 cut(s)	44, 105, 347, 1120, 1211
AgsI	TTSAA	5 cut(s)	446, 632, 1087, 1156, 1178
AjnI	CCWGG	2 cut(s)	239, 849
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	2 cut(s)	906, 932
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	2 cut(s)	1144, 1202
ApeKI	GCWGC	4 cut(s)	175, 1025, 1040, 1160
ApoI	RAATTY	2 cut(s)	626, 1193
ArsI	GACNNNNNNTTYG	4 cut(s)	358, 390, 1066, 1098
Asp700I	GAANNNNTTC	1 cut(s)	1067
Asp718I	GGTACC	1 cut(s)	678
AspLEI	GCGC	1 cut(s)	1045
AsuHPI	GGTGA	2 cut(s)	59, 790
AsuII	TTCGAA	1 cut(s)	686
AsuNHI	GCTAGC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	678
BanII	GRGCYC	2 cut(s)	772, 972
BbsI	GAAGAC	2 cut(s)	886, 1116
Bbv12I	GWGCWC	1 cut(s)	972
BbvI	GCAGC	4 cut(s)	162, 1012, 1027, 1172
BccI	CCATC	3 cut(s)	107, 1018, 1261
BceAI	ACGGC	2 cut(s)	522, 1016
BciT130I	CCWGG	2 cut(s)	241, 851
BcoDI	GTCTC	2 cut(s)	906, 932
BfaI	CTAG	5 cut(s)	105, 197, 702, 962, 1200
BisI	GCNGC	5 cut(s)	176, 1026, 1029, 1041, 1161
BlpI	GCTNAGC	1 cut(s)	966
BlsI	GCNGC	5 cut(s)	177, 1027, 1030, 1042, 1162
Bme1390I	CCNGG	2 cut(s)	241, 851
BmiI	GGNNCC	2 cut(s)	680, 771
BmrFI	CCNGG	2 cut(s)	241, 851
BmsI	GCATC	5 cut(s)	40, 259, 323, 627, 755
BmtI	GCTAGC	1 cut(s)	200
BpiI	GAAGAC	2 cut(s)	886, 1116
BpmI	CTGGAG	1 cut(s)	881
Bpu1102I	GCTNAGC	1 cut(s)	966
Bpu14I	TTCGAA	1 cut(s)	686
Bsa29I	ATCGAT	2 cut(s)	331, 450
BsaJI	CCNNGG	2 cut(s)	239, 850
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 105, 347, 1120, 1211
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	3 cut(s)	608, 1102, 1114
BseBI	CCWGG	2 cut(s)	241, 851
BseCI	ATCGAT	2 cut(s)	331, 450
BseDI	CCNNGG	2 cut(s)	239, 850
BseGI	GGATG	2 cut(s)	746, 1010
BseLI	CCNNNNNNNGG	5 cut(s)	44, 105, 347, 1120, 1211
BseMII	CTCAG	2 cut(s)	575, 957
BseNI	ACTGG	3 cut(s)	608, 1102, 1114
BseRI	GAGGAG	1 cut(s)	950
BseXI	GCAGC	4 cut(s)	162, 1012, 1027, 1172
Bsh1236I	CGCG	1 cut(s)	1045
BshFI	GGCC	2 cut(s)	1146, 1204
BshNI	GGYRCC	1 cut(s)	678
BshVI	ATCGAT	2 cut(s)	331, 450
BsiHKAI	GWGCWC	1 cut(s)	972
BsiSI	CCGG	2 cut(s)	179, 1205
BslFI	GGGAC	3 cut(s)	77, 150, 1136
BslI	CCNNNNNNNGG	5 cut(s)	44, 105, 347, 1120, 1211
BsmAI	GTCTC	2 cut(s)	906, 932
BsmBI	CGTCTC	1 cut(s)	932
BsmFI	GGGAC	3 cut(s)	77, 150, 1136
BsmI	GAATGC	1 cut(s)	1162
BsnI	GGCC	2 cut(s)	1146, 1204
Bsp119I	TTCGAA	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	772, 972
Bsp143I	GATC	4 cut(s)	378, 587, 673, 820
Bsp1720I	GCTNAGC	1 cut(s)	966
BspACI	CCGC	4 cut(s)	20, 352, 1029, 1163
BspANI	GGCC	2 cut(s)	1146, 1204
BspCNI	CTCAG	2 cut(s)	574, 958
BspDI	ATCGAT	2 cut(s)	331, 450
BspFNI	CGCG	1 cut(s)	1045
BspHI	TCATGA	2 cut(s)	544, 1259
BspLI	GGNNCC	2 cut(s)	680, 771
BspOI	GCTAGC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	686
BspT107I	GGYRCC	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	608, 1102, 1114
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	239, 850
BssMI	GATC	4 cut(s)	378, 587, 673, 820
Bst2UI	CCWGG	2 cut(s)	241, 851
Bst4CI	ACNGT	3 cut(s)	661, 877, 1127
BstBI	TTCGAA	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	198, 338
BstDEI	CTNAG	3 cut(s)	56, 561, 966
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	746, 1010
BstFNI	CGCG	1 cut(s)	1045
BstHHI	GCGC	1 cut(s)	1045
BstKTI	GATC	4 cut(s)	381, 590, 676, 823
BstMAI	GTCTC	2 cut(s)	906, 932
BstMBI	GATC	4 cut(s)	378, 587, 673, 820
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 1037
BstNI	CCWGG	2 cut(s)	241, 851
BstSCI	CCNGG	2 cut(s)	239, 849
BstUI	CGCG	1 cut(s)	1045
BstV1I	GCAGC	4 cut(s)	162, 1012, 1027, 1172
BstV2I	GAAGAC	2 cut(s)	886, 1116
BstXI	CCANNNNNNTGG	1 cut(s)	1138
Bsu15I	ATCGAT	2 cut(s)	331, 450
BsuRI	GGCC	2 cut(s)	1146, 1204
BsuTUI	ATCGAT	2 cut(s)	331, 450
BtsCI	GGATG	2 cut(s)	746, 1010
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	3 cut(s)	486, 522, 1095
Cac8I	GCNNGC	2 cut(s)	198, 338
CciI	TCATGA	2 cut(s)	544, 1259
CfoI	GCGC	1 cut(s)	1045
Cfr10I	RCCGGY	1 cut(s)	178
ClaI	ATCGAT	2 cut(s)	331, 450
Csp6I	GTAC	4 cut(s)	182, 679, 907, 1003
CviAII	CATG	7 cut(s)	116, 545, 553, 835, 949, 1015, 1260
CviQI	GTAC	4 cut(s)	182, 679, 907, 1003
DdeI	CTNAG	3 cut(s)	56, 561, 966
DpnI	GATC	4 cut(s)	380, 589, 675, 822
DpnII	GATC	4 cut(s)	378, 587, 673, 820
EciI	GGCGGA	1 cut(s)	367
Ecl136II	GAGCTC	1 cut(s)	970
Eco24I	GRGCYC	2 cut(s)	772, 972
Eco32I	GATATC	1 cut(s)	1020
Eco53kI	GAGCTC	1 cut(s)	970
Eco57I	CTGAAG	5 cut(s)	62, 363, 546, 698, 1128
EcoICRI	GAGCTC	1 cut(s)	970
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	239, 849
EcoRV	GATATC	1 cut(s)	1020
EcoT22I	ATGCAT	1 cut(s)	811
EcoT38I	GRGCYC	2 cut(s)	772, 972
Esp3I	CGTCTC	1 cut(s)	932
FaeI	CATG	7 cut(s)	119, 548, 556, 838, 952, 1018, 1263
FaqI	GGGAC	3 cut(s)	77, 150, 1136
FatI	CATG	7 cut(s)	115, 544, 552, 834, 948, 1014, 1259
Fnu4HI	GCNGC	5 cut(s)	176, 1026, 1029, 1041, 1161
FokI	GGATG	2 cut(s)	733, 997
FriOI	GRGCYC	2 cut(s)	772, 972
Fsp4HI	GCNGC	5 cut(s)	176, 1026, 1029, 1041, 1161
FspBI	CTAG	5 cut(s)	105, 197, 702, 962, 1200
GlaI	GCGC	1 cut(s)	1044
GluI	GCNGC	5 cut(s)	176, 1026, 1029, 1041, 1161
GsuI	CTGGAG	1 cut(s)	881
HaeIII	GGCC	2 cut(s)	1146, 1204
HapII	CCGG	2 cut(s)	179, 1205
HhaI	GCGC	1 cut(s)	1045
Hin1II	CATG	7 cut(s)	119, 548, 556, 838, 952, 1018, 1263
Hin6I	GCGC	1 cut(s)	1043
HinP1I	GCGC	1 cut(s)	1043
HincII	GTYRAC	2 cut(s)	154, 466
HindII	GTYRAC	2 cut(s)	154, 466
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	6 cut(s)	328, 367, 452, 557, 975, 1063
HpaI	GTTAAC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	179, 1205
HphI	GGTGA	2 cut(s)	59, 790
Hpy166II	GTNNAC	8 cut(s)	154, 163, 418, 466, 619, 664, 1172, 1186
Hpy188I	TCNGA	7 cut(s)	268, 292, 372, 802, 825, 974, 1108
Hpy188III	TCNNGA	5 cut(s)	80, 364, 545, 1072, 1260
Hpy8I	GTNNAC	8 cut(s)	154, 163, 418, 466, 619, 664, 1172, 1186
HpyAV	CCTTC	7 cut(s)	54, 223, 238, 290, 341, 349, 1157
HpyCH4III	ACNGT	3 cut(s)	661, 877, 1127
HpyCH4V	TGCA	6 cut(s)	53, 119, 336, 809, 982, 1160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 1037
HpyF3I	CTNAG	3 cut(s)	56, 561, 966
Hsp92II	CATG	7 cut(s)	119, 548, 556, 838, 952, 1018, 1263
HspAI	GCGC	1 cut(s)	1043
KpnI	GGTACC	1 cut(s)	682
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	378, 587, 673, 820
LmnI	GCTCC	1 cut(s)	775
Lsp1109I	GCAGC	4 cut(s)	162, 1012, 1027, 1172
LweI	GCATC	5 cut(s)	40, 259, 323, 627, 755
MaeI	CTAG	5 cut(s)	105, 197, 702, 962, 1200
MalI	GATC	4 cut(s)	380, 589, 675, 822
MboI	GATC	4 cut(s)	378, 587, 673, 820
MhlI	GDGCHC	2 cut(s)	772, 972
MluCI	AATT	6 cut(s)	249, 473, 626, 669, 720, 1193
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	1013
MnlI	CCTC	6 cut(s)	392, 605, 699, 751, 928, 1113
Mph1103I	ATGCAT	1 cut(s)	811
MroXI	GAANNNNTTC	1 cut(s)	1067
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	2 cut(s)	1155, 1258
MspA1I	CMGCKG	3 cut(s)	20, 458, 1163
MspI	CCGG	2 cut(s)	179, 1205
MspR9I	CCNGG	2 cut(s)	241, 851
Mva1269I	GAATGC	1 cut(s)	1162
MvaI	CCWGG	2 cut(s)	241, 851
MvnI	CGCG	1 cut(s)	1045
MwoI	GCNNNNNNNGC	2 cut(s)	17, 1037
NdeII	GATC	4 cut(s)	378, 587, 673, 820
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	7 cut(s)	119, 548, 556, 838, 952, 1018, 1263
NlaIV	GGNNCC	2 cut(s)	680, 771
NsiI	ATGCAT	1 cut(s)	811
NspV	TTCGAA	1 cut(s)	686
PagI	TCATGA	2 cut(s)	544, 1259
PctI	GAATGC	1 cut(s)	1162
PdmI	GAANNNNTTC	1 cut(s)	1067
PfeI	GAWTC	5 cut(s)	328, 452, 557, 975, 1063
PkrI	GCNGC	5 cut(s)	177, 1027, 1030, 1042, 1162
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	972
Psp6I	CCWGG	2 cut(s)	239, 849
PspGI	CCWGG	2 cut(s)	239, 849
PspN4I	GGNNCC	2 cut(s)	680, 771
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	4 cut(s)	183, 680, 908, 1004
RsaNI	GTAC	4 cut(s)	182, 679, 907, 1003
RseI	CAYNNNNRTG	2 cut(s)	1155, 1258
SacI	GAGCTC	1 cut(s)	972
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	5 cut(s)	176, 1026, 1029, 1041, 1161
Sau3AI	GATC	4 cut(s)	378, 587, 673, 820
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	241, 851
SduI	GDGCHC	2 cut(s)	772, 972
SfaNI	GCATC	5 cut(s)	40, 259, 323, 627, 755
SfuI	TTCGAA	1 cut(s)	686
SmiMI	CAYNNNNRTG	2 cut(s)	1155, 1258
Sse9I	AATT	6 cut(s)	249, 473, 626, 669, 720, 1193
SsiI	CCGC	4 cut(s)	20, 352, 1029, 1163
SspMI	CTAG	5 cut(s)	105, 197, 702, 962, 1200
SstI	GAGCTC	1 cut(s)	972
StyD4I	CCNGG	2 cut(s)	239, 849
TaaI	ACNGT	3 cut(s)	661, 877, 1127
TaqI	TCGA	6 cut(s)	208, 331, 377, 391, 450, 686
TasI	AATT	6 cut(s)	249, 473, 626, 669, 720, 1193
TatI	WGTACW	1 cut(s)	1002
TauI	GCSGC	1 cut(s)	1031
TfiI	GAWTC	5 cut(s)	328, 452, 557, 975, 1063
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	3 cut(s)	486, 529, 1102
TseI	GCWGC	4 cut(s)	175, 1025, 1040, 1160
TspDTI	ATGAA	5 cut(s)	104, 309, 486, 533, 1248
TspGWI	ACGGA	1 cut(s)	1219
TspRI	CASTG	3 cut(s)	486, 529, 1102
XagI	CCTNNNNNAGG	1 cut(s)	345
XapI	RAATTY	2 cut(s)	626, 1193
XmnI	GAANNNNTTC	1 cut(s)	1067
XspI	CTAG	5 cut(s)	105, 197, 702, 962, 1200
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.