Rorug05G0455500

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001255
Physical Location & Seq
Reverse (-)
62903010 .. 62906283
3274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0455500.1

Sequence Viewer

Length: 2766 bp
ATGAAGCTCACTCGTCCACATCGTCCCCTCCCAAACCCTCTCATTCACGCTAAACCCAGAAATCTCAGTACCTCTTCCAATTCAACCCCCAAAGATAATGACGAAAACGACGACCCCCACTTCATTTCCAACCTATCCGACGTCGTTCGAGGGAAGCAGAGCTGGAGAATCGCCTTCAGCGACCCCTTCATTTCGAGCTCGTTAAAACCCCACCACGTCGAGAAGGTTCTGATCCAGAACGTAAGGAATCCCAGGTTAGCCTTGCGCTTCTTTAATTTTCTGGGCTTGCATAAATCCTTCAACCACTCAACGGCGTCGTTTTGCATTCTGATTCACGCCCTCGTTCAGTGTAGCCTCTTTTGGCCTGCCACCTCGCTTTTACAGACCCTCTTGCTTCGTGGGTTGAACCCAACTGAGGTTTTCCAGTCCCTTTTGAATTCATATAAGAAATTTAATTGCGCGACGGGTTTGGGTTTTGATTTGTTGGTGCAAAACTATGTGCAAAATAAGAGAGTGTTGGATGGTGTTGTGGTTGTGAGGTTGATGAGGGAGTGTAAAATGGTGCCTGAAGTTAGAACCTTGAATACTCTTTTAAATGGGTTGGTGAGAATTAGGCATTTCAATATGGTTTTGCAGCTGTTTGATGAGTTGGTCAATGTTGGTCTTCGGCCGGATGCTTATATGTACACTGTGGTGGTTAGGAGTTTGTGTGAGTTGAAGGATTTGCATAAGGCTAATGAAGTGATTCGGTACGTGGAATCAAATGGGTGTGAGTTGAGTGTTGTTACGTATAATGTGTTGATTCATGGGCTCTGCAAGAGCCAGAGAGTTTGGGAGGCGGTAGAAATCAAGAATTCATTGAGTCGAAAGGGATTGAAAGCGGATATGGTTACTTATTGTACATTGGTGCTTGGGTTGTGTAAAGTGCAAGAATTTGAGGTTGGTGTGGAGCTAATGAAGGAAATGATTCAGCTGGGGTTTGTTCCAAGTGCAGCGGCTCTTTCGGGTCTTATGGAGGGATTGAGGAGGAAGGGGAAGATTGGAGATGCTTTTGATTTAGTGAACAGAATGGGAGAAGTTGGGGTGGTGCCTAATTTGTTTGCTTATAATGCATTGATCAATTCTTTGTGTAAAGACGGTAAGCTGGATGAGGCAGAATTACTCTTTGACAACATGGGGACGAAGGGTTTGTTTCCCAATGATGTTACATATTCTATTTTGATTGATTCATTCTGTCGAAGGGGGATATTGGACACTGCACATTGTTATTTTAATAAAATGATCAATGCTAGGATTAGATTAACTGTATATCCCTACAATTCTTTGATAAGTGGGGAGTGCAAGTTTGGAAAGTTGAGTGTGGCGGAATCTCTCTTCAGTGAGATGATGAGTAGAAGTGTGGAACCAACTGTTGTTACTTATACGTCACTGATAAGTGGATACTGTAAAGGAGGAGAACTGCAGAAGGCATTTACACTGTATCATGAAATGATGGGAAGAGGCATTGCACCAAACACTTATACCTTCTCTGCAATTATTTCAGGTCTTTGTCGTGCAAGCATGATGGCTGAAGCAAGTAAATTCTTTGATGAAATGGTGGAAAGGGGCATTATGCCAAACGAGGTGACATACAATCTTTTGATTGATGGGTACTGTAGGGAAGGTAACATTACTAGAGCTTTTGAATTGCTTGATGAAATGCTCAAAAGGGGTCTTCTACCGGACACATATACATATAGACCCTTAATAAGTGGTCTTTGTTCCACGAGTGGAGTGTCCGAAGCCAAAAAGTTTGTAGATGACCTTCACAAGAAGAATTATAAGTTAAATGAGATGTGCTACAGTGCACTGCTATATGGTTATTGCAAGGAAGGAAGATTATATGATGCATTAGGTGCCTGTCGTGACATGAGTGAAAGAGGAGTAGACATGGATCTGGTGTGTTATGCCATACTCATCTGTGGAGCTTTGAAACAACAGGATACCCGACAATTATTTGGTCTCATAAACGAGATGCATAGTCAAGGATTGAGGCCTGATAATGTAATCTATACAAGTATGATTGATGCATATGGGAAAACAGGAAAACTTGATAAGGCATTTGGACTTTGGGATATAATGGTTGGTGAAGGATGCTCTCCTAATGTTGTAACATACACAGCCTTGATCTATGGATTATGTAAGGCAGGCTGTATTGATAAAGCCGAGCTTCTTTGCAAGGATATGCTCGTCGGTGATGCCCTTCCCAATCATGTCACATATGGTTGTTTCCTAGATCACTTCAGCAAAGAAGGTAGCATGGAGAAAGCTGTGCAACTGCACAACACCATGCTTGCTGGGTTCTCAGCCAATACTGTCACATACAATATACTTATAAGGGGTTTCTGCAAAATGGGTAAGTTTCATGAAGCTTCAGAACTCTTGCTTGAGATGACAAACAATGGTGTTTACCCCGATTGCATCACCTATTCAACATTTATCTTTGAGTATTGTAGGATGGGCAATTTGCTAGAAGCTGTTAGGTTGTGGGATGTTATGCTAGATAGGGGTCTGAAGCCTGATATTCTAGCATATAACTTTTTGATATATGGTTGCTGTGTCACTGGAGAACTAACCAAGGCTTTTGAGTTGCGTGATGACATGATGAGAAGAGGGCTGAAGCCAAATCAAGTTACATATAACACACTAAGTCGTGGAACTTGCCTTACTAGGTTAGGAGGTGTAGGAGTCTTAAGAGACAGTGTAATGTATCAACAAATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

921

Amino Acids

103.64

Weight (kDa)

8.22

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 189 - 237 1.2e-08 PPR repeat family
PPR_3 PF13812 213 - 269 3.4e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 229 - 273 1.8e-08 PPR repeat family
PPR_1 PF12854 255 - 283 5.5e-09 PPR repeat
PPR_2 PF13041 260 - 308 1.7e-12 PPR repeat family
PPR_long PF17177 313 - 428 1e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 337 - 378 3.3e-08 PPR repeat family
PPR_3 PF13812 354 - 411 4.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 361 - 392 1.3e-11 PPR repeat
PPR_2 PF13041 364 - 413 2.1e-17 PPR repeat family
PPR PF01535 368 - 397 1.9e-07 PPR repeat
PPR_1 PF12854 395 - 427 9.3e-09 PPR repeat
PPR_3 PF13812 425 - 479 5.4e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 438 - 483 1.2e-14 PPR repeat family
PPR PF01535 439 - 466 5.7e-06 PPR repeat
PPR_3 PF13812 457 - 514 5.8e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 466 - 497 1.5e-11 PPR repeat
PPR_2 PF13041 469 - 518 7.3e-19 PPR repeat family
PPR PF01535 472 - 502 2.1e-09 PPR repeat
PPR_1 PF12854 500 - 533 3.7e-11 PPR repeat
PPR PF01535 507 - 537 7.2e-07 PPR repeat
PPR_2 PF13041 511 - 553 1.4e-14 PPR repeat family
PPR_long PF17177 522 - 626 2.2e-08 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 525 - 632 1.5e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 529 - 584 1.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 535 - 567 1e-14 PPR repeat
PPR_2 PF13041 539 - 587 2.7e-19 PPR repeat family
PPR PF01535 542 - 572 7.2e-10 PPR repeat
PPR_2 PF13041 610 - 655 3.1e-07 PPR repeat family
PPR_3 PF13812 668 - 723 1.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 676 - 708 1.5e-07 PPR repeat
PPR_2 PF13041 679 - 728 3.3e-17 PPR repeat family
PPR PF01535 682 - 712 4.3e-08 PPR repeat
PPR_long PF17177 699 - 779 7.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 711 - 742 4.5e-11 PPR repeat
PPR_2 PF13041 714 - 760 2e-09 PPR repeat family
PPR_3 PF13812 776 - 827 6.8e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 780 - 811 3.3e-11 PPR repeat
PPR_2 PF13041 784 - 832 1.7e-15 PPR repeat family
PPR PF01535 786 - 816 7.2e-09 PPR repeat
PPR_1 PF12854 814 - 846 2.3e-09 PPR repeat
PPR_2 PF13041 821 - 866 7e-11 PPR repeat family
PPR_3 PF13812 843 - 896 3e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 849 - 881 1.6e-06 PPR repeat
PPR_2 PF13041 853 - 901 2.1e-14 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1107, 1821, 2375
AatII GACGTC 1 cut(s) 144
AccB1I GGYRCC 3 cut(s) 562, 1087, 1895
AccI GTMKAC 1 cut(s) 1926
AccII CGCG 1 cut(s) 461
AciI CCGC 4 cut(s) 839, 881, 995, 1364
AclWI GGATC 2 cut(s) 226, 1941
AcoI YGGCCR 1 cut(s) 668
AcsI RAATTY 5 cut(s) 436, 449, 853, 932, 1580
AcuI CTGAAG 8 cut(s) 160, 588, 1360, 1590, 2266, 2397, 2573, 2678
AcyI GRCGYC 2 cut(s) 141, 314
AfaI GTAC 5 cut(s) 70, 686, 752, 901, 1652
AfiI CCNNNNNNNGG 2 cut(s) 310, 415
AflII CTTAAG 1 cut(s) 2731
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
AleI CACNNNNGTG 1 cut(s) 692
Alw21I GWGCWC 2 cut(s) 200, 1849
Alw26I GTCTC 2 cut(s) 2006, 2730
Alw44I GTGCAC 1 cut(s) 1845
AlwI GGATC 2 cut(s) 226, 1941
AoxI GGCC 3 cut(s) 362, 668, 2033
ApaLI GTGCAC 1 cut(s) 1845
ApeKI GCWGC 2 cut(s) 634, 992
ApoI RAATTY 5 cut(s) 436, 449, 853, 932, 1580
ArsI GACNNNNNNTTYG 2 cut(s) 1171, 1203
Asp700I GAANNNNTTC 2 cut(s) 744, 966
AspLEI GCGC 2 cut(s) 267, 461
AsuHPI GGTGA 5 cut(s) 616, 1636, 2138, 2246, 2455
BaeGI GKGCMC 1 cut(s) 1849
BanI GGYRCC 3 cut(s) 562, 1087, 1895
BanII GRGCYC 2 cut(s) 200, 813
BarI GAAGNNNNNNTAC 2 cut(s) 1788, 1820
BauI CACGAG 1 cut(s) 1765
BbsI GAAGAC 2 cut(s) 656, 1706
Bbv12I GWGCWC 2 cut(s) 200, 1849
BbvI GCAGC 2 cut(s) 646, 1004
BccI CCATC 5 cut(s) 515, 1486, 1558, 1640, 2491
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 253
BciVI GTATCC 2 cut(s) 1433, 1975
BclI TGATCA 2 cut(s) 1116, 1281
BcoDI GTCTC 2 cut(s) 2006, 2730
BfaI CTAG 7 cut(s) 1290, 1674, 2273, 2510, 2540, 2567, 2709
BfmI CTRYAG 3 cut(s) 1460, 1654, 1840
BfrI CTTAAG 1 cut(s) 2731
BfuI GTATCC 2 cut(s) 1433, 1975
BisI GCNGC 3 cut(s) 635, 993, 996
BlsI GCNGC 3 cut(s) 636, 994, 997
Bme1390I CCNGG 1 cut(s) 253
BmgBI CACGTC 1 cut(s) 217
BmiI GGNNCC 4 cut(s) 564, 1089, 1404, 1897
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 8 cut(s) 664, 1036, 1876, 2004, 2056, 2123, 2227, 2469
BpiI GAAGAC 2 cut(s) 656, 1706
BpmI CTGGAG 2 cut(s) 184, 2625
BpuEI CTTGAG 1 cut(s) 2447
BsaAI YACGTR 2 cut(s) 754, 789
BsaHI GRCGYC 2 cut(s) 141, 314
BsaI GGTCTC 1 cut(s) 2006
BsaJI CCNNGG 2 cut(s) 251, 2616
BsaWI WCCGGW 1 cut(s) 1720
BsaXI ACNNNNNCTCC 4 cut(s) 694, 724, 1328, 1358
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 415
Bse1I ACTGG 2 cut(s) 424, 2608
Bse3DI GCAATG 1 cut(s) 1503
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 251, 2616
BseGI GGATG 6 cut(s) 526, 679, 1153, 2138, 2502, 2536
BseLI CCNNNNNNNGG 2 cut(s) 310, 415
BseMI GCAATG 1 cut(s) 1503
BseMII CTCAG 3 cut(s) 79, 405, 2358
BseNI ACTGG 2 cut(s) 424, 2608
BseRI GAGGAG 3 cut(s) 1039, 1467, 1935
BseSI GKGCMC 1 cut(s) 1849
BseX3I CGGCCG 1 cut(s) 668
BseXI GCAGC 2 cut(s) 646, 1004
BseYI CCCAGC 2 cut(s) 973, 2336
BsgI GTGCAG 3 cut(s) 1011, 1242, 2303
Bsh1236I CGCG 1 cut(s) 461
Bsh1285I CGRYCG 1 cut(s) 671
BshFI GGCC 3 cut(s) 364, 670, 2035
BshNI GGYRCC 3 cut(s) 562, 1087, 1895
BsiEI CGRYCG 1 cut(s) 671
BsiHKAI GWGCWC 2 cut(s) 200, 1849
BsiSI CCGG 2 cut(s) 671, 1721
BslFI GGGAC 3 cut(s) 9, 412, 1192
BslI CCNNNNNNNGG 2 cut(s) 310, 415
BsmAI GTCTC 2 cut(s) 2006, 2730
BsmFI GGGAC 3 cut(s) 9, 412, 1192
BsmI GAATGC 1 cut(s) 324
BsnI GGCC 3 cut(s) 364, 670, 2035
Bso31I GGTCTC 1 cut(s) 2006
Bsp1286I GDGCHC 3 cut(s) 200, 813, 1849
Bsp1407I TGTACA 2 cut(s) 684, 899
Bsp143I GATC 6 cut(s) 231, 1116, 1281, 1933, 2166, 2275
BspACI CCGC 4 cut(s) 839, 881, 995, 1364
BspANI GGCC 3 cut(s) 364, 670, 2035
BspCNI CTCAG 3 cut(s) 78, 406, 2357
BspFNI CGCG 1 cut(s) 461
BspHI TCATGA 2 cut(s) 1483, 2404
BspLI GGNNCC 4 cut(s) 564, 1089, 1404, 1897
BspMAI CTGCAG 1 cut(s) 1464
BspPI GGATC 2 cut(s) 226, 1941
BspT107I GGYRCC 3 cut(s) 562, 1087, 1895
BspTI CTTAAG 1 cut(s) 2731
BspTNI GGTCTC 1 cut(s) 2006
BsrDI GCAATG 1 cut(s) 1503
BsrGI TGTACA 2 cut(s) 684, 899
BsrI ACTGG 2 cut(s) 424, 2608
BssECI CCNNGG 2 cut(s) 251, 2616
BssMI GATC 6 cut(s) 231, 1116, 1281, 1933, 2166, 2275
BssNI GRCGYC 2 cut(s) 141, 314
BssSI CACGAG 1 cut(s) 1765
BssT1I CCWWGG 1 cut(s) 2616
Bst2BI CACGAG 1 cut(s) 1765
Bst2UI CCWGG 1 cut(s) 253
Bst6I CTCTTC 4 cut(s) 79, 1379, 1492, 2644
BstACI GRCGYC 2 cut(s) 141, 314
BstAFI CTTAAG 1 cut(s) 2731
BstAPI GCANNNNNTGC 1 cut(s) 1895
BstAUI TGTACA 2 cut(s) 684, 899
BstBAI YACGTR 2 cut(s) 754, 789
BstC8I GCNNGC 5 cut(s) 287, 366, 1558, 2188, 2334
BstDEI CTNAG 4 cut(s) 65, 414, 2344, 2687
BstF5I GGATG 6 cut(s) 526, 679, 1153, 2138, 2502, 2536
BstFNI CGCG 1 cut(s) 461
BstHHI GCGC 2 cut(s) 267, 461
BstKTI GATC 6 cut(s) 234, 1119, 1284, 1936, 2169, 2278
BstMAI GTCTC 2 cut(s) 2006, 2730
BstMBI GATC 6 cut(s) 231, 1116, 1281, 1933, 2166, 2275
BstMCI CGRYCG 1 cut(s) 671
BstMWI GCNNNNNNNGC 2 cut(s) 1109, 1895
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 3 cut(s) 1460, 1654, 1840
BstSLI GKGCMC 1 cut(s) 1849
BstSNI TACGTA 1 cut(s) 789
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 2 cut(s) 646, 1004
BstV2I GAAGAC 2 cut(s) 656, 1706
BstX2I RGATCY 1 cut(s) 1933
BstYI RGATCY 1 cut(s) 1933
BstZI CGGCCG 1 cut(s) 668
BsuI GTATCC 2 cut(s) 1433, 1975
BsuRI GGCC 3 cut(s) 364, 670, 2035
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 6 cut(s) 526, 679, 1153, 2138, 2502, 2536
BtsI GCAGTG 2 cut(s) 1254, 1847
Cac8I GCNNGC 5 cut(s) 287, 366, 1558, 2188, 2334
CciI TCATGA 2 cut(s) 1483, 2404
CfoI GCGC 2 cut(s) 267, 461
CseI GACGC 1 cut(s) 303
Csp6I GTAC 5 cut(s) 69, 685, 751, 900, 1651
CviQI GTAC 5 cut(s) 69, 685, 751, 900, 1651
DdeI CTNAG 4 cut(s) 65, 414, 2344, 2687
DpnI GATC 6 cut(s) 233, 1118, 1283, 1935, 2168, 2277
DpnII GATC 6 cut(s) 231, 1116, 1281, 1933, 2166, 2275
DraI TTTAAA 1 cut(s) 594
EaeI YGGCCR 1 cut(s) 668
EagI CGGCCG 1 cut(s) 668
Eam1104I CTCTTC 4 cut(s) 79, 1379, 1492, 2644
EarI CTCTTC 4 cut(s) 79, 1379, 1492, 2644
EciI GGCGGA 1 cut(s) 1379
Ecl136II GAGCTC 1 cut(s) 198
EclXI CGGCCG 1 cut(s) 668
Eco105I TACGTA 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 2616
Eco147I AGGCCT 1 cut(s) 2035
Eco24I GRGCYC 2 cut(s) 200, 813
Eco31I GGTCTC 1 cut(s) 2006
Eco52I CGGCCG 1 cut(s) 668
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 8 cut(s) 160, 588, 1360, 1590, 2266, 2397, 2573, 2678
EcoICRI GAGCTC 1 cut(s) 198
EcoRI GAATTC 2 cut(s) 436, 853
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 2616
EcoT22I ATGCAT 4 cut(s) 1114, 1891, 2019, 2071
EcoT38I GRGCYC 2 cut(s) 200, 813
ErhI CCWWGG 1 cut(s) 2616
FalI AAGNNNNNCTT 2 cut(s) 2193, 2225
FaqI GGGAC 3 cut(s) 9, 412, 1192
FauNDI CATATG 2 cut(s) 2071, 2260
FbaI TGATCA 2 cut(s) 1116, 1281
FblI GTMKAC 1 cut(s) 1926
Fnu4HI GCNGC 3 cut(s) 635, 993, 996
FokI GGATG 6 cut(s) 533, 686, 1160, 2145, 2509, 2543
FriOI GRGCYC 2 cut(s) 200, 813
Fsp4HI GCNGC 3 cut(s) 635, 993, 996
FspBI CTAG 7 cut(s) 1290, 1674, 2273, 2510, 2540, 2567, 2709
GlaI GCGC 2 cut(s) 266, 460
GluI GCNGC 3 cut(s) 635, 993, 996
GsaI CCCAGC 2 cut(s) 977, 2340
GsuI CTGGAG 2 cut(s) 184, 2625
HaeIII GGCC 3 cut(s) 364, 670, 2035
HapII CCGG 2 cut(s) 671, 1721
HgaI GACGC 1 cut(s) 303
HhaI GCGC 2 cut(s) 267, 461
Hin1I GRCGYC 2 cut(s) 141, 314
Hin6I GCGC 2 cut(s) 265, 459
HinP1I GCGC 2 cut(s) 265, 459
HindIII AAGCTT 1 cut(s) 2409
HpaII CCGG 2 cut(s) 671, 1721
HphI GGTGA 5 cut(s) 616, 1636, 2138, 2246, 2455
Hpy166II GTNNAC 6 cut(s) 17, 687, 1063, 1847, 1927, 2449
Hpy188I TCNGA 6 cut(s) 139, 231, 330, 1780, 2416, 2553
Hpy188III TCNNGA 6 cut(s) 220, 235, 850, 1484, 1904, 2405
Hpy8I GTNNAC 6 cut(s) 17, 687, 1063, 1847, 1927, 2449
Hpy99I CGWCG 7 cut(s) 113, 143, 146, 221, 319, 466, 2234
HpyCH4IV ACGT 6 cut(s) 141, 216, 240, 753, 788, 1424
HpyF10VI GCNNNNNNNGC 2 cut(s) 1109, 1895
HpyF3I CTNAG 4 cut(s) 65, 414, 2344, 2687
HpySE526I ACGT 6 cut(s) 141, 216, 240, 753, 788, 1424
Hsp92I GRCGYC 2 cut(s) 141, 314
HspAI GCGC 2 cut(s) 265, 459
Ksp22I TGATCA 2 cut(s) 1116, 1281
Kzo9I GATC 6 cut(s) 231, 1116, 1281, 1933, 2166, 2275
LmnI GCTCC 2 cut(s) 949, 1964
Lsp1109I GCAGC 2 cut(s) 646, 1004
LweI GCATC 8 cut(s) 664, 1036, 1876, 2004, 2056, 2123, 2227, 2469
MaeI CTAG 7 cut(s) 1290, 1674, 2273, 2510, 2540, 2567, 2709
MaeII ACGT 6 cut(s) 141, 216, 240, 753, 788, 1424
MalI GATC 6 cut(s) 233, 1118, 1283, 1935, 2168, 2277
MboI GATC 6 cut(s) 231, 1116, 1281, 1933, 2166, 2275
MboII GAAGA 9 cut(s) 66, 656, 1048, 1366, 1509, 1706, 1825, 1887, 2661
MflI RGATCY 1 cut(s) 1933
MhlI GDGCHC 3 cut(s) 200, 813, 1849
MlyI GAGTC 2 cut(s) 871, 2736
MmeI TCCRAC 3 cut(s) 153, 162, 498
Mph1103I ATGCAT 4 cut(s) 1114, 1891, 2019, 2071
MroXI GAANNNNTTC 2 cut(s) 744, 966
MseI TTAA 9 cut(s) 203, 273, 453, 593, 1272, 1301, 1745, 1826, 2732
MslI CAYNNNNRTG 1 cut(s) 692
MspA1I CMGCKG 3 cut(s) 637, 973, 995
MspCI CTTAAG 1 cut(s) 2731
MspI CCGG 2 cut(s) 671, 1721
MspR9I CCNGG 1 cut(s) 253
Mva1269I GAATGC 1 cut(s) 324
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 1109, 1895
NdeI CATATG 2 cut(s) 2071, 2260
NdeII GATC 6 cut(s) 231, 1116, 1281, 1933, 2166, 2275
NlaIV GGNNCC 4 cut(s) 564, 1089, 1404, 1897
NmeAIII GCCGAG 1 cut(s) 2230
NmuCI GTSAC 6 cut(s) 1425, 1624, 1904, 2254, 2356, 2599
NsiI ATGCAT 4 cut(s) 1114, 1891, 2019, 2071
OliI CACNNNNGTG 1 cut(s) 692
PagI TCATGA 2 cut(s) 1483, 2404
PceI AGGCCT 1 cut(s) 2035
PcsI WCGNNNNNNNCGW 3 cut(s) 19, 108, 177
PctI GAATGC 1 cut(s) 324
PdmI GAANNNNTTC 2 cut(s) 744, 966
PfeI GAWTC 9 cut(s) 168, 247, 331, 745, 758, 802, 967, 1226, 1367
PkrI GCNGC 3 cut(s) 636, 994, 997
PleI GAGTC 2 cut(s) 870, 2735
PpsI GAGTC 2 cut(s) 870, 2735
Ppu21I YACGTR 2 cut(s) 754, 789
PsiI TTATAA 3 cut(s) 1107, 1821, 2375
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 2 cut(s) 973, 2336
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 4 cut(s) 564, 1089, 1404, 1897
PsrI GAACNNNNNNTAC 4 cut(s) 568, 600, 2689, 2721
PstI CTGCAG 1 cut(s) 1464
PsuI RGATCY 1 cut(s) 1933
PvuII CAGCTG 2 cut(s) 637, 973
RsaI GTAC 5 cut(s) 70, 686, 752, 901, 1652
RsaNI GTAC 5 cut(s) 69, 685, 751, 900, 1651
RseI CAYNNNNRTG 1 cut(s) 692
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 9 cut(s) 203, 273, 453, 593, 1272, 1301, 1745, 1826, 2732
SatI GCNGC 3 cut(s) 635, 993, 996
Sau3AI GATC 6 cut(s) 231, 1116, 1281, 1933, 2166, 2275
SchI GAGTC 2 cut(s) 871, 2736
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 3 cut(s) 200, 813, 1849
SfaNI GCATC 8 cut(s) 664, 1036, 1876, 2004, 2056, 2123, 2227, 2469
SfcI CTRYAG 3 cut(s) 1460, 1654, 1840
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 2 cut(s) 2426, 2731
SmoI CTYRAG 2 cut(s) 2426, 2731
SnaBI TACGTA 1 cut(s) 789
SseBI AGGCCT 1 cut(s) 2035
SsiI CCGC 4 cut(s) 839, 881, 995, 1364
SspMI CTAG 7 cut(s) 1290, 1674, 2273, 2510, 2540, 2567, 2709
SstI GAGCTC 1 cut(s) 200
StuI AGGCCT 1 cut(s) 2035
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 2616
TaiI ACGT 6 cut(s) 144, 219, 243, 756, 791, 1427
TaqI TCGA 5 cut(s) 148, 194, 219, 865, 1237
TatI WGTACW 2 cut(s) 684, 899
TauI GCSGC 1 cut(s) 998
TfiI GAWTC 9 cut(s) 168, 247, 331, 745, 758, 802, 967, 1226, 1367
Tru1I TTAA 9 cut(s) 203, 273, 453, 593, 1272, 1301, 1745, 1826, 2732
Tru9I TTAA 9 cut(s) 203, 273, 453, 593, 1272, 1301, 1745, 1826, 2732
TseFI GTSAC 6 cut(s) 1425, 1624, 1904, 2254, 2356, 2599
TseI GCWGC 2 cut(s) 634, 992
Tsp45I GTSAC 6 cut(s) 1425, 1624, 1904, 2254, 2356, 2599
Vha464I CTTAAG 1 cut(s) 2731
VneI GTGCAC 1 cut(s) 1845
XapI RAATTY 5 cut(s) 436, 449, 853, 932, 1580
XmiI GTMKAC 1 cut(s) 1926
XmnI GAANNNNTTC 2 cut(s) 744, 966
XspI CTAG 7 cut(s) 1290, 1674, 2273, 2510, 2540, 2567, 2709
ZraI GACGTC 1 cut(s) 142
Zsp2I ATGCAT 4 cut(s) 1114, 1891, 2019, 2071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.