FvH4_3g43460

cell division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001255
Physical Location & Seq
Forward (+)
36214713 .. 36217894
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43460.t1

Sequence Viewer

Length: 1272 bp
ATGGACACCAGAGCAGTTGTTCCTCCACAACCCAGAGGGGATGGTAAAGTCCATGGAGAAGCACCAAGAAGGAACCAGCGAGTAGCTCTTAGTGATAGGACAAATGTTCAGGCAGGTCAGGTGACTCGGGTCGAAATCAAAGGGAAGCCCCCTCTTCAGATTAATCGCCCCCTGACAAGGAGATTTCATGCCCAACTGTTATCAAATGATGACAAAAAGAACAATGTGAAAAAAGTGCTCGGTGTTGTAGACCAGGCAGCTCAAAATAGAAAATGCGCCCCTACAAGGAATGTTACTGAGAAGGCAACTGATAAAGAGAAGGAGAAGCTTGTCAATATAAGCAAGCCAGTACAAGGTCCAAGGAAGGATGTCAAGGCTTTCACTTCAACACTAACAGCTCGAAGCAAGGCTATGGCTTGTGGAGTCGCCAACAAACCAAAAGAGCAGATTGTGGATTTTGACGCAGCTGATGTCAATGATGAACTAGCAGGTGTTGAGTACGTTGATGAATTGTACAAGTTTTACAAACTTGATGAGGAGAACAGCCAAGTTGGAGATTACATGGACAAACAGCCAGATCTTAATTCGAAGATGAGGGCTATCCTTGTAGACTGGTTGATAGATGTTCACAGGAAATTTGATCTAACGCCTGAAACATTCTACCTCACCGTGAATATAACTGACCGATTCCTTTCAAGGAGGATGGTAAGTAGGAAGGAACTTCAGCTAGTTGGCATCAGTTCTATGGTGATAGCATCGAAGTATGAGGAAGTTTGGGCTCCACCGGTTCAGGATTTTGTGTGCTTATCAGACAAAACCTATACAGGCAGTCAGATTCGTGCAATGGAGAAAGCGATCTTGGAGAAGTTGGGGTGGTATTTGACAGTTCCTACACCTTATGTCTTTCTTGCTAGATATATCAAAGCATCCATTGCACCTGATGATGAGATGAGGCATATGGTTTTCTTTCTAGCTGAACTTGGAGCCTTGGATTATCAAACAACCATACGGTACTCCCCATCCATGATAGCTGCTGCAGCCGTCTATGCTGCCCGTTGTACCCTCAACAAGAAGACTTTCTGGACTGAAACTCTGAAGCACCACACTGGCTACTCTGAAGAACAGTTGAGGGAATGTGCCAAGGCCTTGGTTGGCTTTCACTGCAAGGCTGCTGAAAGTGATCTTAAAGCTGTTTACCGGAAATACTCAAAACCTCAATATGGTGCTGTTGCTGGTCGCACTCCTGCCAGAAGTTTCCATTCATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04114 ko04115 ko04218 ko04914 ko05166 map04068 map04110 map04114 map04115 map04218 map04914 map05166
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

424

Amino Acids

47.81

Weight (kDa)

9.35

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 171 - 295 1.4e-46 Cyclin, N-terminal domain
Cyclin_C PF02984 297 - 411 4.7e-40 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 479
Acc36I ACCTGC 2 cut(s) 104, 479
AccI GTMKAC 2 cut(s) 249, 609
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 4 cut(s) 140, 707, 1115, 1137
AfaI GTAC 5 cut(s) 351, 500, 515, 1013, 1060
AfiI CCNNNNNNNGG 4 cut(s) 177, 285, 353, 1220
AgeI ACCGGT 1 cut(s) 784
AgsI TTSAA 2 cut(s) 387, 696
AjnI CCWGG 1 cut(s) 252
AjuI GAANNNNNNNTTGG 2 cut(s) 842, 874
AluBI AGCT 9 cut(s) 86, 260, 328, 398, 467, 727, 974, 1031, 1190
AluI AGCT 9 cut(s) 86, 260, 328, 398, 467, 727, 974, 1031, 1190
Alw21I GWGCWC 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 1143
ApeKI GCWGC 7 cut(s) 257, 464, 1031, 1034, 1037, 1049, 1169
ApoI RAATTY 1 cut(s) 635
AseI ATTAAT 1 cut(s) 162
AsiGI ACCGGT 1 cut(s) 784
Asp700I GAANNNNTTC 1 cut(s) 1076
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 3 cut(s) 133, 658, 760
AsuII TTCGAA 1 cut(s) 587
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 781
BbsI GAAGAC 1 cut(s) 1079
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 7 cut(s) 269, 476, 1018, 1021, 1036, 1049, 1156
BccI CCATC 3 cut(s) 35, 697, 1027
BceAI ACGGC 1 cut(s) 1025
BciT130I CCWGG 1 cut(s) 254
BfaI CTAG 4 cut(s) 485, 728, 912, 971
BfmI CTRYAG 1 cut(s) 1035
BfuAI ACCTGC 2 cut(s) 104, 479
BglII AGATCT 1 cut(s) 577
BisI GCNGC 7 cut(s) 258, 465, 1032, 1035, 1038, 1050, 1170
BlsI GCNGC 7 cut(s) 259, 466, 1033, 1036, 1039, 1051, 1171
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 356
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 3 cut(s) 74, 780, 985
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 3 cut(s) 744, 764, 935
BoxI GACNNNNGTC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 1079
Bpu14I TTCGAA 1 cut(s) 587
BsaJI CCNNGG 5 cut(s) 52, 359, 987, 1140, 1146
BsaWI WCCGGW 2 cut(s) 784, 1197
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 285, 353, 1220
Bse118I RCCGGY 1 cut(s) 784
Bse1I ACTGG 3 cut(s) 347, 617, 1111
Bse3DI GCAATG 2 cut(s) 849, 930
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 5 cut(s) 52, 359, 987, 1140, 1146
BseGI GGATG 5 cut(s) 46, 373, 708, 926, 1019
BseLI CCNNNNNNNGG 4 cut(s) 177, 285, 353, 1220
BseMI GCAATG 2 cut(s) 849, 930
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 3 cut(s) 347, 617, 1111
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 7 cut(s) 269, 476, 1018, 1021, 1036, 1049, 1156
BshFI GGCC 1 cut(s) 1145
BshTI ACCGGT 1 cut(s) 784
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 2 cut(s) 785, 1198
BslI CCNNNNNNNGG 4 cut(s) 177, 285, 353, 1220
BsnI GGCC 1 cut(s) 1145
BsoBI CYCGRG 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 2 cut(s) 240, 781
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 4 cut(s) 577, 640, 855, 1180
Bsp19I CCATGG 1 cut(s) 52
BspANI GGCC 1 cut(s) 1145
BspCNI CTCAG 1 cut(s) 289
BspHI TCATGA 1 cut(s) 1268
BspLI GGNNCC 3 cut(s) 74, 780, 985
BspMAI CTGCAG 1 cut(s) 1039
BspMI ACCTGC 2 cut(s) 104, 479
BspT104I TTCGAA 1 cut(s) 587
BsrDI GCAATG 2 cut(s) 849, 930
BsrFI RCCGGY 1 cut(s) 784
BsrGI TGTACA 1 cut(s) 513
BsrI ACTGG 3 cut(s) 347, 617, 1111
BssAI RCCGGY 1 cut(s) 784
BssECI CCNNGG 5 cut(s) 52, 359, 987, 1140, 1146
BssMI GATC 4 cut(s) 577, 640, 855, 1180
BssT1I CCWWGG 5 cut(s) 52, 359, 987, 1140, 1146
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 5 cut(s) 198, 670, 886, 1011, 1125
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 932
BstAUI TGTACA 1 cut(s) 513
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 89, 297
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 5 cut(s) 46, 373, 708, 926, 1019
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 4 cut(s) 580, 643, 858, 1183
BstMBI GATC 4 cut(s) 577, 640, 855, 1180
BstMWI GCNNNNNNNGC 4 cut(s) 932, 1037, 1046, 1161
BstNI CCWGG 1 cut(s) 254
BstPAI GACNNNNGTC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 1035
BstV1I GCAGC 7 cut(s) 269, 476, 1018, 1021, 1036, 1049, 1156
BstV2I GAAGAC 1 cut(s) 1079
BstX2I RGATCY 1 cut(s) 577
BstXI CCANNNNNNTGG 1 cut(s) 1147
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 1 cut(s) 1145
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 5 cut(s) 46, 373, 708, 926, 1019
BtsI GCAGTG 1 cut(s) 1159
BtsIMutI CAGTG 2 cut(s) 1104, 1159
BveI ACCTGC 2 cut(s) 104, 479
Cac8I GCNNGC 1 cut(s) 344
CciI TCATGA 1 cut(s) 1268
CfoI GCGC 1 cut(s) 278
Cfr10I RCCGGY 1 cut(s) 784
Cfr13I GGNCC 1 cut(s) 356
CseI GACGC 1 cut(s) 470
Csp6I GTAC 5 cut(s) 350, 499, 514, 1012, 1059
CspAI ACCGGT 1 cut(s) 784
CviAII CATG 5 cut(s) 53, 188, 562, 1024, 1269
CviQI GTAC 5 cut(s) 350, 499, 514, 1012, 1059
DdeI CTNAG 2 cut(s) 89, 297
DpnI GATC 4 cut(s) 579, 642, 857, 1182
DpnII GATC 4 cut(s) 577, 640, 855, 1180
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 5 cut(s) 52, 359, 987, 1140, 1146
Eco147I AGGCCT 1 cut(s) 1145
Eco24I GRGCYC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 356
Eco57I CTGAAG 4 cut(s) 140, 707, 1115, 1137
Eco88I CYCGRG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 5 cut(s) 52, 359, 987, 1140, 1146
EcoT38I GRGCYC 1 cut(s) 781
ErhI CCWWGG 5 cut(s) 52, 359, 987, 1140, 1146
FaeI CATG 5 cut(s) 56, 191, 565, 1027, 1272
FatI CATG 5 cut(s) 52, 187, 561, 1023, 1268
FauNDI CATATG 1 cut(s) 957
FblI GTMKAC 2 cut(s) 249, 609
Fnu4HI GCNGC 7 cut(s) 258, 465, 1032, 1035, 1038, 1050, 1170
FokI GGATG 5 cut(s) 53, 380, 715, 913, 1006
FriOI GRGCYC 1 cut(s) 781
Fsp4HI GCNGC 7 cut(s) 258, 465, 1032, 1035, 1038, 1050, 1170
FspBI CTAG 4 cut(s) 485, 728, 912, 971
GlaI GCGC 1 cut(s) 277
GluI GCNGC 7 cut(s) 258, 465, 1032, 1035, 1038, 1050, 1170
HaeIII GGCC 1 cut(s) 1145
HapII CCGG 2 cut(s) 785, 1198
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 278
Hin1II CATG 5 cut(s) 56, 191, 565, 1027, 1272
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 124, 423, 687, 835
HpaII CCGG 2 cut(s) 785, 1198
HphI GGTGA 3 cut(s) 133, 658, 760
Hpy166II GTNNAC 4 cut(s) 250, 610, 628, 1195
Hpy188I TCNGA 5 cut(s) 159, 811, 834, 1095, 1117
Hpy188III TCNNGA 3 cut(s) 791, 1081, 1269
Hpy8I GTNNAC 4 cut(s) 250, 610, 628, 1195
HpyAV CCTTC 5 cut(s) 63, 295, 313, 358, 709
HpyCH4III ACNGT 5 cut(s) 198, 670, 886, 1011, 1125
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 4 cut(s) 842, 935, 1037, 1164
HpyF10VI GCNNNNNNNGC 4 cut(s) 932, 1037, 1046, 1161
HpyF3I CTNAG 2 cut(s) 89, 297
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 5 cut(s) 56, 191, 565, 1027, 1272
HspAI GCGC 1 cut(s) 276
Kzo9I GATC 4 cut(s) 577, 640, 855, 1180
LmnI GCTCC 2 cut(s) 784, 983
Lsp1109I GCAGC 7 cut(s) 269, 476, 1018, 1021, 1036, 1049, 1156
LweI GCATC 3 cut(s) 744, 764, 935
MaeI CTAG 4 cut(s) 485, 728, 912, 971
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 2 cut(s) 121, 292
MalI GATC 4 cut(s) 579, 642, 857, 1182
MboI GATC 4 cut(s) 577, 640, 855, 1180
MboII GAAGA 5 cut(s) 146, 601, 1084, 1130, 1257
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 2 cut(s) 240, 781
MluCI AATT 3 cut(s) 509, 583, 635
MlyI GAGTC 2 cut(s) 118, 432
MmeI TCCRAC 1 cut(s) 532
MroXI GAANNNNTTC 1 cut(s) 1076
MseI TTAA 3 cut(s) 162, 582, 1185
MslI CAYNNNNRTG 1 cut(s) 1267
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 2 cut(s) 785, 1198
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 4 cut(s) 932, 1037, 1046, 1161
NcoI CCATGG 1 cut(s) 52
NdeI CATATG 1 cut(s) 957
NdeII GATC 4 cut(s) 577, 640, 855, 1180
NlaIII CATG 5 cut(s) 56, 191, 565, 1027, 1272
NlaIV GGNNCC 3 cut(s) 74, 780, 985
NmuCI GTSAC 1 cut(s) 121
NspV TTCGAA 1 cut(s) 587
PagI TCATGA 1 cut(s) 1268
PaqCI CACCTGC 1 cut(s) 479
PceI AGGCCT 1 cut(s) 1145
PdmI GAANNNNTTC 1 cut(s) 1076
PfeI GAWTC 2 cut(s) 687, 835
PinAI ACCGGT 1 cut(s) 784
PkrI GCNGC 7 cut(s) 259, 466, 1033, 1036, 1039, 1051, 1171
PleI GAGTC 2 cut(s) 118, 431
PpsI GAGTC 2 cut(s) 118, 431
PshAI GACNNNNGTC 1 cut(s) 128
PshBI ATTAAT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 74, 780, 985
PspPI GGNCC 1 cut(s) 356
PstI CTGCAG 1 cut(s) 1039
PsuI RGATCY 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 5 cut(s) 351, 500, 515, 1013, 1060
RsaNI GTAC 5 cut(s) 350, 499, 514, 1012, 1059
RseI CAYNNNNRTG 1 cut(s) 1267
SaqAI TTAA 3 cut(s) 162, 582, 1185
SatI GCNGC 7 cut(s) 258, 465, 1032, 1035, 1038, 1050, 1170
Sau3AI GATC 4 cut(s) 577, 640, 855, 1180
Sau96I GGNCC 1 cut(s) 356
SchI GAGTC 2 cut(s) 118, 432
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 2 cut(s) 240, 781
SfaNI GCATC 3 cut(s) 744, 764, 935
SfcI CTRYAG 1 cut(s) 1035
SfuI TTCGAA 1 cut(s) 587
SinI GGWCC 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 1267
Sse9I AATT 3 cut(s) 509, 583, 635
SseBI AGGCCT 1 cut(s) 1145
SspMI CTAG 4 cut(s) 485, 728, 912, 971
StuI AGGCCT 1 cut(s) 1145
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 5 cut(s) 52, 359, 987, 1140, 1146
TaaI ACNGT 5 cut(s) 198, 670, 886, 1011, 1125
TaiI ACGT 1 cut(s) 504
TaqI TCGA 4 cut(s) 132, 400, 587, 758
TaqII GACCGA 1 cut(s) 699
TasI AATT 3 cut(s) 509, 583, 635
TatI WGTACW 2 cut(s) 349, 513
TfiI GAWTC 2 cut(s) 687, 835
Tru1I TTAA 3 cut(s) 162, 582, 1185
Tru9I TTAA 3 cut(s) 162, 582, 1185
TscAI CASTG 2 cut(s) 1111, 1166
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 7 cut(s) 257, 464, 1031, 1034, 1037, 1049, 1169
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 5 cut(s) 176, 495, 522, 1251, 1257
TspRI CASTG 2 cut(s) 1111, 1166
VpaK11BI GGWCC 1 cut(s) 356
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 1 cut(s) 635
XmiI GTMKAC 2 cut(s) 249, 609
XmnI GAANNNNTTC 1 cut(s) 1076
XspI CTAG 4 cut(s) 485, 728, 912, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.