Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001255

Physical Location & Seq

Genomic Coordinates Forward (+)

1805196 .. 1808119

Gene Structure 2924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1022700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAGGAAGTCAGAGCAGCGGTTGTTCCACAGCAACCCAAAGGTGGTGATGAACTCAGAAGGAACAGGCGAGTTCTTCAGGACATTGGCAATCGCCCCATCACTAGGAGTTTTCATGCACAACTGATAGCAAAGGCACAAGAAAAAGGAGTTAACAATGCGAACCCTGTGGTCCTGCCCGTGCTTGATGATAAGGTAGCTCTCAATCGAAAGCGTTTTCCGGTGAAGAAGGTAGTCCCAAGGAAGGAAATTGAAAAGCCAAAAACTGAGGCCGTGGTTGTTATCAGTTCTGATGAAGAAGAAGAAAAGAAGGAACCTGTTAATCGATGCAAGCCAGAAGAAGTGAGGAAGGAAGTCAAGACTCTGACTTCGATCCTCACAGCTCGAAGCAAGGCTATGGCTATTGGAGTGAACTCCAAGCCGAAAGAAAAGATTGTTGAAATCGATTCAGCTGATGTCAACGATGAATTAGCAGTGGTTGAATACATTGATGACTTGTACAAGTTCTACAAGCTCACCGAAGATGATAGCCGAGTTCATGATTACATGGAGTCACAGCCAGACATAAACTCGAAGATGAGATCAATCCTCGTAGACTGGTTGGTAGAGGTTCACAAGAAATTCGAGCTGATGCCTGAAACCTTCTACCTGACTGTGAACATACTTGATCGGTACCTTTCGATGAAGATCGTTTCTAGGAGGGAACTTCAGCTAGTTGGCATTAGTTCTATGGTCATAGCATCCAAATATGAGGAAATCTGGGCTCCACAGGTCAATGACTTTGTTTGCTTGTCAGACTATGCATACACTGCCAATCAGATACTGCGCATGGAGAAAGCAATTCTGGGGAAGCTGGAGTGGTATCTGACTGTTCCCACCCCTTATGTCTTCCTGTCTCGATACATCAAAGCTTCTGTTTCGCCTGATGTGGAGATCAAGAACATGGTTTTCTTTCTCGCTGAGCTTGGAATCCTGCATTATCCGACCATCATTCTGTACTCCCCATCCCTGATTGCTGCTGCAGCCGTCTACACTGCTCGTTTTACTCTGGGTAAAGTTCCTGTCTGGACTGAAACTCTGAAGCACCACACTGGCTACAACACAGAACAGTTAAGGGACTGTGCCAAGCTCTTGGTTGGCCTTCACTCGAATGCTGCAGGAAGTAAATTCCAAGCTGTTTTCCGCAAATTCTCAATGCCGGAGTATGGTGCTGTAGCTCTTTTCGTTCCAGCCAAAAGTTTTCATTCATCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

419

Amino Acids

47.57

Weight (kDa)

8.76

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	165 - 290	6.1e-49	Cyclin, N-terminal domain
Cyclin_C	PF02984	292 - 410	1e-36	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27185 AT5G01800
fragaria_vesca	FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43460 FvH4_3g43460 FvH4_3g43460
malus_domestica	MD03G1022700.v1.1 MD03G1022800.v1.1 MD11G1027000.v1.1
prunus_persica	Prupe.6G021200_v2.0.a1 Prupe.6G021300_v2.0.a1
pyrus_communis	pycom03g01920 pycom11g02060
rosa_chinensis	RchiOBHm_Chr5g0077531 RchiOBHm_Chr5g0077551 RchiOBHm_Chr5g0077871 RchiOBHm_Chr7g0239321
rosa_laevigata	RLG00000000763 RLG00000006532 RLG00000013630 RLG00000017586 RLG00000022210 RLG00000028417 RLG00000036703 RLG00000036721
rosa_multiflora	Rmu_sc0001018.1_g000034 Rmu_sc0003058.1_g000003 Rmu_sc0004277.1_g000046 Rmu_sc0008456.1_g000002 Rmu_sc0031428.1_g000001 Rmu_ssc0000186.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004310 Rroxscaffold_1G00004440 Rroxscaffold_1G00004450 Rroxscaffold_3G00221010
rosa_rugosa	Rorug05G0455500 Rorug05G0455600 Rorug05G0456800.1 Rorug07G0327300 Rorug07G0327400
rosa_samantha	Rh5AG510200 Rh5AG511200 Rh5BG531900 Rh5BG533900 Rh5DG543900 Rh5DG544000 Rh5DG545300 Rh7AG480700
rosa_wichuraiana	Rw5G047290 Rw5G047440 Rw7G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	827
Acc65I	GGTACC	1 cut(s)	672
AccB1I	GGYRCC	1 cut(s)	672
AccI	GTMKAC	2 cut(s)	594, 1029
AciI	CCGC	2 cut(s)	20, 1183
AclWI	GGATC	1 cut(s)	367
AcsI	RAATTY	3 cut(s)	620, 1166, 1187
AcuI	CTGAAG	3 cut(s)	62, 692, 1100
AfaI	GTAC	3 cut(s)	500, 674, 998
AfiI	CCNNNNNNNGG	4 cut(s)	44, 105, 244, 1205
AgsI	TTSAA	3 cut(s)	254, 440, 482
Alw26I	GTCTC	1 cut(s)	900
AlwI	GGATC	1 cut(s)	367
AlwNI	CAGNNNCTG	1 cut(s)	823
AoxI	GGCC	2 cut(s)	270, 1138
ApeKI	GCWGC	5 cut(s)	17, 1016, 1019, 1022, 1154
ApoI	RAATTY	3 cut(s)	620, 1166, 1187
ArsI	GACNNNNNNTTYG	2 cut(s)	352, 384
Asp718I	GGTACC	1 cut(s)	672
AspLEI	GCGC	1 cut(s)	828
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	59, 235, 508
AvaII	GGWCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	766
BbsI	GAAGAC	1 cut(s)	880
BbvI	GCAGC	5 cut(s)	29, 1003, 1006, 1034, 1141
BccI	CCATC	3 cut(s)	107, 995, 1012
BceAI	ACGGC	2 cut(s)	257, 1010
BcoDI	GTCTC	1 cut(s)	900
BfaI	CTAG	3 cut(s)	105, 696, 713
BfmI	CTRYAG	3 cut(s)	1020, 1155, 1212
BisI	GCNGC	5 cut(s)	18, 1017, 1020, 1023, 1155
BlpI	GCTNAGC	1 cut(s)	960
BlsI	GCNGC	5 cut(s)	19, 1018, 1021, 1024, 1156
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	3 cut(s)	315, 674, 765
BmsI	GCATC	3 cut(s)	317, 621, 749
BpiI	GAAGAC	1 cut(s)	880
BpmI	CTGGAG	1 cut(s)	875
Bpu1102I	GCTNAGC	1 cut(s)	960
Bsa29I	ATCGAT	2 cut(s)	325, 444
BsaBI	GATNNNNATC	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	239, 273
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 105, 244, 1205
Bse1I	ACTGG	2 cut(s)	602, 1096
Bse8I	GATNNNNATC	1 cut(s)	686
BseCI	ATCGAT	2 cut(s)	325, 444
BseDI	CCNNGG	2 cut(s)	239, 273
BseGI	GGATG	2 cut(s)	740, 1004
BseJI	GATNNNNATC	1 cut(s)	686
BseLI	CCNNNNNNNGG	4 cut(s)	44, 105, 244, 1205
BseMII	CTCAG	3 cut(s)	70, 258, 951
BseNI	ACTGG	2 cut(s)	602, 1096
BseXI	GCAGC	5 cut(s)	29, 1003, 1006, 1034, 1141
BshFI	GGCC	2 cut(s)	272, 1140
BshNI	GGYRCC	1 cut(s)	672
BshVI	ATCGAT	2 cut(s)	325, 444
BsiSI	CCGG	2 cut(s)	221, 1199
BslFI	GGGAC	2 cut(s)	221, 1130
BslI	CCNNNNNNNGG	4 cut(s)	44, 105, 244, 1205
BsmAI	GTCTC	1 cut(s)	900
BsmFI	GGGAC	2 cut(s)	221, 1130
BsmI	GAATGC	1 cut(s)	1156
BsnI	GGCC	2 cut(s)	272, 1140
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	372, 581, 667, 687, 933
Bsp1720I	GCTNAGC	1 cut(s)	960
BspACI	CCGC	2 cut(s)	20, 1183
BspANI	GGCC	2 cut(s)	272, 1140
BspCNI	CTCAG	3 cut(s)	69, 259, 952
BspDI	ATCGAT	2 cut(s)	325, 444
BspHI	TCATGA	2 cut(s)	538, 1253
BspLI	GGNNCC	3 cut(s)	315, 674, 765
BspMAI	CTGCAG	2 cut(s)	1024, 1159
BspPI	GGATC	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	672
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	602, 1096
BssECI	CCNNGG	2 cut(s)	239, 273
BssMI	GATC	5 cut(s)	372, 581, 667, 687, 933
BssT1I	CCWWGG	1 cut(s)	239
Bst4CI	ACNGT	4 cut(s)	655, 871, 1110, 1121
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstAUI	TGTACA	1 cut(s)	498
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	56, 267, 960
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	740, 1004
BstHHI	GCGC	1 cut(s)	828
BstKTI	GATC	5 cut(s)	375, 584, 670, 690, 936
BstMAI	GTCTC	1 cut(s)	900
BstMBI	GATC	5 cut(s)	372, 581, 667, 687, 933
BstMWI	GCNNNNNNNGC	2 cut(s)	809, 1022
BstSFI	CTRYAG	3 cut(s)	1020, 1155, 1212
BstV1I	GCAGC	5 cut(s)	29, 1003, 1006, 1034, 1141
BstV2I	GAAGAC	1 cut(s)	880
BstXI	CCANNNNNNTGG	1 cut(s)	1132
Bsu15I	ATCGAT	2 cut(s)	325, 444
BsuRI	GGCC	2 cut(s)	272, 1140
BsuTUI	ATCGAT	2 cut(s)	325, 444
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	740, 1004
BtsI	GCAGTG	3 cut(s)	480, 807, 1032
BtsIMutI	CAGTG	4 cut(s)	480, 807, 1032, 1089
Cac8I	GCNNGC	1 cut(s)	332
CaiI	CAGNNNCTG	1 cut(s)	823
CciI	TCATGA	2 cut(s)	538, 1253
CfoI	GCGC	1 cut(s)	828
Cfr13I	GGNCC	1 cut(s)	172
ClaI	ATCGAT	2 cut(s)	325, 444
Csp6I	GTAC	3 cut(s)	499, 673, 997
CviAII	CATG	6 cut(s)	116, 539, 547, 829, 943, 1254
CviQI	GTAC	3 cut(s)	499, 673, 997
DdeI	CTNAG	3 cut(s)	56, 267, 960
DpnI	GATC	5 cut(s)	374, 583, 669, 689, 935
DpnII	GATC	5 cut(s)	372, 581, 667, 687, 933
Eco130I	CCWWGG	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	766
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	3 cut(s)	62, 692, 1100
EcoT14I	CCWWGG	1 cut(s)	239
EcoT22I	ATGCAT	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	766
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	6 cut(s)	119, 542, 550, 832, 946, 1257
FaqI	GGGAC	2 cut(s)	221, 1130
FatI	CATG	6 cut(s)	115, 538, 546, 828, 942, 1253
FblI	GTMKAC	2 cut(s)	594, 1029
Fnu4HI	GCNGC	5 cut(s)	18, 1017, 1020, 1023, 1155
FokI	GGATG	2 cut(s)	727, 991
FriOI	GRGCYC	1 cut(s)	766
Fsp4HI	GCNGC	5 cut(s)	18, 1017, 1020, 1023, 1155
FspBI	CTAG	3 cut(s)	105, 696, 713
FspI	TGCGCA	1 cut(s)	827
GlaI	GCGC	1 cut(s)	827
GluI	GCNGC	5 cut(s)	18, 1017, 1020, 1023, 1155
GsuI	CTGGAG	1 cut(s)	875
HaeIII	GGCC	2 cut(s)	272, 1140
HapII	CCGG	2 cut(s)	221, 1199
HhaI	GCGC	1 cut(s)	828
Hin1II	CATG	6 cut(s)	119, 542, 550, 832, 946, 1257
Hin6I	GCGC	1 cut(s)	826
HinP1I	GCGC	1 cut(s)	826
HincII	GTYRAC	2 cut(s)	154, 460
HindII	GTYRAC	2 cut(s)	154, 460
HindIII	AAGCTT	1 cut(s)	909
HinfI	GANTC	4 cut(s)	361, 446, 551, 969
HpaI	GTTAAC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	221, 1199
HphI	GGTGA	3 cut(s)	59, 235, 508
Hpy166II	GTNNAC	7 cut(s)	154, 412, 460, 595, 613, 658, 1030
Hpy188I	TCNGA	9 cut(s)	14, 59, 292, 366, 796, 819, 867, 984, 1080
Hpy188III	TCNNGA	7 cut(s)	80, 358, 539, 897, 937, 1066, 1254
Hpy8I	GTNNAC	7 cut(s)	154, 412, 460, 595, 613, 658, 1030
HpyAV	CCTTC	7 cut(s)	54, 223, 238, 304, 343, 652, 1151
HpyCH4III	ACNGT	4 cut(s)	655, 871, 1110, 1121
HpyCH4V	TGCA	6 cut(s)	119, 330, 803, 976, 1022, 1157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	809, 1022
HpyF3I	CTNAG	3 cut(s)	56, 267, 960
Hsp92II	CATG	6 cut(s)	119, 542, 550, 832, 946, 1257
HspAI	GCGC	1 cut(s)	826
KpnI	GGTACC	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	372, 581, 667, 687, 933
LmnI	GCTCC	1 cut(s)	769
Lsp1109I	GCAGC	5 cut(s)	29, 1003, 1006, 1034, 1141
LweI	GCATC	3 cut(s)	317, 621, 749
MaeI	CTAG	3 cut(s)	105, 696, 713
MaeIII	GTNAC	1 cut(s)	552
MalI	GATC	5 cut(s)	374, 583, 669, 689, 935
MboI	GATC	5 cut(s)	372, 581, 667, 687, 933
MhlI	GDGCHC	1 cut(s)	766
MluCI	AATT	6 cut(s)	249, 467, 620, 840, 1166, 1187
MlyI	GAGTC	2 cut(s)	355, 560
MmeI	TCCRAC	1 cut(s)	1007
MnlI	CCTC	7 cut(s)	262, 339, 386, 599, 601, 693, 745
Mph1103I	ATGCAT	1 cut(s)	805
MseI	TTAA	3 cut(s)	153, 321, 1112
MslI	CAYNNNNRTG	2 cut(s)	1149, 1252
MspA1I	CMGCKG	2 cut(s)	20, 452
MspI	CCGG	2 cut(s)	221, 1199
Mva1269I	GAATGC	1 cut(s)	1156
MwoI	GCNNNNNNNGC	2 cut(s)	809, 1022
NdeII	GATC	5 cut(s)	372, 581, 667, 687, 933
NlaIII	CATG	6 cut(s)	119, 542, 550, 832, 946, 1257
NlaIV	GGNNCC	3 cut(s)	315, 674, 765
NmeAIII	GCCGAG	1 cut(s)	557
NmuCI	GTSAC	1 cut(s)	552
NsbI	TGCGCA	1 cut(s)	827
NsiI	ATGCAT	1 cut(s)	805
PagI	TCATGA	2 cut(s)	538, 1253
PctI	GAATGC	1 cut(s)	1156
PfeI	GAWTC	2 cut(s)	446, 969
PkrI	GCNGC	5 cut(s)	19, 1018, 1021, 1024, 1156
PleI	GAGTC	2 cut(s)	355, 559
PpsI	GAGTC	2 cut(s)	355, 559
PspN4I	GGNNCC	3 cut(s)	315, 674, 765
PspPI	GGNCC	1 cut(s)	172
PstI	CTGCAG	2 cut(s)	1024, 1159
PstNI	CAGNNNCTG	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	3 cut(s)	500, 674, 998
RsaNI	GTAC	3 cut(s)	499, 673, 997
RseI	CAYNNNNRTG	2 cut(s)	1149, 1252
SaqAI	TTAA	3 cut(s)	153, 321, 1112
SatI	GCNGC	5 cut(s)	18, 1017, 1020, 1023, 1155
Sau3AI	GATC	5 cut(s)	372, 581, 667, 687, 933
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	2 cut(s)	355, 560
SduI	GDGCHC	1 cut(s)	766
SfaNI	GCATC	3 cut(s)	317, 621, 749
SfcI	CTRYAG	3 cut(s)	1020, 1155, 1212
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	2 cut(s)	1149, 1252
Sse9I	AATT	6 cut(s)	249, 467, 620, 840, 1166, 1187
SsiI	CCGC	2 cut(s)	20, 1183
SspMI	CTAG	3 cut(s)	105, 696, 713
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	4 cut(s)	655, 871, 1110, 1121
TasI	AATT	6 cut(s)	249, 467, 620, 840, 1166, 1187
TatI	WGTACW	2 cut(s)	498, 996
TfiI	GAWTC	2 cut(s)	446, 969
Tru1I	TTAA	3 cut(s)	153, 321, 1112
Tru9I	TTAA	3 cut(s)	153, 321, 1112
TscAI	CASTG	4 cut(s)	480, 814, 1039, 1096
TseFI	GTSAC	1 cut(s)	552
TseI	GCWGC	5 cut(s)	17, 1016, 1019, 1022, 1154
Tsp45I	GTSAC	1 cut(s)	552
TspDTI	ATGAA	8 cut(s)	66, 104, 309, 480, 527, 698, 1232, 1236
TspRI	CASTG	4 cut(s)	480, 814, 1039, 1096
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	3 cut(s)	620, 1166, 1187
XmiI	GTMKAC	2 cut(s)	594, 1029
XspI	CTAG	3 cut(s)	105, 696, 713
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.