Prupe.6G021200_v2.0.a1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001255
Physical Location & Seq
Forward (+)
1719783 .. 1722829
3047 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G021200.1

Sequence Viewer

Length: 1332 bp
ATGGAGCACGCTAGAGCAGCAGTTCTTCCACAACAACCCAGAGGAAATGACAAAGTCAAGAATGAAGCACAGAGAAGGAACCGGCGTGTTCTTGGAGACATTGGTAATAATCTTGAGGCTGGTCGTATTGTTGAAGGGAAGCCCCCTGTTCAGATTTCTCGCCCCATAACTAGAAGTTTTCATGCACAACTGTTAGCAAAGGCACAACAAGCACAAGCAGAAAAGAATCATGTGAACCCTGTGCTGCCGGTTGTTGAAGATAAAAAACGAGGTCCTGCCAAGAAGGCGGCAGTGGTAGTAGCGCCCAAGAAGGCAATTGAAAAGCCAAAATCTGAGACTGTGGTTGTTATAAGTTCTGATGAAAGAGTAAAGGATAAACCAGTGAACCAATGCAAGCCAGTAGACGGGCCTTCAAGGAAGGAAGTCAAGACTCTGACTTCGATCCTCACAGCTCGAAGCAAGGCTATGGCTGGTGGAGTTAACATCAAGCCAAAGGAAAAGATTGTTGATTTTGATTCAGCTGATGTTAATGATGAATTGGCTGTGGTGGAATACATTGATGACTTGTACCAGTTCTACAAGCTCACTGAAGATGACAGCAGAGTTAATGATTACATGGAGTCACAGCCAGACATAAACCCAAAGATGAGATCAATCCTCATAGACTGGTTGGTAGAAGTTCACAGGAAATTTGAACTGATGCCTGAAACCTTCTACCTGACTGTGAACATAATTGATCGATACTTGTCAAAGAAGATCGTTTCTAGGAGGGAACTTCAGCTAGTTGGTATTAGTTCTATGGTTATAGCATCCAAATATGAGGAAATCTGGGCCCCACAGGTCAATGACTTTGTTTGCTTATCAGACTATGCATACACTGGTGATCAGATACTTCTGATGGAGAAAGCAATTCTGGGGAAGTTGGAATGGTACCTGACAGTTCCTACCCCATATGTCTTCCTGTCTAGATACATCAAAGCCTCTGTTTCACCTGGTGAAGAGGTGAAGAATATGGTTTTCTTTCTAGCTGAGCTCGGAATTATGCATTATCCAACTACTACTCGGTACTCTCCATCCCTGATAGCTGCTGCAGCTGTCTATGCTGCACGTTGCACCCTCAACAAAGCTCCTTTCTGGACTGAAACTCTGAAGCACCACACTGGCTTCTCTGAAGAACAGTTAAGGGATTGCGCCAAACTCCTGGTGGGCTTTCACTTGAAAGCTGCAGAAAGCAACCTTCAAGCAGTTTATCGGAAATTCTCGAAGCCTGAACATGGTGCCGTTGCTCTTTTCACTCCGGCCAAGAGTTTTCAGTCCTCATCTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

444

Amino Acids

49.81

Weight (kDa)

9.14

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
Acc65I GGTACC 1 cut(s) 930
AccB1I GGYRCC 2 cut(s) 930, 1277
AccI GTMKAC 1 cut(s) 402
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 436
AcoI YGGCCR 1 cut(s) 1299
AcsI RAATTY 2 cut(s) 689, 1256
AcuI CTGAAG 4 cut(s) 609, 761, 1169, 1191
AdeI CACNNNGTG 1 cut(s) 995
AfaI GTAC 3 cut(s) 569, 932, 1067
AfiI CCNNNNNNNGG 2 cut(s) 404, 1274
AgsI TTSAA 7 cut(s) 134, 257, 320, 414, 695, 1219, 1241
AjnI CCWGG 2 cut(s) 991, 1200
Alw21I GWGCWC 2 cut(s) 9, 1035
Alw26I GTCTC 2 cut(s) 90, 329
AlwI GGATC 1 cut(s) 436
AoxI GGCC 3 cut(s) 407, 831, 1299
ApaI GGGCCC 1 cut(s) 835
ApeKI GCWGC 7 cut(s) 17, 244, 1085, 1088, 1091, 1103, 1223
ApoI RAATTY 2 cut(s) 689, 1256
ArsI GACNNNNNNTTYG 2 cut(s) 421, 453
Asp718I GGTACC 1 cut(s) 930
AspLEI GCGC 2 cut(s) 304, 1193
AspS9I GGNCC 4 cut(s) 272, 407, 831, 832
AsuHPI GGTGA 4 cut(s) 893, 981, 1007, 1015
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 835
BanI GGYRCC 2 cut(s) 930, 1277
BanII GRGCYC 2 cut(s) 835, 1035
BbsI GAAGAC 1 cut(s) 949
Bbv12I GWGCWC 2 cut(s) 9, 1035
BbvI GCAGC 7 cut(s) 29, 231, 1072, 1075, 1090, 1103, 1210
BccI CCATC 2 cut(s) 892, 1081
BceAI ACGGC 1 cut(s) 1265
BciT130I CCWGG 2 cut(s) 993, 1202
BclI TGATCA 1 cut(s) 883
BcoDI GTCTC 2 cut(s) 90, 329
BfaI CTAG 6 cut(s) 12, 171, 765, 782, 966, 1025
BfmI CTRYAG 2 cut(s) 1089, 1224
BfoI RGCGCY 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 8 cut(s) 18, 245, 288, 1086, 1089, 1092, 1104, 1224
BlpI GCTNAGC 1 cut(s) 1029
BlsI GCNGC 8 cut(s) 19, 246, 289, 1087, 1090, 1093, 1105, 1225
Bme1390I CCNGG 2 cut(s) 993, 1202
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 4 cut(s) 272, 407, 831, 832
BmiI GGNNCC 5 cut(s) 80, 833, 834, 932, 1279
BmrFI CCNGG 2 cut(s) 993, 1202
BmsI GCATC 2 cut(s) 690, 818
BpiI GAAGAC 1 cut(s) 949
Bpu1102I GCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 739
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 1274
Bse118I RCCGGY 2 cut(s) 81, 247
Bse1I ACTGG 6 cut(s) 380, 398, 571, 671, 883, 1165
BseBI CCWGG 2 cut(s) 993, 1202
BseCI ATCGAT 1 cut(s) 739
BseGI GGATG 2 cut(s) 809, 1073
BseLI CCNNNNNNNGG 2 cut(s) 404, 1274
BseMII CTCAG 2 cut(s) 324, 1020
BseNI ACTGG 6 cut(s) 380, 398, 571, 671, 883, 1165
BseSI GKGCMC 1 cut(s) 835
BseXI GCAGC 7 cut(s) 29, 231, 1072, 1075, 1090, 1103, 1210
BsgI GTGCAG 1 cut(s) 1089
BshFI GGCC 3 cut(s) 409, 833, 1301
BshNI GGYRCC 2 cut(s) 930, 1277
BshVI ATCGAT 1 cut(s) 739
BsiHKAI GWGCWC 2 cut(s) 9, 1035
BsiSI CCGG 3 cut(s) 82, 248, 1298
BslI CCNNNNNNNGG 2 cut(s) 404, 1274
BsmAI GTCTC 2 cut(s) 90, 329
BsnI GGCC 3 cut(s) 409, 833, 1301
Bsp120I GGGCCC 1 cut(s) 831
Bsp1286I GDGCHC 3 cut(s) 9, 835, 1035
Bsp143I GATC 5 cut(s) 441, 650, 736, 756, 883
Bsp1720I GCTNAGC 1 cut(s) 1029
BspACI CCGC 1 cut(s) 287
BspANI GGCC 3 cut(s) 409, 833, 1301
BspCNI CTCAG 2 cut(s) 325, 1021
BspDI ATCGAT 1 cut(s) 739
BspLI GGNNCC 5 cut(s) 80, 833, 834, 932, 1279
BspMAI CTGCAG 2 cut(s) 1093, 1228
BspPI GGATC 1 cut(s) 436
BspT107I GGYRCC 2 cut(s) 930, 1277
BsrFI RCCGGY 2 cut(s) 81, 247
BsrI ACTGG 6 cut(s) 380, 398, 571, 671, 883, 1165
BssAI RCCGGY 2 cut(s) 81, 247
BssMI GATC 5 cut(s) 441, 650, 736, 756, 883
Bst2UI CCWGG 2 cut(s) 993, 1202
Bst4CI ACNGT 5 cut(s) 192, 340, 724, 940, 1179
Bst6I CTCTTC 1 cut(s) 993
BstC8I GCNNGC 2 cut(s) 9, 395
BstDEI CTNAG 2 cut(s) 333, 1029
BstF5I GGATG 2 cut(s) 809, 1073
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 2 cut(s) 304, 1193
BstKTI GATC 5 cut(s) 444, 653, 739, 759, 886
BstMAI GTCTC 2 cut(s) 90, 329
BstMBI GATC 5 cut(s) 441, 650, 736, 756, 883
BstMWI GCNNNNNNNGC 5 cut(s) 17, 209, 284, 1091, 1100
BstNI CCWGG 2 cut(s) 993, 1202
BstSCI CCNGG 2 cut(s) 991, 1200
BstSFI CTRYAG 2 cut(s) 1089, 1224
BstSLI GKGCMC 1 cut(s) 835
BstV1I GCAGC 7 cut(s) 29, 231, 1072, 1075, 1090, 1103, 1210
BstV2I GAAGAC 1 cut(s) 949
BstXI CCANNNNNNTGG 1 cut(s) 1201
Bsu15I ATCGAT 1 cut(s) 739
BsuRI GGCC 3 cut(s) 409, 833, 1301
BsuTUI ATCGAT 1 cut(s) 739
BtsCI GGATG 2 cut(s) 809, 1073
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 5 cut(s) 297, 387, 585, 876, 1158
Cac8I GCNNGC 2 cut(s) 9, 395
CfoI GCGC 2 cut(s) 304, 1193
Cfr10I RCCGGY 2 cut(s) 81, 247
Cfr13I GGNCC 4 cut(s) 272, 407, 831, 832
ClaI ATCGAT 1 cut(s) 739
CsiI ACCWGGT 1 cut(s) 991
Csp6I GTAC 3 cut(s) 568, 931, 1066
CviAII CATG 4 cut(s) 182, 230, 616, 1274
CviQI GTAC 3 cut(s) 568, 931, 1066
DdeI CTNAG 2 cut(s) 333, 1029
DpnI GATC 5 cut(s) 443, 652, 738, 758, 885
DpnII GATC 5 cut(s) 441, 650, 736, 756, 883
DraIII CACNNNGTG 1 cut(s) 995
EaeI YGGCCR 1 cut(s) 1299
Eam1104I CTCTTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 993
Ecl136II GAGCTC 1 cut(s) 1033
Eco24I GRGCYC 2 cut(s) 835, 1035
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 1033
Eco57I CTGAAG 4 cut(s) 609, 761, 1169, 1191
EcoICRI GAGCTC 1 cut(s) 1033
EcoO109I RGGNCCY 2 cut(s) 272, 832
EcoRII CCWGG 2 cut(s) 991, 1200
EcoT22I ATGCAT 2 cut(s) 874, 1047
EcoT38I GRGCYC 2 cut(s) 835, 1035
FaeI CATG 4 cut(s) 185, 233, 619, 1277
FatI CATG 4 cut(s) 181, 229, 615, 1273
FauNDI CATATG 1 cut(s) 952
FbaI TGATCA 1 cut(s) 883
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 8 cut(s) 18, 245, 288, 1086, 1089, 1092, 1104, 1224
FokI GGATG 2 cut(s) 796, 1060
FriOI GRGCYC 2 cut(s) 835, 1035
Fsp4HI GCNGC 8 cut(s) 18, 245, 288, 1086, 1089, 1092, 1104, 1224
FspBI CTAG 6 cut(s) 12, 171, 765, 782, 966, 1025
GlaI GCGC 2 cut(s) 303, 1192
GluI GCNGC 8 cut(s) 18, 245, 288, 1086, 1089, 1092, 1104, 1224
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 3 cut(s) 409, 833, 1301
HapII CCGG 3 cut(s) 82, 248, 1298
HhaI GCGC 2 cut(s) 304, 1193
Hin1II CATG 4 cut(s) 185, 233, 619, 1277
Hin6I GCGC 2 cut(s) 302, 1191
HinP1I GCGC 2 cut(s) 302, 1191
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 4 cut(s) 226, 430, 515, 620
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 3 cut(s) 82, 248, 1298
HphI GGTGA 4 cut(s) 893, 981, 1007, 1015
Hpy166II GTNNAC 6 cut(s) 235, 385, 403, 481, 682, 727
Hpy188III TCNNGA 7 cut(s) 58, 113, 427, 966, 1135, 1261, 1329
Hpy8I GTNNAC 6 cut(s) 235, 385, 403, 481, 682, 727
HpyAV CCTTC 8 cut(s) 69, 128, 277, 304, 412, 420, 721, 1247
HpyCH4III ACNGT 5 cut(s) 192, 340, 724, 940, 1179
HpyCH4IV ACGT 1 cut(s) 1108
HpyCH4V TGCA 8 cut(s) 185, 393, 872, 1045, 1091, 1106, 1113, 1226
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 209, 284, 1091, 1100
HpyF3I CTNAG 2 cut(s) 333, 1029
HpySE526I ACGT 1 cut(s) 1108
Hsp92II CATG 4 cut(s) 185, 233, 619, 1277
HspAI GCGC 2 cut(s) 302, 1191
KpnI GGTACC 1 cut(s) 934
Ksp22I TGATCA 1 cut(s) 883
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 5 cut(s) 441, 650, 736, 756, 883
LmnI GCTCC 2 cut(s) 4, 1132
Lsp1109I GCAGC 7 cut(s) 29, 231, 1072, 1075, 1090, 1103, 1210
LweI GCATC 2 cut(s) 690, 818
MabI ACCWGGT 1 cut(s) 991
MaeI CTAG 6 cut(s) 12, 171, 765, 782, 966, 1025
MaeII ACGT 1 cut(s) 1108
MaeIII GTNAC 1 cut(s) 621
MalI GATC 5 cut(s) 443, 652, 738, 758, 885
MboI GATC 5 cut(s) 441, 650, 736, 756, 883
MfeI CAATTG 1 cut(s) 315
MhlI GDGCHC 3 cut(s) 9, 835, 1035
MluCI AATT 7 cut(s) 315, 536, 689, 732, 909, 1038, 1256
MlyI GAGTC 2 cut(s) 424, 629
MmeI TCCRAC 2 cut(s) 903, 1076
Mph1103I ATGCAT 2 cut(s) 874, 1047
MseI TTAA 4 cut(s) 480, 528, 606, 1181
MspA1I CMGCKG 2 cut(s) 521, 1094
MspI CCGG 3 cut(s) 82, 248, 1298
MspR9I CCNGG 2 cut(s) 993, 1202
MunI CAATTG 1 cut(s) 315
MvaI CCWGG 2 cut(s) 993, 1202
MwoI GCNNNNNNNGC 5 cut(s) 17, 209, 284, 1091, 1100
NdeI CATATG 1 cut(s) 952
NdeII GATC 5 cut(s) 441, 650, 736, 756, 883
NlaIII CATG 4 cut(s) 185, 233, 619, 1277
NlaIV GGNNCC 5 cut(s) 80, 833, 834, 932, 1279
NmuCI GTSAC 1 cut(s) 621
NsiI ATGCAT 2 cut(s) 874, 1047
PfeI GAWTC 2 cut(s) 226, 515
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 8 cut(s) 19, 246, 289, 1087, 1090, 1093, 1105, 1225
PleI GAGTC 2 cut(s) 424, 628
PpsI GAGTC 2 cut(s) 424, 628
PpuMI RGGWCCY 1 cut(s) 272
PsiI TTATAA 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 1035
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 2 cut(s) 991, 1200
PspGI CCWGG 2 cut(s) 991, 1200
PspN4I GGNNCC 5 cut(s) 80, 833, 834, 932, 1279
PspOMI GGGCCC 1 cut(s) 831
PspPI GGNCC 4 cut(s) 272, 407, 831, 832
PspPPI RGGWCCY 1 cut(s) 272
PstI CTGCAG 2 cut(s) 1093, 1228
PsyI GACNNNGTC 1 cut(s) 53
PvuII CAGCTG 2 cut(s) 521, 1094
RsaI GTAC 3 cut(s) 569, 932, 1067
RsaNI GTAC 3 cut(s) 568, 931, 1066
SacI GAGCTC 1 cut(s) 1035
SaqAI TTAA 4 cut(s) 480, 528, 606, 1181
SatI GCNGC 8 cut(s) 18, 245, 288, 1086, 1089, 1092, 1104, 1224
Sau3AI GATC 5 cut(s) 441, 650, 736, 756, 883
Sau96I GGNCC 4 cut(s) 272, 407, 831, 832
SchI GAGTC 2 cut(s) 424, 629
ScrFI CCNGG 2 cut(s) 993, 1202
SduI GDGCHC 3 cut(s) 9, 835, 1035
SexAI ACCWGGT 1 cut(s) 991
SfaNI GCATC 2 cut(s) 690, 818
SfcI CTRYAG 2 cut(s) 1089, 1224
SinI GGWCC 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 7 cut(s) 315, 536, 689, 732, 909, 1038, 1256
SsiI CCGC 1 cut(s) 287
SspMI CTAG 6 cut(s) 12, 171, 765, 782, 966, 1025
SstI GAGCTC 1 cut(s) 1035
StyD4I CCNGG 2 cut(s) 991, 1200
TaaI ACNGT 5 cut(s) 192, 340, 724, 940, 1179
TaiI ACGT 1 cut(s) 1111
TaqI TCGA 4 cut(s) 440, 454, 739, 1262
TasI AATT 7 cut(s) 315, 536, 689, 732, 909, 1038, 1256
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 2 cut(s) 226, 515
Tru1I TTAA 4 cut(s) 480, 528, 606, 1181
Tru9I TTAA 4 cut(s) 480, 528, 606, 1181
TscAI CASTG 5 cut(s) 297, 387, 592, 883, 1165
TseFI GTSAC 1 cut(s) 621
TseI GCWGC 7 cut(s) 17, 244, 1085, 1088, 1091, 1103, 1223
Tsp45I GTSAC 1 cut(s) 621
TspDTI ATGAA 4 cut(s) 78, 170, 375, 549
TspRI CASTG 5 cut(s) 297, 387, 592, 883, 1165
Tth111I GACNNNGTC 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 689, 1256
XbaI TCTAGA 1 cut(s) 965
XcmI CCANNNNNNNNNTGG 1 cut(s) 1201
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 6 cut(s) 12, 171, 765, 782, 966, 1025
Zsp2I ATGCAT 2 cut(s) 874, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.