FvH4_4g26971

Core-2/I-Branching enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001447
Physical Location & Seq
Reverse (-)
28147505 .. 28149734
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26971.t1

Sequence Viewer

Length: 1146 bp
ATGAAGGAGCGCAATCTATACCCACTAAAAATGTTTCAGAAAGTGTTCAATGTCAAACTCCATCTCCTCAATCTCGTTTCTTATTTTCTGTTCTTCATCGGTGGTTTCACCCTTGGAGTATTACTCACCTCATCATATCTAAGAAACACTTCATTAACTTTACAAACAGACCAATTCTCCGTTGCTAAATCCTATCTGAGTCATGTTCCTACAGGACTAAAAGCATATCTGGAGCCGCCTAATGTTATGCACGACATGAACGATGAAGAATTGCTATGGAGAGCTTCAATGGCTCCTCGGATTCCATTCCATCGAGTCCCAAAAGTTGCGTTCATGTTCTTGACAAAGGGGCCTGTACATTTGGCCCCTTTGTGGGAGAAGTTCTTCAAAGGGCATCAGGGCTTGTATTCGATCTATGTTCACCCAGATCCATCTTACAATGCATCATCATCACACCCAGAAAGTCCTATTTTTCAAGGCAGAAGAATTCCTAGTCAGATAGTAAAATGGGCACAGGTGAATGTGATTGAGGCCGAGAGGCGCCTAATTGCGAATGCTCTTCTTGATATCTCAAACCTTCGCTTTGTTCTCCTCTCAGAAGCATGCATTCCCCTCTACAACTTCTCTACTATCTACTCTTACCTCCTAAACTCCCAAGAAATTTTTGTGGAGGTCTTTGATGATCCAAGTTCAGTTGGCCGCGGCCGATATAATTCAAGTTACTACCCAATGATCACATTGGATCAGTGGAGAAAAGGGTCACAGTGGGTTGAGATTGATAGAGACATTGCCACTGAAGTTATCTCGGACCGGACATACTTTCCAGCCTTCCGGTTAGGCAACCGCTCTTGTTTTGCAGATGAACATTACTTGCCTACATTTGTGAACCAAAAATTTTCGGCAAAGAATTCAAACAGAAGTCTCACCTGGGTTGATTGGTCTACACATGGCCCTCACCCTGTCGAGTACAATAGCACAACGGCTGAGCTTCTGGATATCCTGCGCAATGGTAATGGTACCAGATGCTTATATAATCAAAGGACAAGCAATATATGTTTCTTATTTGCTAGGAAGTTCCTGCCTCCTGCTTTACATAGCCTTCTCAGGCTTGCCCCAAAGATCATGCATTTCAACACAGATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

382

Amino Acids

44.03

Weight (kDa)

9.19

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 109 - 329 1.6e-71 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1004
Acc65I GGTACC 1 cut(s) 1016
AccB1I GGYRCC 2 cut(s) 540, 1016
AccBSI CCGCTC 1 cut(s) 846
AccI GTMKAC 1 cut(s) 941
AccII CGCG 1 cut(s) 702
AciI CCGC 4 cut(s) 236, 700, 702, 844
AclWI GGATC 3 cut(s) 422, 677, 750
AcoI YGGCCR 2 cut(s) 697, 703
AcsI RAATTY 4 cut(s) 486, 660, 893, 907
AcuI CTGAAG 1 cut(s) 816
AcyI GRCGYC 1 cut(s) 541
AfaI GTAC 3 cut(s) 357, 968, 1018
AfiI CCNNNNNNNGG 2 cut(s) 372, 373
AgsI TTSAA 7 cut(s) 49, 288, 388, 476, 717, 912, 1132
AjnI CCWGG 1 cut(s) 926
AluBI AGCT 2 cut(s) 284, 988
AluI AGCT 2 cut(s) 284, 988
Alw26I GTCTC 2 cut(s) 777, 926
AlwI GGATC 3 cut(s) 422, 677, 750
AoxI GGCC 6 cut(s) 350, 363, 531, 697, 703, 949
ApoI RAATTY 4 cut(s) 486, 660, 893, 907
Asp700I GAANNNNTTC 3 cut(s) 44, 148, 383
Asp718I GGTACC 1 cut(s) 1016
AspLEI GCGC 3 cut(s) 12, 543, 1005
AspS9I GGNCC 4 cut(s) 350, 364, 808, 950
AsuHPI GGTGA 6 cut(s) 100, 118, 413, 529, 916, 947
AvaII GGWCC 1 cut(s) 808
BaeGI GKGCMC 1 cut(s) 514
BanI GGYRCC 2 cut(s) 540, 1016
BccI CCATC 3 cut(s) 69, 318, 439
BceAI ACGGC 1 cut(s) 996
BciT130I CCWGG 1 cut(s) 928
BclI TGATCA 1 cut(s) 732
BcoDI GTCTC 2 cut(s) 777, 926
BfaI CTAG 2 cut(s) 492, 1068
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 544
BisI GCNGC 3 cut(s) 236, 700, 703
BlpI GCTNAGC 1 cut(s) 984
BlsI GCNGC 3 cut(s) 237, 701, 704
Bme1390I CCNGG 1 cut(s) 928
Bme18I GGWCC 1 cut(s) 808
BmgT120I GGNCC 4 cut(s) 350, 364, 808, 950
BmiI GGNNCC 6 cut(s) 234, 294, 351, 366, 542, 1018
BmrFI CCNGG 1 cut(s) 928
BmsI GCATC 3 cut(s) 403, 452, 1013
BplI GAGNNNNNCTC 2 cut(s) 108, 140
BpmI CTGGAG 1 cut(s) 251
Bpu1102I GCTNAGC 1 cut(s) 984
BsaHI GRCGYC 1 cut(s) 541
BsaJI CCNNGG 4 cut(s) 112, 296, 700, 927
BsaWI WCCGGW 2 cut(s) 810, 831
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 373
Bse3DI GCAATG 2 cut(s) 786, 1012
BseBI CCWGG 1 cut(s) 928
BseDI CCNNGG 4 cut(s) 112, 296, 700, 927
BseLI CCNNNNNNNGG 2 cut(s) 372, 373
BseMI GCAATG 2 cut(s) 786, 1012
BseMII CTCAG 4 cut(s) 188, 609, 975, 1117
BseRI GAGGAG 3 cut(s) 56, 285, 581
BseSI GKGCMC 1 cut(s) 514
BseX3I CGGCCG 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 702
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 6 cut(s) 352, 365, 533, 699, 705, 951
BshNI GGYRCC 2 cut(s) 540, 1016
BsiEI CGRYCG 1 cut(s) 706
BsiSI CCGG 2 cut(s) 811, 832
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 372, 373
BsmAI GTCTC 2 cut(s) 777, 926
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 2 cut(s) 559, 606
BsnI GGCC 6 cut(s) 352, 365, 533, 699, 705, 951
Bsp1286I GDGCHC 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 6 cut(s) 411, 427, 682, 732, 742, 1119
Bsp1720I GCTNAGC 1 cut(s) 984
BspACI CCGC 4 cut(s) 236, 700, 702, 844
BspANI GGCC 6 cut(s) 352, 365, 533, 699, 705, 951
BspCNI CTCAG 4 cut(s) 189, 608, 976, 1116
BspFNI CGCG 1 cut(s) 702
BspLI GGNNCC 6 cut(s) 234, 294, 351, 366, 542, 1018
BspPI GGATC 3 cut(s) 422, 677, 750
BspQI GCTCTTC 1 cut(s) 564
BspT107I GGYRCC 2 cut(s) 540, 1016
BsrBI CCGCTC 1 cut(s) 846
BsrDI GCAATG 2 cut(s) 786, 1012
BsrGI TGTACA 1 cut(s) 355
BssECI CCNNGG 4 cut(s) 112, 296, 700, 927
BssMI GATC 6 cut(s) 411, 427, 682, 732, 742, 1119
BssNI GRCGYC 1 cut(s) 541
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 928
Bst4CI ACNGT 1 cut(s) 765
Bst6I CTCTTC 1 cut(s) 564
BstACI GRCGYC 1 cut(s) 541
BstAUI TGTACA 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 604, 1110
BstDEI CTNAG 5 cut(s) 140, 197, 595, 984, 1103
BstDSI CCRYGG 1 cut(s) 700
BstFNI CGCG 1 cut(s) 702
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 3 cut(s) 12, 543, 1005
BstKTI GATC 6 cut(s) 414, 430, 685, 735, 745, 1122
BstMAI GTCTC 2 cut(s) 777, 926
BstMBI GATC 6 cut(s) 411, 427, 682, 732, 742, 1119
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 928
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 926
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 514
BstUI CGCG 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BstZI CGGCCG 1 cut(s) 703
BsuRI GGCC 6 cut(s) 352, 365, 533, 699, 705, 951
BtgI CCRYGG 1 cut(s) 700
BtsIMutI CAGTG 3 cut(s) 752, 770, 792
Cac8I GCNNGC 2 cut(s) 604, 1110
CfoI GCGC 3 cut(s) 12, 543, 1005
Cfr13I GGNCC 4 cut(s) 350, 364, 808, 950
Cfr42I CCGCGG 1 cut(s) 703
CpoI CGGWCCG 1 cut(s) 808
Csp6I GTAC 3 cut(s) 356, 967, 1017
CspI CGGWCCG 1 cut(s) 808
CviAII CATG 6 cut(s) 203, 256, 334, 603, 947, 1123
CviQI GTAC 3 cut(s) 356, 967, 1017
DdeI CTNAG 5 cut(s) 140, 197, 595, 984, 1103
DinI GGCGCC 1 cut(s) 542
DpnI GATC 6 cut(s) 413, 429, 684, 734, 744, 1121
DpnII GATC 6 cut(s) 411, 427, 682, 732, 742, 1119
EaeI YGGCCR 2 cut(s) 697, 703
EagI CGGCCG 1 cut(s) 703
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
EclXI CGGCCG 1 cut(s) 703
Eco130I CCWWGG 1 cut(s) 112
Eco32I GATATC 2 cut(s) 568, 997
Eco47I GGWCC 1 cut(s) 808
Eco52I CGGCCG 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 816
EcoO109I RGGNCCY 1 cut(s) 350
EcoRI GAATTC 2 cut(s) 486, 907
EcoRII CCWGG 1 cut(s) 926
EcoRV GATATC 2 cut(s) 568, 997
EcoT14I CCWWGG 1 cut(s) 112
EcoT22I ATGCAT 3 cut(s) 445, 608, 1128
EgeI GGCGCC 1 cut(s) 542
EheI GGCGCC 1 cut(s) 542
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 6 cut(s) 206, 259, 337, 606, 950, 1126
FalI AAGNNNNNCTT 2 cut(s) 133, 165
FaqI GGGAC 1 cut(s) 302
FatI CATG 6 cut(s) 202, 255, 333, 602, 946, 1122
FbaI TGATCA 1 cut(s) 732
FblI GTMKAC 1 cut(s) 941
Fnu4HI GCNGC 3 cut(s) 236, 700, 703
Fsp4HI GCNGC 3 cut(s) 236, 700, 703
FspBI CTAG 2 cut(s) 492, 1068
FspI TGCGCA 1 cut(s) 1004
GlaI GCGC 3 cut(s) 11, 542, 1004
GluI GCNGC 3 cut(s) 236, 700, 703
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 6 cut(s) 352, 365, 533, 699, 705, 951
HapII CCGG 2 cut(s) 811, 832
HhaI GCGC 3 cut(s) 12, 543, 1005
Hin1I GRCGYC 1 cut(s) 541
Hin1II CATG 6 cut(s) 206, 259, 337, 606, 950, 1126
Hin6I GCGC 3 cut(s) 10, 541, 1003
HinP1I GCGC 3 cut(s) 10, 541, 1003
HinfI GANTC 4 cut(s) 199, 301, 315, 1139
HpaII CCGG 2 cut(s) 811, 832
HphI GGTGA 6 cut(s) 100, 118, 413, 529, 916, 947
Hpy166II GTNNAC 3 cut(s) 421, 886, 942
Hpy188I TCNGA 6 cut(s) 39, 198, 300, 498, 598, 808
Hpy188III TCNNGA 4 cut(s) 230, 340, 563, 992
Hpy8I GTNNAC 3 cut(s) 421, 886, 942
HpyAV CCTTC 3 cut(s) 587, 838, 1109
HpyCH4III ACNGT 1 cut(s) 765
HpyCH4V TGCA 5 cut(s) 250, 443, 606, 857, 1126
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 5 cut(s) 140, 197, 595, 984, 1103
Hsp92I GRCGYC 1 cut(s) 541
Hsp92II CATG 6 cut(s) 206, 259, 337, 606, 950, 1126
HspAI GCGC 3 cut(s) 10, 541, 1003
KasI GGCGCC 1 cut(s) 540
KpnI GGTACC 1 cut(s) 1020
Ksp22I TGATCA 1 cut(s) 732
KspI CCGCGG 1 cut(s) 703
Kzo9I GATC 6 cut(s) 411, 427, 682, 732, 742, 1119
LguI GCTCTTC 1 cut(s) 564
LmnI GCTCC 3 cut(s) 7, 232, 298
LweI GCATC 3 cut(s) 403, 452, 1013
MaeI CTAG 2 cut(s) 492, 1068
MaeIII GTNAC 2 cut(s) 719, 759
MalI GATC 6 cut(s) 413, 429, 684, 734, 744, 1121
MbiI CCGCTC 1 cut(s) 846
MboI GATC 6 cut(s) 411, 427, 682, 732, 742, 1119
MboII GAAGA 5 cut(s) 85, 278, 376, 495, 551
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 8 cut(s) 173, 269, 486, 546, 660, 712, 893, 907
Mly113I GGCGCC 1 cut(s) 541
MlyI GAGTC 2 cut(s) 208, 324
Mph1103I ATGCAT 3 cut(s) 445, 608, 1128
MroXI GAANNNNTTC 3 cut(s) 44, 148, 383
MseI TTAA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 702
MspI CCGG 2 cut(s) 811, 832
MspR9I CCNGG 1 cut(s) 928
Mva1269I GAATGC 2 cut(s) 559, 606
MvaI CCWGG 1 cut(s) 928
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 1 cut(s) 290
NarI GGCGCC 1 cut(s) 541
NdeII GATC 6 cut(s) 411, 427, 682, 732, 742, 1119
NlaIII CATG 6 cut(s) 206, 259, 337, 606, 950, 1126
NlaIV GGNNCC 6 cut(s) 234, 294, 351, 366, 542, 1018
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 1 cut(s) 759
NsbI TGCGCA 1 cut(s) 1004
NsiI ATGCAT 3 cut(s) 445, 608, 1128
NspI RCATGY 1 cut(s) 606
PaeI GCATGC 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 2 cut(s) 559, 606
PdmI GAANNNNTTC 3 cut(s) 44, 148, 383
PfeI GAWTC 2 cut(s) 301, 1139
PkrI GCNGC 3 cut(s) 237, 701, 704
PleI GAGTC 2 cut(s) 207, 323
PluTI GGCGCC 1 cut(s) 544
PpsI GAGTC 2 cut(s) 207, 323
Psp6I CCWGG 1 cut(s) 926
PspGI CCWGG 1 cut(s) 926
PspN4I GGNNCC 6 cut(s) 234, 294, 351, 366, 542, 1018
PspPI GGNCC 4 cut(s) 350, 364, 808, 950
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 3 cut(s) 357, 968, 1018
RsaNI GTAC 3 cut(s) 356, 967, 1017
Rsr2I CGGWCCG 1 cut(s) 808
RsrII CGGWCCG 1 cut(s) 808
SacII CCGCGG 1 cut(s) 703
SapI GCTCTTC 1 cut(s) 564
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 3 cut(s) 236, 700, 703
Sau3AI GATC 6 cut(s) 411, 427, 682, 732, 742, 1119
Sau96I GGNCC 4 cut(s) 350, 364, 808, 950
SchI GAGTC 2 cut(s) 208, 324
ScrFI CCNGG 1 cut(s) 928
SduI GDGCHC 1 cut(s) 514
SetI ASST 8 cut(s) 131, 286, 519, 579, 645, 675, 929, 990
SfaNI GCATC 3 cut(s) 403, 452, 1013
SfcI CTRYAG 1 cut(s) 210
SfoI GGCGCC 1 cut(s) 542
Sfr303I CCGCGG 1 cut(s) 703
SgrBI CCGCGG 1 cut(s) 703
SinI GGWCC 1 cut(s) 808
SphI GCATGC 1 cut(s) 606
Sse9I AATT 8 cut(s) 173, 269, 486, 546, 660, 712, 893, 907
SsiI CCGC 4 cut(s) 236, 700, 702, 844
SspDI GGCGCC 1 cut(s) 540
SspMI CTAG 2 cut(s) 492, 1068
StyD4I CCNGG 1 cut(s) 926
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 765
TaqI TCGA 3 cut(s) 313, 410, 963
TasI AATT 8 cut(s) 173, 269, 486, 546, 660, 712, 893, 907
TatI WGTACW 2 cut(s) 355, 966
TauI GCSGC 3 cut(s) 238, 702, 705
TfiI GAWTC 2 cut(s) 301, 1139
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 3 cut(s) 752, 770, 799
TseFI GTSAC 1 cut(s) 759
Tsp45I GTSAC 1 cut(s) 759
TspDTI ATGAA 7 cut(s) 17, 85, 141, 272, 279, 322, 876
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 3 cut(s) 752, 770, 799
VpaK11BI GGWCC 1 cut(s) 808
XapI RAATTY 4 cut(s) 486, 660, 893, 907
XceI RCATGY 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 941
XmnI GAANNNNTTC 3 cut(s) 44, 148, 383
XspI CTAG 2 cut(s) 492, 1068
Zsp2I ATGCAT 3 cut(s) 445, 608, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.