Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007855.1

Orthogroup ID

OG0001447

Physical Location & Seq

Genomic Coordinates Reverse (-)

17487 .. 19765

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007855.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgccaaatgtgaagaagatagagtctgggccgtcaatgagagatacctcagtgtcgagatcggaggaggagacggaggagttggtgggagataaaggtggaggaagcagctcaggtcttgtccaaagtaggaaagctgccgacaccggagaccagaagagtcatggcccagttcctgttggacacggtgcgaatgctcttctcgacatctcaaaccaacgttttgttctgctttcagaatcatgcatccccctcttcaatttttccacggtctactcttacctcataaacaccaacaagacttttgtgcaggtctatgatgatccaagcggtgttgggcgtggccgttatgatgaaagctactaccctcaaatcacattggaccagtggaggaaaggatcgcagtgggttgaaatagatagagaccttgccattgaagttgtttcagatcaaaaatactacacaactttccagaaactctgcaaaggctattgctttgcagatgagcattacttgccaacatttatgaacataagatttccgaaaaagaattcaaacaggactgtgacctgggttgattggtctaggggcggacctcatcctgtcgagtacgcgagcacagatgtcacggttgagcttctgagtactctgaggaagggtaacggctggtgtgattacaatggaaggggcacagatgtttgtttcttgttcgcccggaagttctcgccaaattctttggataagctgctgagcattgcaccacagttaatgcaattcaacacagacattgataaagagtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

267

Amino Acids

30.13

Weight (kDa)

5.65

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68390
fragaria_vesca	FvH4_4g26971 FvH4_4g26972 FvH4_4g26973
malus_domestica	MD13G1036900.v1.1 MD13G1037100.v1.1 MD13G1037500.v1.1 MD13G1038500.v1.1 MD13G1038600.v1.1 MD13G1038700.v1.1 MD13G1038800.v1.1 MD16G1014100.v1.1
prunus_persica	Prupe.1G314600_v2.0.a1 Prupe.1G314600_v2.0.a1 Prupe.1G314700_v2.0.a1 Prupe.1G314800_v2.0.a1
pyrus_communis	pycom13g03350 pycom16g03430
rosa_chinensis	RchiOBHm_Chr4g0434731 RchiOBHm_Chr4g0434741 RchiOBHm_Chr4g0434751
rosa_laevigata	RLG00000006652 RLG00000006653 RLG00000006654
rosa_multiflora	Rmu_sc0007855.1_g000002 Rmu_sc0017904.1_g000004 Rmu_sc0017904.1_g000005 Rmu_sc0017904.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375940 Rroxscaffold_5G00375950 Rroxscaffold_5G00375960
rosa_rugosa	Rorug04G0277900 Rorug04G0278000 Rorug04G0278100
rosa_samantha	Rh4AG334300 Rh4AG334400 Rh4AG334500 Rh4BG342800 Rh4BG343000 Rh4BG343100 Rh4CG357200 Rh4CG357400 Rh4CG357500 Rh4DG336600 Rh4DG336700 Rh4DG336800
rosa_wichuraiana	Rw4G028990 Rw4G029000 Rw4G029020 Rw4G029030 Rw4G029160 Rw4G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	614
AciI	CCGC	2 cut(s)	330, 591
AclI	AACGTT	1 cut(s)	220
AclWI	GGATC	2 cut(s)	317, 406
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	2 cut(s)	550, 730
AfaI	GTAC	3 cut(s)	611, 646, 800
AgsI	TTSAA	5 cut(s)	259, 413, 437, 555, 778
AjnI	CCWGG	1 cut(s)	569
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	5 cut(s)	111, 137, 360, 637, 745
AluI	AGCT	5 cut(s)	111, 137, 360, 637, 745
Alw21I	GWGCWC	1 cut(s)	620
Alw26I	GTCTC	3 cut(s)	65, 144, 417
AlwI	GGATC	2 cut(s)	317, 406
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	29, 166, 343
ApeKI	GCWGC	3 cut(s)	108, 137, 745
ApoI	RAATTY	2 cut(s)	550, 730
AspS9I	GGNCC	4 cut(s)	29, 167, 382, 593
AsuC2I	CCSGG	1 cut(s)	715
AvaII	GGWCC	2 cut(s)	382, 593
BaeGI	GKGCMC	1 cut(s)	692
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
Bbv12I	GWGCWC	1 cut(s)	620
BbvI	GCAGC	3 cut(s)	120, 124, 732
BceAI	ACGGC	3 cut(s)	16, 330, 679
BciT130I	CCWGG	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	715
BcoDI	GTCTC	3 cut(s)	65, 144, 417
BfaI	CTAG	2 cut(s)	585, 802
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	3 cut(s)	109, 138, 746
BlpI	GCTNAGC	1 cut(s)	749
BlsI	GCNGC	3 cut(s)	110, 139, 747
BmcAI	AGTACT	2 cut(s)	646, 800
Bme1390I	CCNGG	2 cut(s)	571, 715
Bme18I	GGWCC	2 cut(s)	382, 593
BmgT120I	GGNCC	4 cut(s)	29, 167, 382, 593
BmrFI	CCNGG	2 cut(s)	571, 715
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	715
BsaI	GGTCTC	2 cut(s)	144, 417
BsaJI	CCNNGG	2 cut(s)	267, 570
BsaWI	WCCGGW	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	170, 385
Bse3DI	GCAATG	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	2 cut(s)	267, 570
BseGI	GGATG	2 cut(s)	246, 598
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	5 cut(s)	63, 126, 632, 641, 740
BseNI	ACTGG	2 cut(s)	170, 385
BseRI	GAGGAG	3 cut(s)	80, 83, 92
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	3 cut(s)	120, 124, 732
BsgI	GTGCAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	614
BshFI	GGCC	3 cut(s)	31, 168, 345
BsiHKAI	GWGCWC	1 cut(s)	620
BsiSI	CCGG	2 cut(s)	147, 715
BsmAI	GTCTC	3 cut(s)	65, 144, 417
BsmBI	CGTCTC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	31, 168, 345
Bso31I	GGTCTC	2 cut(s)	144, 417
Bsp1286I	GDGCHC	2 cut(s)	620, 692
Bsp143I	GATC	4 cut(s)	59, 322, 398, 448
Bsp1720I	GCTNAGC	1 cut(s)	749
BspACI	CCGC	2 cut(s)	330, 591
BspANI	GGCC	3 cut(s)	31, 168, 345
BspCNI	CTCAG	5 cut(s)	62, 125, 633, 642, 741
BspFNI	CGCG	1 cut(s)	614
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	2 cut(s)	317, 406
BspQI	GCTCTTC	1 cut(s)	204
BspTNI	GGTCTC	2 cut(s)	144, 417
BsrDI	GCAATG	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	170, 385
BssECI	CCNNGG	2 cut(s)	267, 570
BssMI	GATC	4 cut(s)	59, 322, 398, 448
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	5 cut(s)	188, 271, 565, 631, 765
Bst6I	CTCTTC	3 cut(s)	152, 204, 260
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	5 cut(s)	49, 112, 641, 650, 749
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	246, 598
BstFNI	CGCG	1 cut(s)	614
BstKTI	GATC	4 cut(s)	62, 325, 401, 451
BstMAI	GTCTC	3 cut(s)	65, 144, 417
BstMBI	GATC	4 cut(s)	59, 322, 398, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstNI	CCWGG	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	569, 713
BstSLI	GKGCMC	1 cut(s)	692
BstUI	CGCG	1 cut(s)	614
BstV1I	GCAGC	3 cut(s)	120, 124, 732
BsuRI	GGCC	3 cut(s)	31, 168, 345
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	246, 598
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	57, 392, 410
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	616
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr13I	GGNCC	4 cut(s)	29, 167, 382, 593
Csp6I	GTAC	3 cut(s)	610, 645, 799
CviAII	CATG	2 cut(s)	164, 243
CviQI	GTAC	3 cut(s)	610, 645, 799
DdeI	CTNAG	5 cut(s)	49, 112, 641, 650, 749
DpnI	GATC	4 cut(s)	61, 324, 400, 450
DpnII	GATC	4 cut(s)	59, 322, 398, 448
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	3 cut(s)	152, 204, 260
EarI	CTCTTC	3 cut(s)	152, 204, 260
EciI	GGCGGA	1 cut(s)	606
Eco31I	GGTCTC	2 cut(s)	144, 417
Eco47I	GGWCC	2 cut(s)	382, 593
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	569
EcoT22I	ATGCAT	1 cut(s)	248
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	167, 246
FaiI	YATR	7 cut(s)	165, 244, 287, 318, 351, 527, 533
FatI	CATG	2 cut(s)	163, 242
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	109, 138, 746
FokI	GGATG	2 cut(s)	233, 585
Fsp4HI	GCNGC	3 cut(s)	109, 138, 746
FspBI	CTAG	2 cut(s)	585, 802
GluI	GCNGC	3 cut(s)	109, 138, 746
HaeIII	GGCC	3 cut(s)	31, 168, 345
HapII	CCGG	2 cut(s)	147, 715
Hin1II	CATG	2 cut(s)	167, 246
HinfI	GANTC	3 cut(s)	23, 160, 239
HpaII	CCGG	2 cut(s)	147, 715
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	6 cut(s)	64, 238, 448, 543, 642, 651
Hpy188III	TCNNGA	3 cut(s)	57, 203, 472
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	649, 678
HpyCH4III	ACNGT	5 cut(s)	188, 271, 565, 631, 765
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	6 cut(s)	246, 310, 483, 500, 758, 772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	5 cut(s)	49, 112, 641, 650, 749
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	167, 246
Kzo9I	GATC	4 cut(s)	59, 322, 398, 448
LguI	GCTCTTC	1 cut(s)	204
Lsp1109I	GCAGC	3 cut(s)	120, 124, 732
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	2 cut(s)	585, 802
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	3 cut(s)	565, 625, 659
MalI	GATC	4 cut(s)	61, 324, 400, 450
MboI	GATC	4 cut(s)	59, 322, 398, 448
MboII	GAAGA	5 cut(s)	25, 28, 169, 191, 247
MhlI	GDGCHC	2 cut(s)	620, 692
MluCI	AATT	4 cut(s)	259, 550, 730, 773
MlyI	GAGTC	2 cut(s)	32, 169
MmeI	TCCRAC	1 cut(s)	160
Mph1103I	ATGCAT	1 cut(s)	248
MseI	TTAA	1 cut(s)	767
MspI	CCGG	2 cut(s)	147, 715
MspR9I	CCNGG	2 cut(s)	571, 715
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	571
MvnI	CGCG	1 cut(s)	614
MwoI	GCNNNNNNNGC	1 cut(s)	514
NciI	CCSGG	1 cut(s)	715
NdeII	GATC	4 cut(s)	59, 322, 398, 448
NlaIII	CATG	2 cut(s)	167, 246
NmuCI	GTSAC	2 cut(s)	565, 625
NsiI	ATGCAT	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	204
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	110, 139, 747
PleI	GAGTC	2 cut(s)	31, 168
PpsI	GAGTC	2 cut(s)	31, 168
Psp1406I	AACGTT	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspPI	GGNCC	4 cut(s)	29, 167, 382, 593
PstNI	CAGNNNCTG	1 cut(s)	176
RsaI	GTAC	3 cut(s)	611, 646, 800
RsaNI	GTAC	3 cut(s)	610, 645, 799
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	767
SatI	GCNGC	3 cut(s)	109, 138, 746
Sau3AI	GATC	4 cut(s)	59, 322, 398, 448
Sau96I	GGNCC	4 cut(s)	29, 167, 382, 593
ScaI	AGTACT	2 cut(s)	646, 800
SchI	GAGTC	2 cut(s)	32, 169
ScrFI	CCNGG	2 cut(s)	571, 715
SduI	GDGCHC	2 cut(s)	620, 692
SfaNI	GCATC	1 cut(s)	255
SinI	GGWCC	2 cut(s)	382, 593
Sse9I	AATT	4 cut(s)	259, 550, 730, 773
SsiI	CCGC	2 cut(s)	330, 591
SspMI	CTAG	2 cut(s)	585, 802
StyD4I	CCNGG	2 cut(s)	569, 713
TaaI	ACNGT	5 cut(s)	188, 271, 565, 631, 765
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	3 cut(s)	56, 204, 606
TasI	AATT	4 cut(s)	259, 550, 730, 773
TatI	WGTACW	2 cut(s)	644, 798
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	767
Tru9I	TTAA	1 cut(s)	767
TscAI	CASTG	3 cut(s)	57, 392, 410
TseFI	GTSAC	2 cut(s)	565, 625
TseI	GCWGC	3 cut(s)	108, 137, 745
Tsp45I	GTSAC	2 cut(s)	565, 625
TspDTI	ATGAA	2 cut(s)	369, 542
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	3 cut(s)	57, 392, 410
VpaK11BI	GGWCC	2 cut(s)	382, 593
XapI	RAATTY	2 cut(s)	550, 730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	2 cut(s)	585, 802
ZrmI	AGTACT	2 cut(s)	646, 800
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.