Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001447

Physical Location & Seq

Genomic Coordinates Reverse (-)

50582990 .. 50583577

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG342800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAGGATCGAAATCTATGCCCACTAAACTTGTTGTCAAAAGTCTTCAATGTCAAACACCACCTCCTCAATCTCGTTTCTCATTTTCTATTCTTCATTGGTGGTTTCACCCTTGGAGTATTACTCACCTCCTCATATCTAAGAAACACTTCATTAACCTTACAAATAGACCAATTCTCCATAGCTACTTCATCACTTCCATCCAATAATTCTAATTCACAAATGTTAGTGCCAACAAATGTGAAGGCCCCAACATCCTACATGACCCATGTTCGTATAGGACTAAAAGCATATCTGGAGCCGCCTAATGTTATGCACGACATGAATGATGAAGAATTGCTATGGAGAGCTTCGACGGCTCCTCGGATTTCTGAGTATCCATTCCATCGAGTCCCAAAAGTTGCTTTCATGTTCTTGACAAAGGGACCTGTACATTTGGCCCCATTGTGGGAGAAGTTCTTCAAAGGACATCAAGGCTTGTACTCAATTTATGTTCACTCAGATCCATCTTACAACGCATCATCACACCCAGAAAGTCCTGTTTTTCAAGGCCGAAGAATTCCAAGTCAGGACAGCTTTTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

195

Amino Acids

22.14

Weight (kDa)

9.41

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	134 - 191	5.7e-14	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68390
fragaria_vesca	FvH4_4g26971 FvH4_4g26972 FvH4_4g26973
malus_domestica	MD13G1036900.v1.1 MD13G1037100.v1.1 MD13G1037500.v1.1 MD13G1038500.v1.1 MD13G1038600.v1.1 MD13G1038700.v1.1 MD13G1038800.v1.1 MD16G1014100.v1.1
prunus_persica	Prupe.1G314600_v2.0.a1 Prupe.1G314600_v2.0.a1 Prupe.1G314700_v2.0.a1 Prupe.1G314800_v2.0.a1
pyrus_communis	pycom13g03350 pycom16g03430
rosa_chinensis	RchiOBHm_Chr4g0434731 RchiOBHm_Chr4g0434741 RchiOBHm_Chr4g0434751
rosa_laevigata	RLG00000006652 RLG00000006653 RLG00000006654
rosa_multiflora	Rmu_sc0007855.1_g000002 Rmu_sc0017904.1_g000004 Rmu_sc0017904.1_g000005 Rmu_sc0017904.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375940 Rroxscaffold_5G00375950 Rroxscaffold_5G00375960
rosa_rugosa	Rorug04G0277900 Rorug04G0278000 Rorug04G0278100
rosa_samantha	Rh4AG334300 Rh4AG334400 Rh4AG334500 Rh4BG342800 Rh4BG343000 Rh4BG343100 Rh4CG357200 Rh4CG357400 Rh4CG357500 Rh4DG336600 Rh4DG336700 Rh4DG336800
rosa_wichuraiana	Rw4G028990 Rw4G029000 Rw4G029020 Rw4G029030 Rw4G029160 Rw4G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	2 cut(s)	15, 497
AcsI	RAATTY	1 cut(s)	558
AfaI	GTAC	2 cut(s)	432, 482
AfiI	CCNNNNNNNGG	2 cut(s)	447, 448
AgsI	TTSAA	3 cut(s)	49, 463, 548
AluBI	AGCT	3 cut(s)	185, 350, 576
AluI	AGCT	3 cut(s)	185, 350, 576
AlwI	GGATC	2 cut(s)	15, 497
AoxI	GGCC	3 cut(s)	246, 438, 550
ApoI	RAATTY	1 cut(s)	558
ArsI	GACNNNNNNTTYG	1 cut(s)	563
Asp700I	GAANNNNTTC	2 cut(s)	148, 458
AspS9I	GGNCC	3 cut(s)	247, 425, 439
AsuHPI	GGTGA	2 cut(s)	100, 118
AvaII	GGWCC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	37
BccI	CCATC	3 cut(s)	208, 393, 514
BceAI	ACGGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	387
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	3 cut(s)	247, 425, 439
BmiI	GGNNCC	5 cut(s)	249, 300, 360, 426, 441
BmsI	GCATC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BpmI	CTGGAG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	112, 362
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 448
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	112, 362
BseGI	GGATG	2 cut(s)	200, 254
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	447, 448
BseMII	CTCAG	2 cut(s)	363, 513
BseRI	GAGGAG	3 cut(s)	56, 121, 351
BshFI	GGCC	3 cut(s)	248, 440, 552
BslFI	GGGAC	2 cut(s)	377, 438
BslI	CCNNNNNNNGG	2 cut(s)	447, 448
BsmFI	GGGAC	2 cut(s)	377, 438
BsnI	GGCC	3 cut(s)	248, 440, 552
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	7, 502
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	3 cut(s)	248, 440, 552
BspCNI	CTCAG	2 cut(s)	364, 512
BspLI	GGNNCC	5 cut(s)	249, 300, 360, 426, 441
BspPI	GGATC	2 cut(s)	15, 497
BsrGI	TGTACA	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	112, 362
BssMI	GATC	2 cut(s)	7, 502
BssT1I	CCWWGG	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	430
BstDEI	CTNAG	4 cut(s)	140, 372, 499, 585
BstF5I	GGATG	2 cut(s)	200, 254
BstKTI	GATC	2 cut(s)	10, 505
BstMBI	GATC	2 cut(s)	7, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	248, 440, 552
BtsCI	GGATG	2 cut(s)	200, 254
Cfr13I	GGNCC	3 cut(s)	247, 425, 439
Csp6I	GTAC	2 cut(s)	431, 481
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	4 cut(s)	262, 269, 322, 409
CviJI	RGCY	9 cut(s)	185, 248, 301, 350, 359, 440, 477, 552, 576
CviKI_1	RGCY	9 cut(s)	185, 248, 301, 350, 359, 440, 477, 552, 576
CviQI	GTAC	2 cut(s)	431, 481
DdeI	CTNAG	4 cut(s)	140, 372, 499, 585
DpnI	GATC	2 cut(s)	9, 504
DpnII	GATC	2 cut(s)	7, 502
Eco130I	CCWWGG	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	425
EcoO109I	RGGNCCY	2 cut(s)	247, 425
EcoRI	GAATTC	1 cut(s)	558
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	4 cut(s)	265, 272, 325, 412
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
FaqI	GGGAC	2 cut(s)	377, 438
FatI	CATG	4 cut(s)	261, 268, 321, 408
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	2 cut(s)	187, 241
Fsp4HI	GCNGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	3 cut(s)	248, 440, 552
Hin1II	CATG	4 cut(s)	265, 272, 325, 412
HinfI	GANTC	1 cut(s)	390
HphI	GGTGA	2 cut(s)	100, 118
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	3 cut(s)	366, 373, 502
Hpy188III	TCNNGA	3 cut(s)	296, 415, 569
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	4 cut(s)	140, 372, 499, 585
Hsp92II	CATG	4 cut(s)	265, 272, 325, 412
Kzo9I	GATC	2 cut(s)	7, 502
LmnI	GCTCC	2 cut(s)	298, 364
LpnPI	CCDG	5 cut(s)	281, 441, 543, 552, 554
LweI	GCATC	1 cut(s)	527
MalI	GATC	2 cut(s)	9, 504
MboI	GATC	2 cut(s)	7, 502
MboII	GAAGA	5 cut(s)	37, 85, 344, 451, 567
MflI	RGATCY	1 cut(s)	502
MluCI	AATT	6 cut(s)	173, 208, 214, 335, 486, 558
MlyI	GAGTC	1 cut(s)	399
MnlI	CCTC	5 cut(s)	74, 77, 139, 142, 372
MroXI	GAANNNNTTC	2 cut(s)	148, 458
MseI	TTAA	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	2 cut(s)	7, 502
NlaIII	CATG	4 cut(s)	265, 272, 325, 412
NlaIV	GGNNCC	5 cut(s)	249, 300, 360, 426, 441
PdmI	GAANNNNTTC	2 cut(s)	148, 458
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PpuMI	RGGWCCY	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	425
PspN4I	GGNNCC	5 cut(s)	249, 300, 360, 426, 441
PspPI	GGNCC	3 cut(s)	247, 425, 439
PspPPI	RGGWCCY	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	502
RsaI	GTAC	2 cut(s)	432, 482
RsaNI	GTAC	2 cut(s)	431, 481
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	2 cut(s)	7, 502
Sau96I	GGNCC	3 cut(s)	247, 425, 439
SchI	GAGTC	1 cut(s)	399
SetI	ASST	7 cut(s)	66, 131, 161, 187, 352, 430, 578
SfaNI	GCATC	1 cut(s)	527
SinI	GGWCC	1 cut(s)	425
Sse9I	AATT	6 cut(s)	173, 208, 214, 335, 486, 558
SsiI	CCGC	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	112
TaqI	TCGA	3 cut(s)	10, 353, 388
TasI	AATT	6 cut(s)	173, 208, 214, 335, 486, 558
TatI	WGTACW	2 cut(s)	430, 480
TauI	GCSGC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TspDTI	ATGAA	7 cut(s)	17, 85, 141, 180, 338, 345, 397
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	558
XmnI	GAANNNNTTC	2 cut(s)	148, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.