Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017904.1

Orthogroup ID

OG0001447

Physical Location & Seq

Genomic Coordinates Forward (+)

12508 .. 14008

Gene Structure 1501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017904.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgtctaacatgaccgaagttcatatacgagaattagaggcatttctaaagccgcctaaggttcggcacgacatggacgatgaggaattgttctggagagcttccatggcccctcggatacccgaatatccgttccaccgagttccgaaagttgctttcatgttcttgacaaggggacctgttcatttggctccattgtgggagaagttctttcaagggcaccaaggcttgttctcaatctatgtccactcagatccgtcttataatgaatcgtctcaccccgaaagcccagtctttcatggccgaagaattccaagtcagaaagcagaatgggggcaagtgaacatgattgaagccgagagccgcgtaattgcgaatgctcttctcgacatctcaaaccaacgttttgttctgctttcagaatcatgcatccccctcttcaatttctccacggtctactcttacctcataaacaccaacaagacttttgtgcaggtctatgatgatccaagcggtgttgggcgtggccgttatgatgaaagctactaccctcaaatcacattggaccagtggaggaaaggatcgcagtgggttgaaatagatagagaccttgccattgaagttgtttcagatcaaaaatactacacaactttccagaaactctgcaaaggctattgctttgcagatgagcattacttgccaacatttatgaacataagatttccgaaaaagaattcaaacaggactgtgacctgggttgattggtctaggggcggacctcatcctgtcgagtacgcgagcacagatgtcacggttgagcttctgagtactctgaggaagggtaacggctggtgtgattacaatggaaggggcacagatgtttgtttcttgttcgcccggaagttctcgccaaattctttggataagctgctgagcattgcaccacagttaatgcaattcaacacagacattgataaagagtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

328

Amino Acids

38.22

Weight (kDa)

6.22

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68390
fragaria_vesca	FvH4_4g26971 FvH4_4g26972 FvH4_4g26973
malus_domestica	MD13G1036900.v1.1 MD13G1037100.v1.1 MD13G1037500.v1.1 MD13G1038500.v1.1 MD13G1038600.v1.1 MD13G1038700.v1.1 MD13G1038800.v1.1 MD16G1014100.v1.1
prunus_persica	Prupe.1G314600_v2.0.a1 Prupe.1G314600_v2.0.a1 Prupe.1G314700_v2.0.a1 Prupe.1G314800_v2.0.a1
pyrus_communis	pycom13g03350 pycom16g03430
rosa_chinensis	RchiOBHm_Chr4g0434731 RchiOBHm_Chr4g0434741 RchiOBHm_Chr4g0434751
rosa_laevigata	RLG00000006652 RLG00000006653 RLG00000006654
rosa_multiflora	Rmu_sc0007855.1_g000002 Rmu_sc0017904.1_g000004 Rmu_sc0017904.1_g000005 Rmu_sc0017904.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375940 Rroxscaffold_5G00375950 Rroxscaffold_5G00375960
rosa_rugosa	Rorug04G0277900 Rorug04G0278000 Rorug04G0278100
rosa_samantha	Rh4AG334300 Rh4AG334400 Rh4AG334500 Rh4BG342800 Rh4BG343000 Rh4BG343100 Rh4CG357200 Rh4CG357400 Rh4CG357500 Rh4DG336600 Rh4DG336700 Rh4DG336800
rosa_wichuraiana	Rw4G028990 Rw4G029000 Rw4G029020 Rw4G029030 Rw4G029160 Rw4G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	2 cut(s)	366, 797
AciI	CCGC	4 cut(s)	53, 364, 513, 774
AclI	AACGTT	1 cut(s)	403
AclWI	GGATC	3 cut(s)	248, 500, 589
AcoI	YGGCCR	2 cut(s)	301, 526
AcsI	RAATTY	3 cut(s)	309, 733, 913
AfaI	GTAC	3 cut(s)	794, 829, 983
AgsI	TTSAA	7 cut(s)	215, 353, 442, 596, 620, 738, 961
AjnI	CCWGG	1 cut(s)	752
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AluBI	AGCT	4 cut(s)	101, 543, 820, 928
AluI	AGCT	4 cut(s)	101, 543, 820, 928
Alw21I	GWGCWC	1 cut(s)	803
Alw26I	GTCTC	2 cut(s)	279, 600
AlwI	GGATC	3 cut(s)	248, 500, 589
AoxI	GGCC	3 cut(s)	108, 301, 526
ApeKI	GCWGC	1 cut(s)	928
ApoI	RAATTY	3 cut(s)	309, 733, 913
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
AspS9I	GGNCC	4 cut(s)	109, 176, 565, 776
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	3 cut(s)	176, 565, 776
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	2 cut(s)	222, 875
BanI	GGYRCC	1 cut(s)	219
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
Bbv12I	GWGCWC	1 cut(s)	803
BbvI	GCAGC	1 cut(s)	915
BceAI	ACGGC	2 cut(s)	513, 862
BciT130I	CCWGG	1 cut(s)	754
BciVI	GTATCC	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	898
BcoDI	GTCTC	2 cut(s)	279, 600
BfaI	CTAG	2 cut(s)	768, 985
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	111
BisI	GCNGC	3 cut(s)	53, 364, 929
BlpI	GCTNAGC	1 cut(s)	932
BlsI	GCNGC	3 cut(s)	54, 365, 930
BmcAI	AGTACT	2 cut(s)	829, 983
Bme1390I	CCNGG	2 cut(s)	754, 898
Bme18I	GGWCC	3 cut(s)	176, 565, 776
BmgT120I	GGNCC	4 cut(s)	109, 176, 565, 776
BmiI	GGNNCC	4 cut(s)	111, 177, 192, 221
BmrFI	CCNGG	2 cut(s)	754, 898
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	115
Bpu1102I	GCTNAGC	1 cut(s)	932
BpuMI	CCSGG	1 cut(s)	898
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	5 cut(s)	105, 113, 223, 450, 753
Bse1I	ACTGG	2 cut(s)	290, 568
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	936
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	5 cut(s)	105, 113, 223, 450, 753
BseGI	GGATG	2 cut(s)	429, 781
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	4 cut(s)	264, 815, 824, 923
BseNI	ACTGG	2 cut(s)	290, 568
BseSI	GKGCMC	2 cut(s)	222, 875
BseXI	GCAGC	1 cut(s)	915
BsgI	GTGCAG	1 cut(s)	512
Bsh1236I	CGCG	2 cut(s)	366, 797
BshFI	GGCC	3 cut(s)	110, 303, 528
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	803
BsiSI	CCGG	1 cut(s)	898
BslFI	GGGAC	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	279, 600
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	110, 303, 528
Bso31I	GGTCTC	1 cut(s)	600
Bsp1286I	GDGCHC	3 cut(s)	222, 803, 875
Bsp143I	GATC	4 cut(s)	253, 505, 581, 631
Bsp1720I	GCTNAGC	1 cut(s)	932
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	4 cut(s)	53, 364, 513, 774
BspANI	GGCC	3 cut(s)	110, 303, 528
BspCNI	CTCAG	4 cut(s)	263, 816, 825, 924
BspFNI	CGCG	2 cut(s)	366, 797
BspLI	GGNNCC	4 cut(s)	111, 177, 192, 221
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	3 cut(s)	248, 500, 589
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	936
BsrI	ACTGG	2 cut(s)	290, 568
BssECI	CCNNGG	5 cut(s)	105, 113, 223, 450, 753
BssMI	GATC	4 cut(s)	253, 505, 581, 631
BssT1I	CCWWGG	2 cut(s)	105, 223
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	4 cut(s)	454, 748, 814, 948
Bst6I	CTCTTC	2 cut(s)	387, 443
BstAPI	GCANNNNNTGC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	5 cut(s)	57, 250, 824, 833, 932
BstDSI	CCRYGG	2 cut(s)	105, 450
BstF5I	GGATG	2 cut(s)	429, 781
BstFNI	CGCG	2 cut(s)	366, 797
BstKTI	GATC	4 cut(s)	256, 508, 584, 634
BstMAI	GTCTC	2 cut(s)	279, 600
BstMBI	GATC	4 cut(s)	253, 505, 581, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 697
BstNI	CCWGG	1 cut(s)	754
BstSCI	CCNGG	2 cut(s)	752, 896
BstSLI	GKGCMC	2 cut(s)	222, 875
BstUI	CGCG	2 cut(s)	366, 797
BstV1I	GCAGC	1 cut(s)	915
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	110, 303, 528
BtgI	CCRYGG	2 cut(s)	105, 450
BtsCI	GGATG	2 cut(s)	429, 781
BtsI	GCAGTG	1 cut(s)	593
BtsIMutI	CAGTG	2 cut(s)	575, 593
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	799
Cfr13I	GGNCC	4 cut(s)	109, 176, 565, 776
Csp6I	GTAC	3 cut(s)	793, 828, 982
CviAII	CATG	7 cut(s)	10, 73, 106, 160, 299, 346, 426
CviQI	GTAC	3 cut(s)	793, 828, 982
DdeI	CTNAG	5 cut(s)	57, 250, 824, 833, 932
DpnI	GATC	4 cut(s)	255, 507, 583, 633
DpnII	GATC	4 cut(s)	253, 505, 581, 631
EaeI	YGGCCR	2 cut(s)	301, 526
Eam1104I	CTCTTC	2 cut(s)	387, 443
EarI	CTCTTC	2 cut(s)	387, 443
EciI	GGCGGA	1 cut(s)	789
Eco130I	CCWWGG	2 cut(s)	105, 223
Eco31I	GGTCTC	1 cut(s)	600
Eco47I	GGWCC	3 cut(s)	176, 565, 776
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRI	GAATTC	2 cut(s)	309, 733
EcoRII	CCWGG	1 cut(s)	752
EcoT14I	CCWWGG	2 cut(s)	105, 223
EcoT22I	ATGCAT	1 cut(s)	431
ErhI	CCWWGG	2 cut(s)	105, 223
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	7 cut(s)	13, 76, 109, 163, 302, 349, 429
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	7 cut(s)	9, 72, 105, 159, 298, 345, 425
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	3 cut(s)	53, 364, 929
FokI	GGATG	2 cut(s)	416, 768
Fsp4HI	GCNGC	3 cut(s)	53, 364, 929
FspBI	CTAG	2 cut(s)	768, 985
GluI	GCNGC	3 cut(s)	53, 364, 929
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	110, 303, 528
HapII	CCGG	1 cut(s)	898
Hin1II	CATG	7 cut(s)	13, 76, 109, 163, 302, 349, 429
HinfI	GANTC	2 cut(s)	269, 422
HpaII	CCGG	1 cut(s)	898
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	247, 343, 457
Hpy188I	TCNGA	9 cut(s)	117, 147, 253, 321, 421, 631, 726, 825, 834
Hpy188III	TCNNGA	4 cut(s)	94, 166, 386, 655
Hpy8I	GTNNAC	3 cut(s)	247, 343, 457
HpyAV	CCTTC	2 cut(s)	832, 861
HpyCH4III	ACNGT	4 cut(s)	454, 748, 814, 948
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	6 cut(s)	429, 493, 666, 683, 941, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 697
HpyF3I	CTNAG	5 cut(s)	57, 250, 824, 833, 932
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	7 cut(s)	13, 76, 109, 163, 302, 349, 429
Kzo9I	GATC	4 cut(s)	253, 505, 581, 631
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	915
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	2 cut(s)	768, 985
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	3 cut(s)	748, 808, 842
MalI	GATC	4 cut(s)	255, 507, 583, 633
MboI	GATC	4 cut(s)	253, 505, 581, 631
MboII	GAAGA	3 cut(s)	318, 374, 430
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	3 cut(s)	222, 803, 875
MluCI	AATT	8 cut(s)	32, 86, 309, 369, 442, 733, 913, 956
MnlI	CCTC	9 cut(s)	31, 76, 123, 446, 476, 561, 567, 789, 828
Mph1103I	ATGCAT	1 cut(s)	431
MseI	TTAA	1 cut(s)	950
MspI	CCGG	1 cut(s)	898
MspR9I	CCNGG	2 cut(s)	754, 898
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	754
MvnI	CGCG	2 cut(s)	366, 797
MwoI	GCNNNNNNNGC	2 cut(s)	107, 697
NciI	CCSGG	1 cut(s)	898
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	4 cut(s)	253, 505, 581, 631
NlaIII	CATG	7 cut(s)	13, 76, 109, 163, 302, 349, 429
NlaIV	GGNNCC	4 cut(s)	111, 177, 192, 221
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	2 cut(s)	748, 808
NsiI	ATGCAT	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	269, 422
PkrI	GCNGC	3 cut(s)	54, 365, 930
PpuMI	RGGWCCY	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	264
Psp1406I	AACGTT	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	752
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	4 cut(s)	111, 177, 192, 221
PspPI	GGNCC	4 cut(s)	109, 176, 565, 776
PspPPI	RGGWCCY	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	3 cut(s)	794, 829, 983
RsaNI	GTAC	3 cut(s)	793, 828, 982
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	950
SatI	GCNGC	3 cut(s)	53, 364, 929
Sau3AI	GATC	4 cut(s)	253, 505, 581, 631
Sau96I	GGNCC	4 cut(s)	109, 176, 565, 776
ScaI	AGTACT	2 cut(s)	829, 983
ScrFI	CCNGG	2 cut(s)	754, 898
SduI	GDGCHC	3 cut(s)	222, 803, 875
SfaNI	GCATC	1 cut(s)	438
SinI	GGWCC	3 cut(s)	176, 565, 776
Sse9I	AATT	8 cut(s)	32, 86, 309, 369, 442, 733, 913, 956
SsiI	CCGC	4 cut(s)	53, 364, 513, 774
SspMI	CTAG	2 cut(s)	768, 985
StyD4I	CCNGG	2 cut(s)	752, 896
StyI	CCWWGG	2 cut(s)	105, 223
TaaI	ACNGT	4 cut(s)	454, 748, 814, 948
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	2 cut(s)	387, 789
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	8 cut(s)	32, 86, 309, 369, 442, 733, 913, 956
TatI	WGTACW	2 cut(s)	827, 981
TauI	GCSGC	2 cut(s)	55, 366
TfiI	GAWTC	2 cut(s)	269, 422
Tru1I	TTAA	1 cut(s)	950
Tru9I	TTAA	1 cut(s)	950
TscAI	CASTG	2 cut(s)	575, 593
TseFI	GTSAC	2 cut(s)	748, 808
TseI	GCWGC	1 cut(s)	928
Tsp45I	GTSAC	2 cut(s)	748, 808
TspDTI	ATGAA	7 cut(s)	11, 148, 173, 282, 287, 552, 725
TspGWI	ACGGA	2 cut(s)	120, 246
TspRI	CASTG	2 cut(s)	575, 593
VpaK11BI	GGWCC	3 cut(s)	176, 565, 776
XapI	RAATTY	3 cut(s)	309, 733, 913
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	2 cut(s)	768, 985
ZrmI	AGTACT	2 cut(s)	829, 983
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.