Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001447

Physical Location & Seq

Genomic Coordinates Forward (+)

45047094 .. 45047718

Gene Structure 625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0277900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGATGTTAGTGTGGGACTTGTGTCAAGACTGCAGGAATTTAGATTCCATAATTTGAAATCGTCCCCGCCTAAAAACAGAGGCAGGGTGGTGTGGAGAGCTCCTCCGATGGGCTTGGTGAAGATCAATGTTGATGGGGCATTCCATCATGTATCTCAGAATGGGGGATTGGGGTTTGTCTTCAGGGATGAGGATGGTACCATGCTGGGGGGTGGTGCTTGTCGATTGAGTGGGTTGATATCCCCGGAACACGCTGAAATCTTGGCATGCAAGGTGGCTTTGGAGTTTGCGGTGGAGCATGGCTTTGGGCCAGTTATGCTGGAGACTGATGCAATGGAGGTTCAACGTCAACTCTCAGCTTCTGATGCTGTTAATACATCATTGCTTGGCAGAATATATGAAGATGTTAGGTTGCTGCTGGAGACTCAGAATGTCTTACATGTGAGTCACATAGGTAGGCATGGAAATATGGTGGCCCATCTGCTAGCTCGCCATGCTTGTTCTCTAACAGAGAATGAATTTTATTTTTCAGTTCCCGATGTTTTACAAGCTGTAATTGCAGCTGATATTTGTGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

193

Amino Acids

21.05

Weight (kDa)

6.03

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	43 - 166	7.3e-26	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68390
fragaria_vesca	FvH4_4g26971 FvH4_4g26972 FvH4_4g26973
malus_domestica	MD13G1036900.v1.1 MD13G1037100.v1.1 MD13G1037500.v1.1 MD13G1038500.v1.1 MD13G1038600.v1.1 MD13G1038700.v1.1 MD13G1038800.v1.1 MD16G1014100.v1.1
prunus_persica	Prupe.1G314600_v2.0.a1 Prupe.1G314600_v2.0.a1 Prupe.1G314700_v2.0.a1 Prupe.1G314800_v2.0.a1
pyrus_communis	pycom13g03350 pycom16g03430
rosa_chinensis	RchiOBHm_Chr4g0434731 RchiOBHm_Chr4g0434741 RchiOBHm_Chr4g0434751
rosa_laevigata	RLG00000006652 RLG00000006653 RLG00000006654
rosa_multiflora	Rmu_sc0007855.1_g000002 Rmu_sc0017904.1_g000004 Rmu_sc0017904.1_g000005 Rmu_sc0017904.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375940 Rroxscaffold_5G00375950 Rroxscaffold_5G00375960
rosa_rugosa	Rorug04G0277900 Rorug04G0278000 Rorug04G0278100
rosa_samantha	Rh4AG334300 Rh4AG334400 Rh4AG334500 Rh4BG342800 Rh4BG343000 Rh4BG343100 Rh4CG357200 Rh4CG357400 Rh4CG357500 Rh4DG336600 Rh4DG336700 Rh4DG336800
rosa_wichuraiana	Rw4G028990 Rw4G029000 Rw4G029020 Rw4G029030 Rw4G029160 Rw4G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AciI	CCGC	2 cut(s)	68, 290
AcsI	RAATTY	2 cut(s)	38, 518
AcuI	CTGAAG	1 cut(s)	166
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	110, 207
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	58, 344
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	5 cut(s)	101, 359, 488, 551, 563
AluI	AGCT	5 cut(s)	101, 359, 488, 551, 563
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	317, 416
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	2 cut(s)	308, 474
ApeKI	GCWGC	2 cut(s)	415, 560
ApoI	RAATTY	2 cut(s)	38, 518
Asp718I	GGTACC	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	308, 475
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	130
AsuNHI	GCTAGC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	402, 572
BccI	CCATC	5 cut(s)	103, 128, 153, 188, 486
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	317, 416
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	416, 561
BlsI	GCNGC	2 cut(s)	417, 562
Bme1390I	CCNGG	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	308, 475
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	2 cut(s)	319, 355
BmtI	GCTAGC	1 cut(s)	488
BoxI	GACNNNNGTC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	172
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
BpmI	CTGGAG	2 cut(s)	341, 440
BpuMI	CCSGG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 207
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	2 cut(s)	339, 380
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	3 cut(s)	10, 193, 199
BseLI	CCNNNNNNNGG	2 cut(s)	110, 207
BseMI	GCAATG	2 cut(s)	339, 380
BseMII	CTCAG	3 cut(s)	170, 369, 440
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	402, 572
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	2 cut(s)	310, 476
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	2 cut(s)	30, 49
BslI	CCNNNNNNNGG	2 cut(s)	110, 207
BsmAI	GTCTC	2 cut(s)	317, 416
BsmFI	GGGAC	2 cut(s)	30, 49
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	310, 476
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	2 cut(s)	68, 290
BspANI	GGCC	2 cut(s)	310, 476
BspCNI	CTCAG	3 cut(s)	169, 368, 439
BspLI	GGNNCC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	36
BspOI	GCTAGC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	339, 380
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	268, 486, 490
BstDEI	CTNAG	3 cut(s)	156, 355, 426
BstF5I	GGATG	3 cut(s)	10, 193, 199
BstKTI	GATC	1 cut(s)	126
BstMAI	GTCTC	2 cut(s)	317, 416
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	4 cut(s)	316, 365, 494, 557
BstNSI	RCATGY	2 cut(s)	270, 443
BstPAI	GACNNNNGTC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	402, 572
BstV2I	GAAGAC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	310, 476
BtsCI	GGATG	3 cut(s)	10, 193, 199
Cac8I	GCNNGC	3 cut(s)	268, 486, 490
CaiI	CAGNNNCTG	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	308, 475
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	7 cut(s)	149, 202, 267, 299, 440, 461, 494
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	3 cut(s)	156, 355, 426
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	7 cut(s)	152, 205, 270, 302, 443, 464, 497
FaqI	GGGAC	2 cut(s)	30, 49
FatI	CATG	7 cut(s)	148, 201, 266, 298, 439, 460, 493
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	416, 561
FokI	GGATG	3 cut(s)	17, 200, 206
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	416, 561
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	2 cut(s)	416, 561
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	2 cut(s)	341, 440
HaeIII	GGCC	2 cut(s)	310, 476
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	7 cut(s)	152, 205, 270, 302, 443, 464, 497
HincII	GTYRAC	1 cut(s)	350
HindII	GTYRAC	1 cut(s)	350
HinfI	GANTC	3 cut(s)	45, 424, 445
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	4 cut(s)	108, 159, 364, 429
Hpy188III	TCNNGA	2 cut(s)	27, 536
Hpy8I	GTNNAC	1 cut(s)	350
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	34, 270, 332, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	316, 365, 494, 557
HpyF3I	CTNAG	3 cut(s)	156, 355, 426
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	7 cut(s)	152, 205, 270, 302, 443, 464, 497
KpnI	GGTACC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	106, 295
LpnPI	CCDG	8 cut(s)	20, 70, 169, 191, 258, 305, 324, 404
Lsp1109I	GCAGC	2 cut(s)	402, 572
LweI	GCATC	2 cut(s)	319, 355
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	3 cut(s)	133, 172, 413
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	4 cut(s)	38, 52, 518, 555
MlyI	GAGTC	2 cut(s)	418, 454
MnlI	CCTC	4 cut(s)	74, 114, 184, 331
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	140
MwoI	GCNNNNNNNGC	4 cut(s)	316, 365, 494, 557
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	1 cut(s)	123
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	7 cut(s)	152, 205, 270, 302, 443, 464, 497
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	2 cut(s)	270, 443
PaeI	GCATGC	1 cut(s)	270
PciI	ACATGT	1 cut(s)	439
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	417, 562
PleI	GAGTC	2 cut(s)	418, 453
PpsI	GAGTC	2 cut(s)	418, 453
PscI	ACATGT	1 cut(s)	439
PshAI	GACNNNNGTC	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	308, 475
PstI	CTGCAG	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	416, 561
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	2 cut(s)	308, 475
SchI	GAGTC	2 cut(s)	418, 454
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	103
SfaNI	GCATC	2 cut(s)	319, 355
SfcI	CTRYAG	1 cut(s)	32
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	4 cut(s)	38, 52, 518, 555
SsiI	CCGC	2 cut(s)	68, 290
SspMI	CTAG	1 cut(s)	485
SstI	GAGCTC	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	223
TasI	AATT	4 cut(s)	38, 52, 518, 555
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	415, 560
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	414, 531
XapI	RAATTY	2 cut(s)	38, 518
XceI	RCATGY	2 cut(s)	270, 443
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.