Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001447

Physical Location & Seq

Genomic Coordinates Reverse (-)

2567280 .. 2568342

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1037100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCCAAATGCAACCTCCCCAACAACATCTGTTTCGTCAAGTCCTCCGCGGACAGGGTTGAAGGATTATCTGAAGCCACCGAACGCATTTCACGACATGAACAATGCAGAACTGCTGTGGAGAGCTTCTATAACTCCGCAGATTCCTGAATATCCATTCCATTTTGTTCCAAAAGTTGCTTTCATGTTCTTGACAAAGGGCCCTGTTGTTTTGGCACCACTGTGGGAGAAGTTCTTTGCCGGGCATCAAGGTTTGTACTCAATTTATGTGCACTCAAGTCCGTCCTACAATCACTCATTGTACACCGAAACCCCAGTTTTTGGTGGCCGGCGAATTCCAAGTCAGGTGGCTGCCAATTGTTCTCACTATTTTCTGTTCAACAACATGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

131

Amino Acids

14.68

Weight (kDa)

9.1

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	59 - 117	1.5e-12	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68390
fragaria_vesca	FvH4_4g26971 FvH4_4g26972 FvH4_4g26973
malus_domestica	MD13G1036900.v1.1 MD13G1037100.v1.1 MD13G1037500.v1.1 MD13G1038500.v1.1 MD13G1038600.v1.1 MD13G1038700.v1.1 MD13G1038800.v1.1 MD16G1014100.v1.1
prunus_persica	Prupe.1G314600_v2.0.a1 Prupe.1G314600_v2.0.a1 Prupe.1G314700_v2.0.a1 Prupe.1G314800_v2.0.a1
pyrus_communis	pycom13g03350 pycom16g03430
rosa_chinensis	RchiOBHm_Chr4g0434731 RchiOBHm_Chr4g0434741 RchiOBHm_Chr4g0434751
rosa_laevigata	RLG00000006652 RLG00000006653 RLG00000006654
rosa_multiflora	Rmu_sc0007855.1_g000002 Rmu_sc0017904.1_g000004 Rmu_sc0017904.1_g000005 Rmu_sc0017904.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375940 Rroxscaffold_5G00375950 Rroxscaffold_5G00375960
rosa_rugosa	Rorug04G0277900 Rorug04G0278000 Rorug04G0278100
rosa_samantha	Rh4AG334300 Rh4AG334400 Rh4AG334500 Rh4BG342800 Rh4BG343000 Rh4BG343100 Rh4CG357200 Rh4CG357400 Rh4CG357500 Rh4DG336600 Rh4DG336700 Rh4DG336800
rosa_wichuraiana	Rw4G028990 Rw4G029000 Rw4G029020 Rw4G029030 Rw4G029160 Rw4G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccII	CGCG	1 cut(s)	49
AciI	CCGC	3 cut(s)	47, 49, 137
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	3 cut(s)	257, 302, 389
AfiI	CCNNNNNNNGG	2 cut(s)	53, 320
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	61, 379
AleI	CACNNNNGTG	1 cut(s)	220
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw21I	GWGCWC	1 cut(s)	273
Alw44I	GTGCAC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	199, 325
ApaI	GGGCCC	1 cut(s)	203
ApaLI	GTGCAC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AspS9I	GGNCC	2 cut(s)	199, 200
AsuC2I	CCSGG	1 cut(s)	241
BaeGI	GKGCMC	2 cut(s)	203, 273
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	241
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	199, 200
BmiI	GGNNCC	2 cut(s)	201, 216
BmrFI	CCNGG	1 cut(s)	241
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 320
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	53, 320
BseNI	ACTGG	1 cut(s)	314
BseSI	GKGCMC	2 cut(s)	203, 273
BseXI	GCAGC	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	201, 327
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	240, 328
BslI	CCNNNNNNNGG	2 cut(s)	53, 320
BsnI	GGCC	2 cut(s)	201, 327
Bsp120I	GGGCCC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	203, 273
Bsp1407I	TGTACA	1 cut(s)	300
BspACI	CCGC	3 cut(s)	47, 49, 137
BspANI	GGCC	2 cut(s)	201, 327
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	201, 216
BspT107I	GGYRCC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	329
BstDSI	CCRYGG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	239
BstSLI	GKGCMC	2 cut(s)	203, 273
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	201, 327
BtgI	CCRYGG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	199, 200
Cfr42I	CCGCGG	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	256, 301, 388
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	3 cut(s)	97, 184, 385
CviJI	RGCY	5 cut(s)	76, 125, 201, 327, 350
CviKI_1	RGCY	5 cut(s)	76, 125, 201, 327, 350
CviQI	GTAC	3 cut(s)	256, 301, 388
EaeI	YGGCCR	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	92
EcoO109I	RGGNCCY	2 cut(s)	199, 200
EcoRI	GAATTC	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	3 cut(s)	100, 187, 388
FaiI	YATR	5 cut(s)	98, 131, 185, 267, 386
FatI	CATG	3 cut(s)	96, 183, 384
Fnu4HI	GCNGC	1 cut(s)	351
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	201, 327
HapII	CCGG	2 cut(s)	240, 328
Hin1II	CATG	3 cut(s)	100, 187, 388
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	2 cut(s)	240, 328
Hpy166II	GTNNAC	2 cut(s)	271, 303
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	92, 146, 190
Hpy8I	GTNNAC	2 cut(s)	271, 303
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	11, 107, 271
Hsp92II	CATG	3 cut(s)	100, 187, 388
KroI	GCCGGC	1 cut(s)	327
KroNI	GCCGGC	1 cut(s)	329
KspI	CCGCGG	1 cut(s)	50
LpnPI	CCDG	7 cut(s)	39, 159, 216, 253, 327, 329, 341
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	253
MfeI	CAATTG	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	203, 273
MluCI	AATT	3 cut(s)	261, 333, 355
MnlI	CCTC	2 cut(s)	25, 54
MroNI	GCCGGC	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	2 cut(s)	240, 328
MspR9I	CCNGG	1 cut(s)	241
MunI	CAATTG	1 cut(s)	355
MvnI	CGCG	1 cut(s)	49
NaeI	GCCGGC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	241
NgoMIV	GCCGGC	1 cut(s)	327
NlaIII	CATG	3 cut(s)	100, 187, 388
NlaIV	GGNNCC	2 cut(s)	201, 216
NspI	RCATGY	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	220
PciI	ACATGT	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	352
PscI	ACATGT	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	201, 216
PspOMI	GGGCCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	199, 200
RsaI	GTAC	3 cut(s)	257, 302, 389
RsaNI	GTAC	3 cut(s)	256, 301, 388
RseI	CAYNNNNRTG	1 cut(s)	220
SacII	CCGCGG	1 cut(s)	50
SatI	GCNGC	1 cut(s)	351
Sau96I	GGNCC	2 cut(s)	199, 200
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	2 cut(s)	203, 273
SetI	ASST	4 cut(s)	17, 127, 253, 348
SfaNI	GCATC	1 cut(s)	253
Sfr303I	CCGCGG	1 cut(s)	50
SgrBI	CCGCGG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	3 cut(s)	261, 333, 355
SsiI	CCGC	3 cut(s)	47, 49, 137
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	222
TasI	AATT	3 cut(s)	261, 333, 355
TatI	WGTACW	3 cut(s)	255, 300, 387
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	113, 172
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	320
VneI	GTGCAC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.