Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017904.1

Orthogroup ID

OG0001447

Physical Location & Seq

Genomic Coordinates Forward (+)

16018 .. 17056

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017904.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgagccatgttcgtataggactaaaagcatatctggagccgcctaatgttacgcacgacatgaatgatgaagaattgctatggagagcttcgacggctcctcggattgctgaatatccattccatcgagtcccaaaagttgctttcatgttcttgacaaagggacctgtacatttcgccccattgtgggagaagttcttcaaagggcatcaaggcttgtactcaatttatgttcactcagatccatcttacaatgcatcatcacacccagaaagtcctgtttttcaaggccgaggaattccaagtcagaaagtaaaatgggcacaggtgaacatgattgaggctgaaagccgcctaattgcgaatgctcttctcgatatctcaaaccagcgcttcgttctcctctcggaagcatgcattcccctatacaacttctccactatctacacttacctcctaaactcccaagaaacttttgtggaggtctatgatgatccaagttcagttggacgcggccgatataattcaagttactacccaataatcatattggatcagtggaggaaagggtcacagtgggttgaaattgatagagacattgccattgaagttgtctcggatcggacatacttaccagccttccggttgggcaaccgctcttgttttgctgatgaacattacttgccaacatttgtgaacctaaaattttcggcaaagaattcaaacaggagtgtcacctgggttgattggtctacgcgtggcccgcaccctgtcgagtacaatagcacatcggctgagcttctgaacaccctgcgcaatggtaatggtcagagatgtttatataatcaaaggagaagcaatgtttgtttcttattcgccaggaaattccggccttctgctttggatagccttctcaggcttgcccccaagatcatgcacttcaacacagattcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

318

Amino Acids

36.69

Weight (kDa)

8.93

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68390
fragaria_vesca	FvH4_4g26971 FvH4_4g26972 FvH4_4g26973
malus_domestica	MD13G1036900.v1.1 MD13G1037100.v1.1 MD13G1037500.v1.1 MD13G1038500.v1.1 MD13G1038600.v1.1 MD13G1038700.v1.1 MD13G1038800.v1.1 MD16G1014100.v1.1
prunus_persica	Prupe.1G314600_v2.0.a1 Prupe.1G314600_v2.0.a1 Prupe.1G314700_v2.0.a1 Prupe.1G314800_v2.0.a1
pyrus_communis	pycom13g03350 pycom16g03430
rosa_chinensis	RchiOBHm_Chr4g0434731 RchiOBHm_Chr4g0434741 RchiOBHm_Chr4g0434751
rosa_laevigata	RLG00000006652 RLG00000006653 RLG00000006654
rosa_multiflora	Rmu_sc0007855.1_g000002 Rmu_sc0017904.1_g000004 Rmu_sc0017904.1_g000005 Rmu_sc0017904.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375940 Rroxscaffold_5G00375950 Rroxscaffold_5G00375960
rosa_rugosa	Rorug04G0277900 Rorug04G0278000 Rorug04G0278100
rosa_samantha	Rh4AG334300 Rh4AG334400 Rh4AG334500 Rh4BG342800 Rh4BG343000 Rh4BG343100 Rh4CG357200 Rh4CG357400 Rh4CG357500 Rh4DG336600 Rh4DG336700 Rh4DG336800
rosa_wichuraiana	Rw4G028990 Rw4G029000 Rw4G029020 Rw4G029030 Rw4G029160 Rw4G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	815
AccBSI	CCGCTC	1 cut(s)	657
AccI	GTMKAC	1 cut(s)	752
AccII	CGCG	2 cut(s)	513, 757
AciI	CCGC	5 cut(s)	41, 352, 513, 655, 764
AclWI	GGATC	4 cut(s)	236, 488, 561, 627
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	4 cut(s)	297, 704, 718, 884
AfaI	GTAC	3 cut(s)	171, 221, 779
AfeI	AGCGCT	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	186, 187
AflIII	ACRYGT	1 cut(s)	755
AgsI	TTSAA	7 cut(s)	202, 287, 528, 584, 608, 723, 943
AjnI	CCWGG	2 cut(s)	737, 878
AluBI	AGCT	2 cut(s)	89, 799
AluI	AGCT	2 cut(s)	89, 799
Alw26I	GTCTC	2 cut(s)	588, 619
AlwI	GGATC	4 cut(s)	236, 488, 561, 627
Aor51HI	AGCGCT	1 cut(s)	392
AoxI	GGCC	4 cut(s)	289, 514, 760, 890
ApoI	RAATTY	4 cut(s)	297, 704, 718, 884
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	393, 816
AspS9I	GGNCC	2 cut(s)	164, 761
AsuHPI	GGTGA	2 cut(s)	340, 727
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	325
BccI	CCATC	2 cut(s)	132, 253
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	2 cut(s)	739, 880
BcoDI	GTCTC	2 cut(s)	588, 619
BfoI	RGCGCY	1 cut(s)	394
BisI	GCNGC	3 cut(s)	41, 352, 514
BlpI	GCTNAGC	1 cut(s)	795
BlsI	GCNGC	3 cut(s)	42, 353, 515
Bme1390I	CCNGG	2 cut(s)	739, 880
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 761
BmiI	GGNNCC	3 cut(s)	39, 99, 165
BmrFI	CCNGG	2 cut(s)	739, 880
BmsI	GCATC	2 cut(s)	217, 266
BpmI	CTGGAG	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	795
BsaJI	CCNNGG	3 cut(s)	101, 292, 738
BsaWI	WCCGGW	1 cut(s)	642
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 187
Bse3DI	GCAATG	3 cut(s)	597, 823, 865
BseBI	CCWGG	2 cut(s)	739, 880
BseDI	CCNNGG	3 cut(s)	101, 292, 738
BseLI	CCNNNNNNNGG	2 cut(s)	186, 187
BseMI	GCAATG	3 cut(s)	597, 823, 865
BseMII	CTCAG	3 cut(s)	252, 786, 928
BseRI	GAGGAG	2 cut(s)	90, 392
BseSI	GKGCMC	1 cut(s)	325
BseX3I	CGGCCG	1 cut(s)	514
Bsh1236I	CGCG	2 cut(s)	513, 757
Bsh1285I	CGRYCG	1 cut(s)	517
BshFI	GGCC	4 cut(s)	291, 516, 762, 892
BsiEI	CGRYCG	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	643, 889
BslFI	GGGAC	2 cut(s)	116, 177
BslI	CCNNNNNNNGG	2 cut(s)	186, 187
BsmAI	GTCTC	2 cut(s)	588, 619
BsmFI	GGGAC	2 cut(s)	116, 177
BsmI	GAATGC	2 cut(s)	370, 417
BsnI	GGCC	4 cut(s)	291, 516, 762, 892
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	5 cut(s)	241, 493, 553, 619, 930
Bsp1720I	GCTNAGC	1 cut(s)	795
BspACI	CCGC	5 cut(s)	41, 352, 513, 655, 764
BspANI	GGCC	4 cut(s)	291, 516, 762, 892
BspCNI	CTCAG	3 cut(s)	251, 787, 927
BspFNI	CGCG	2 cut(s)	513, 757
BspLI	GGNNCC	3 cut(s)	39, 99, 165
BspPI	GGATC	4 cut(s)	236, 488, 561, 627
BspQI	GCTCTTC	1 cut(s)	375
BsrBI	CCGCTC	1 cut(s)	657
BsrDI	GCAATG	3 cut(s)	597, 823, 865
BsrGI	TGTACA	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	101, 292, 738
BssMI	GATC	5 cut(s)	241, 493, 553, 619, 930
Bst2UI	CCWGG	2 cut(s)	739, 880
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	1 cut(s)	375
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	415, 764, 921
BstDEI	CTNAG	3 cut(s)	238, 795, 914
BstFNI	CGCG	2 cut(s)	513, 757
BstH2I	RGCGCY	1 cut(s)	394
BstHHI	GCGC	2 cut(s)	393, 816
BstKTI	GATC	5 cut(s)	244, 496, 556, 622, 933
BstMAI	GTCTC	2 cut(s)	588, 619
BstMBI	GATC	5 cut(s)	241, 493, 553, 619, 930
BstMCI	CGRYCG	1 cut(s)	517
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 763
BstNI	CCWGG	2 cut(s)	739, 880
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	2 cut(s)	737, 878
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	2 cut(s)	513, 757
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BstZI	CGGCCG	1 cut(s)	514
BsuRI	GGCC	4 cut(s)	291, 516, 762, 892
BtsIMutI	CAGTG	2 cut(s)	563, 581
Cac8I	GCNNGC	3 cut(s)	415, 764, 921
CfoI	GCGC	2 cut(s)	393, 816
Cfr13I	GGNCC	2 cut(s)	164, 761
CseI	GACGC	1 cut(s)	519
Csp6I	GTAC	3 cut(s)	170, 220, 778
CviAII	CATG	6 cut(s)	8, 61, 148, 334, 414, 934
CviQI	GTAC	3 cut(s)	170, 220, 778
DdeI	CTNAG	3 cut(s)	238, 795, 914
DpnI	GATC	5 cut(s)	243, 495, 555, 621, 932
DpnII	GATC	5 cut(s)	241, 493, 553, 619, 930
EaeI	YGGCCR	1 cut(s)	514
EagI	CGGCCG	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EclXI	CGGCCG	1 cut(s)	514
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	164
Eco47III	AGCGCT	1 cut(s)	392
Eco52I	CGGCCG	1 cut(s)	514
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRI	GAATTC	2 cut(s)	297, 718
EcoRII	CCWGG	2 cut(s)	737, 878
EcoRV	GATATC	1 cut(s)	379
EcoT22I	ATGCAT	2 cut(s)	259, 419
FaeI	CATG	6 cut(s)	11, 64, 151, 337, 417, 937
FaqI	GGGAC	2 cut(s)	116, 177
FatI	CATG	6 cut(s)	7, 60, 147, 333, 413, 933
FauI	CCCGC	1 cut(s)	771
FblI	GTMKAC	1 cut(s)	752
Fnu4HI	GCNGC	3 cut(s)	41, 352, 514
Fsp4HI	GCNGC	3 cut(s)	41, 352, 514
FspI	TGCGCA	1 cut(s)	815
GlaI	GCGC	2 cut(s)	392, 815
GluI	GCNGC	3 cut(s)	41, 352, 514
GsuI	CTGGAG	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	394
HaeIII	GGCC	4 cut(s)	291, 516, 762, 892
HapII	CCGG	2 cut(s)	643, 889
HgaI	GACGC	1 cut(s)	519
HhaI	GCGC	2 cut(s)	393, 816
Hin1II	CATG	6 cut(s)	11, 64, 151, 337, 417, 937
Hin6I	GCGC	2 cut(s)	391, 814
HinP1I	GCGC	2 cut(s)	391, 814
HinfI	GANTC	2 cut(s)	129, 950
HpaII	CCGG	2 cut(s)	643, 889
HphI	GGTGA	2 cut(s)	340, 727
Hpy166II	GTNNAC	4 cut(s)	235, 331, 697, 753
Hpy188I	TCNGA	8 cut(s)	105, 241, 309, 409, 619, 624, 804, 831
Hpy188III	TCNNGA	3 cut(s)	35, 154, 374
Hpy8I	GTNNAC	4 cut(s)	235, 331, 697, 753
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	649, 903, 920
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4V	TGCA	3 cut(s)	257, 417, 937
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 763
HpyF3I	CTNAG	3 cut(s)	238, 795, 914
Hsp92II	CATG	6 cut(s)	11, 64, 151, 337, 417, 937
HspAI	GCGC	2 cut(s)	391, 814
Kzo9I	GATC	5 cut(s)	241, 493, 553, 619, 930
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	37, 103
LweI	GCATC	2 cut(s)	217, 266
MaeIII	GTNAC	4 cut(s)	49, 530, 570, 733
MalI	GATC	5 cut(s)	243, 495, 555, 621, 932
MbiI	CCGCTC	1 cut(s)	657
MboI	GATC	5 cut(s)	241, 493, 553, 619, 930
MboII	GAAGA	3 cut(s)	83, 190, 362
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	9 cut(s)	74, 225, 297, 357, 523, 585, 704, 718, 884
MluI	ACGCGT	1 cut(s)	755
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	7 cut(s)	111, 287, 334, 413, 464, 475, 555
Mph1103I	ATGCAT	2 cut(s)	259, 419
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	955
MspI	CCGG	2 cut(s)	643, 889
MspR9I	CCNGG	2 cut(s)	739, 880
Mva1269I	GAATGC	2 cut(s)	370, 417
MvaI	CCWGG	2 cut(s)	739, 880
MvnI	CGCG	2 cut(s)	513, 757
MwoI	GCNNNNNNNGC	2 cut(s)	95, 763
NdeII	GATC	5 cut(s)	241, 493, 553, 619, 930
NlaIII	CATG	6 cut(s)	11, 64, 151, 337, 417, 937
NlaIV	GGNNCC	3 cut(s)	39, 99, 165
NmeAIII	GCCGAG	1 cut(s)	317
NmuCI	GTSAC	2 cut(s)	570, 733
NsbI	TGCGCA	1 cut(s)	815
NsiI	ATGCAT	2 cut(s)	259, 419
NspI	RCATGY	1 cut(s)	417
PaeI	GCATGC	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	375
PctI	GAATGC	2 cut(s)	370, 417
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	950
PkrI	GCNGC	3 cut(s)	42, 353, 515
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	164
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	737, 878
PspGI	CCWGG	2 cut(s)	737, 878
PspN4I	GGNNCC	3 cut(s)	39, 99, 165
PspPI	GGNCC	2 cut(s)	164, 761
PspPPI	RGGWCCY	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	3 cut(s)	171, 221, 779
RsaNI	GTAC	3 cut(s)	170, 220, 778
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	955
SatI	GCNGC	3 cut(s)	41, 352, 514
Sau3AI	GATC	5 cut(s)	241, 493, 553, 619, 930
Sau96I	GGNCC	2 cut(s)	164, 761
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	2 cut(s)	739, 880
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	8 cut(s)	91, 169, 330, 456, 486, 702, 740, 801
SfaNI	GCATC	2 cut(s)	217, 266
SinI	GGWCC	1 cut(s)	164
SphI	GCATGC	1 cut(s)	417
Sse9I	AATT	9 cut(s)	74, 225, 297, 357, 523, 585, 704, 718, 884
SsiI	CCGC	5 cut(s)	41, 352, 513, 655, 764
StyD4I	CCNGG	2 cut(s)	737, 878
TaaI	ACNGT	1 cut(s)	576
TaqI	TCGA	4 cut(s)	92, 127, 375, 774
TasI	AATT	9 cut(s)	74, 225, 297, 357, 523, 585, 704, 718, 884
TatI	WGTACW	3 cut(s)	169, 219, 777
TauI	GCSGC	3 cut(s)	43, 354, 516
TfiI	GAWTC	1 cut(s)	950
Tru1I	TTAA	1 cut(s)	955
Tru9I	TTAA	1 cut(s)	955
TscAI	CASTG	2 cut(s)	563, 581
TseFI	GTSAC	2 cut(s)	570, 733
Tsp45I	GTSAC	2 cut(s)	570, 733
TspDTI	ATGAA	4 cut(s)	77, 84, 136, 687
TspRI	CASTG	2 cut(s)	563, 581
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	4 cut(s)	297, 704, 718, 884
XceI	RCATGY	1 cut(s)	417
XmiI	GTMKAC	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	197
Zsp2I	ATGCAT	2 cut(s)	259, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.