Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001077

Physical Location & Seq

Genomic Coordinates Forward (+)

1208355 .. 1209415

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01940.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTTAAACTGCCTTTTGAATTGCAGTTTGTTGGAAATGAGAAAGCCAAGAAGGAGCTTGGAGATGTCGATAACCTCACTGTGGAAAAGGTGGACAAGCTAGCTGAGGAATTTCTGGAGGATGTGAAGCAGGATTTGATAGAATCCAAAGGCTGGCCTGTAAACATGTCTTCTTACATTGTATCAAAAGCAGCTCTGAATGCTTATACAAGAATCTTGGCAAAGAAGTATCCCAAAATTGCTACCAACGCAGTAAGTCCTGGTTTTACAAAAACAGACATCAACCAAAATACTGGGACTAACACAATTGAAGAAGCTGCAGAAGGTCCTGTGAAGCTGGCTTTGATAGCTGACACTGGAATTTCTGGCCTCTACTTTGAACTGACTGAAGAGTCAACCTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

136

Amino Acids

14.92

Weight (kDa)

4.72

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	95 - 151	2.2e-07	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	100 - 144	7.1e-06	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001077)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01930 FvH4_5g01940 FvH4_5g01940
malus_domestica	MD06G1077500.v1.1 MD06G1077700.v1.1
prunus_persica	Prupe.5G095500_v2.0.a1
pyrus_communis	pycom06g07530 pycom06g07550
rosa_chinensis	RchiOBHm_Chr7g0198451 RchiOBHm_Chr7g0198511 RchiOBHm_Chr7g0198551 RchiOBHm_Chr7g0198571 RchiOBHm_Chr7g0211881 RchiOBHm_Chr7g0211891 RchiOBHm_Chr7g0211941 RchiOBHm_Chr7g0211971
rosa_laevigata	RLG00000002949 RLG00000002951 RLG00000002952 RLG00000003860 RLG00000003861 RLG00000003862 RLG00000003864 RLG00000003866
rosa_multiflora	Rmu_co8088652.1_g000001 Rmu_sc0001250.1_g000001 Rmu_sc0002122.1_g000007 Rmu_sc0004229.1_g000017 Rmu_sc0004229.1_g000022 Rmu_sc0007215.1_g000006 Rmu_sc0009005.1_g000002 Rmu_sc0017524.1_g000002 Rmu_sc0018807.1_g000004 Rmu_sc0018807.1_g000008 Rmu_sc0028304.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247250 Rroxscaffold_3G00247280 Rroxscaffold_3G00257670
rosa_rugosa	Rorug07G0048200 Rorug07G0048200 Rorug07G0048300 Rorug07G0129700 Rorug07G0129700
rosa_samantha	Rh7BG174800 Rh7BG175000 Rh7BG175200 Rh7BG256000 Rh7BG256400 Rh7CG181300 Rh7CG278500 Rh7CG278700 Rh7CG279100 Rh7DG173800 Rh7DG174200 Rh7DG269000 Rh7DG269300
rosa_wichuraiana	Rw7G015020 Rw7G015060 Rw7G022380 Rw7G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	391
AccB7I	CCANNNNNTGG	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	110, 360
AcuI	CTGAAG	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	82, 153
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	20, 311, 380, 404
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	7 cut(s)	58, 100, 104, 194, 317, 337, 350
AluI	AGCT	7 cut(s)	58, 100, 104, 194, 317, 337, 350
AoxI	GGCC	2 cut(s)	155, 367
ApeKI	GCWGC	2 cut(s)	191, 317
ApoI	RAATTY	2 cut(s)	110, 360
AspS9I	GGNCC	1 cut(s)	326
AsuNHI	GCTAGC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	203, 304
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	2 cut(s)	192, 318
BlsI	GCNGC	2 cut(s)	193, 319
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	303
BmtI	GCTAGC	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 153
Bse1I	ACTGG	2 cut(s)	298, 361
BseBI	CCWGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	82, 153
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	298, 361
BseXI	GCAGC	2 cut(s)	203, 304
BshFI	GGCC	2 cut(s)	157, 369
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	82, 153
BsmFI	GGGAC	1 cut(s)	310
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	157, 369
BspANI	GGCC	2 cut(s)	157, 369
BspCNI	CTCAG	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	322
BspOI	GCTAGC	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	298, 361
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	102, 155, 339
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 248, 347
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	203, 304
BstV2I	GAAGAC	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	293
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	157, 369
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	78, 354
Cac8I	GCNNGC	3 cut(s)	102, 155, 339
Cfr13I	GGNCC	1 cut(s)	326
CviAII	CATG	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	105
DraI	TTTAAA	1 cut(s)	7
DrdI	GACNNNNNNGTC	1 cut(s)	391
DseDI	GACNNNNNNGTC	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	167, 207
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	192, 318
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	192, 318
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	2 cut(s)	192, 318
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	157, 369
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	3 cut(s)	143, 213, 392
Hpy166II	GTNNAC	3 cut(s)	94, 163, 396
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	3 cut(s)	94, 163, 396
HpyAV	CCTTC	2 cut(s)	46, 317
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	25, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 248, 347
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	2 cut(s)	203, 304
MaeI	CTAG	1 cut(s)	101
MboII	GAAGA	3 cut(s)	162, 323, 401
MfeI	CAATTG	1 cut(s)	306
MluCI	AATT	5 cut(s)	20, 110, 237, 306, 360
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	4 cut(s)	86, 100, 112, 380
MseI	TTAA	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	261
MssI	GTTTAAAC	1 cut(s)	7
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	3 cut(s)	200, 248, 347
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	169
NspI	RCATGY	1 cut(s)	169
PciI	ACATGT	1 cut(s)	165
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	143, 213
PflMI	CCANNNNNTGG	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	193, 319
PleI	GAGTC	1 cut(s)	400
PmeI	GTTTAAAC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	326
PscI	ACATGT	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	326
PspPPI	RGGWCCY	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	192, 318
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	326
Sse9I	AATT	5 cut(s)	20, 110, 237, 306, 360
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	69
TasI	AATT	5 cut(s)	20, 110, 237, 306, 360
TfiI	GAWTC	2 cut(s)	143, 213
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	85, 361
TseI	GCWGC	2 cut(s)	191, 317
TspRI	CASTG	2 cut(s)	85, 361
Van91I	CCANNNNNTGG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	110, 360
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.