Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001077

Physical Location & Seq

Genomic Coordinates Forward (+)

10495897 .. 10497754

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G095500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAAGAAACAACAATCACTTTTGGGTCTAAGAGGATTGCAGTTGTAACTGGAGGCAACAAAGGGATTGGATTTGAGATAAGCAGGCAATTAGGTTCTAATGGAGTTGGAGTGATATTAACTGCAAGAGATGAGAAGAGGGGCACAGAAGCTGTTGAGAAGCTAAAGGCTTCTGGCTTCTCTGATGTGGTCTTTCATCAGCTGGATGTCACTGACCAAACTAGCATTGCTTCTCTGGCTGATTTTCTCCAAACTCAGTTTGGAAAGCTTGACATATTGGTCAATAATGCAGGAGTTATTGGATCTTTATTCCTCACTGATGACAAAGAGAAGTTGGCAATTAGGCCTGAGGATCTTATAGGTCCCAATGGTGTCAAGAACGAATATGTAAAGCAAACCTACGAGACAGCAGGGGATTGTTTCAAAACAAACTACTATGGAATTAAGCAGCTCACAAAAGCACTTATTCCACTTCTTCAAAAATCCGACTCGGCAAGGGTAGTCAATGTCTCCTCTGCATTGGGACAACTAAGGGTTATTCCAAATGAGGAAGCCAAGAAGGAGCTAGGAGACAGTGATAGCCTCACAGAAGAGAAAGTGGACAACTTAGTTGAGGGATTTTTGGAGGATGTGAAGCACAATTTGATTGAAGCCAAAAGCTGGCCTATTAATCAATCTGCCTACATTGTATCCAAAGCAGCTCTTAATGCTTATACCAGAGTCTTGGCTACAAAGTATCCTAGCATTGCCATTAACGCAGTCAGTCCTGGTTTTACCGCCACAGACATGAACAATTATACCGGTATCCTCACAGCTGAAGAAGCTGCTAAAGGTCCGGTGAAGGCGGCCTTGTTGCCGGATATTAGAGTTTCTGGCTGCTACTTTGAACAGACTGAATTGTCAACCTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

305

Amino Acids

32.94

Weight (kDa)

5.07

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001077)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01930 FvH4_5g01940 FvH4_5g01940
malus_domestica	MD06G1077500.v1.1 MD06G1077700.v1.1
prunus_persica	Prupe.5G095500_v2.0.a1
pyrus_communis	pycom06g07530 pycom06g07550
rosa_chinensis	RchiOBHm_Chr7g0198451 RchiOBHm_Chr7g0198511 RchiOBHm_Chr7g0198551 RchiOBHm_Chr7g0198571 RchiOBHm_Chr7g0211881 RchiOBHm_Chr7g0211891 RchiOBHm_Chr7g0211941 RchiOBHm_Chr7g0211971
rosa_laevigata	RLG00000002949 RLG00000002951 RLG00000002952 RLG00000003860 RLG00000003861 RLG00000003862 RLG00000003864 RLG00000003866
rosa_multiflora	Rmu_co8088652.1_g000001 Rmu_sc0001250.1_g000001 Rmu_sc0002122.1_g000007 Rmu_sc0004229.1_g000017 Rmu_sc0004229.1_g000022 Rmu_sc0007215.1_g000006 Rmu_sc0009005.1_g000002 Rmu_sc0017524.1_g000002 Rmu_sc0018807.1_g000004 Rmu_sc0018807.1_g000008 Rmu_sc0028304.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247250 Rroxscaffold_3G00247280 Rroxscaffold_3G00257670
rosa_rugosa	Rorug07G0048200 Rorug07G0048200 Rorug07G0048300 Rorug07G0129700 Rorug07G0129700
rosa_samantha	Rh7BG174800 Rh7BG175000 Rh7BG175200 Rh7BG256000 Rh7BG256400 Rh7CG181300 Rh7CG278500 Rh7CG278700 Rh7CG279100 Rh7DG173800 Rh7DG174200 Rh7DG269000 Rh7DG269300
rosa_wichuraiana	Rw7G015020 Rw7G015060 Rw7G022380 Rw7G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	278, 898
AccB7I	CCANNNNNTGG	1 cut(s)	660
AciI	CCGC	2 cut(s)	777, 845
AclWI	GGATC	2 cut(s)	310, 360
AcuI	CTGAAG	1 cut(s)	837
AfiI	CCNNNNNNNGG	1 cut(s)	660
AgeI	ACCGGT	1 cut(s)	800
AgsI	TTSAA	5 cut(s)	424, 479, 650, 887, 911
AjnI	CCWGG	1 cut(s)	766
Alw26I	GTCTC	3 cut(s)	398, 514, 564
AlwI	GGATC	2 cut(s)	310, 360
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	3 cut(s)	344, 662, 846
ApeKI	GCWGC	4 cut(s)	448, 698, 824, 876
AseI	ATTAAT	1 cut(s)	669
AsiGI	ACCGGT	1 cut(s)	800
AspS9I	GGNCC	2 cut(s)	362, 833
AsuHPI	GGTGA	1 cut(s)	850
AvaII	GGWCC	2 cut(s)	362, 833
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	146
BbvI	GCAGC	4 cut(s)	460, 710, 811, 863
BciT130I	CCWGG	1 cut(s)	768
BciVI	GTATCC	3 cut(s)	700, 747, 815
BcoDI	GTCTC	3 cut(s)	398, 514, 564
BfaI	CTAG	3 cut(s)	222, 566, 741
BfuI	GTATCC	3 cut(s)	700, 747, 815
BisI	GCNGC	5 cut(s)	449, 699, 825, 846, 877
BlsI	GCNGC	5 cut(s)	450, 700, 826, 847, 878
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	2 cut(s)	362, 833
BmgT120I	GGNCC	2 cut(s)	362, 833
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	768
BpmI	CTGGAG	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	800, 835
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse118I	RCCGGY	1 cut(s)	800
Bse1I	ACTGG	1 cut(s)	55
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	2 cut(s)	225, 744
BseBI	CCWGG	1 cut(s)	768
BseGI	GGATG	2 cut(s)	211, 634
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMI	GCAATG	2 cut(s)	225, 744
BseMII	CTCAG	2 cut(s)	269, 339
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	460, 710, 811, 863
BshFI	GGCC	3 cut(s)	346, 664, 848
BshTI	ACCGGT	1 cut(s)	800
BsiSI	CCGG	3 cut(s)	801, 836, 857
BslFI	GGGAC	2 cut(s)	348, 537
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	3 cut(s)	398, 514, 564
BsmFI	GGGAC	2 cut(s)	348, 537
BsnI	GGCC	3 cut(s)	346, 664, 848
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	302, 352
BspACI	CCGC	2 cut(s)	777, 845
BspANI	GGCC	3 cut(s)	346, 664, 848
BspCNI	CTCAG	2 cut(s)	268, 340
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	2 cut(s)	310, 360
BsrDI	GCAATG	2 cut(s)	225, 744
BsrFI	RCCGGY	1 cut(s)	800
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	800
BssMI	GATC	2 cut(s)	302, 352
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	1 cut(s)	575
Bst6I	CTCTTC	2 cut(s)	131, 585
BstC8I	GCNNGC	2 cut(s)	86, 662
BstDEI	CTNAG	5 cut(s)	30, 255, 348, 530, 607
BstF5I	GGATG	2 cut(s)	211, 634
BstKTI	GATC	2 cut(s)	305, 355
BstMAI	GTCTC	3 cut(s)	398, 514, 564
BstMBI	GATC	2 cut(s)	302, 352
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 707, 755, 821
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	766
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	4 cut(s)	460, 710, 811, 863
BstX2I	RGATCY	2 cut(s)	302, 352
BstXI	CCANNNNNNTGG	1 cut(s)	724
BstYI	RGATCY	2 cut(s)	302, 352
Bsu36I	CCTNAGG	1 cut(s)	348
BsuI	GTATCC	3 cut(s)	700, 747, 815
BsuRI	GGCC	3 cut(s)	346, 664, 848
BtsCI	GGATG	2 cut(s)	211, 634
BtsIMutI	CAGTG	3 cut(s)	210, 315, 580
Cac8I	GCNNGC	2 cut(s)	86, 662
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	800
Cfr13I	GGNCC	2 cut(s)	362, 833
CspAI	ACCGGT	1 cut(s)	800
CviAII	CATG	1 cut(s)	787
DdeI	CTNAG	5 cut(s)	30, 255, 348, 530, 607
DpnI	GATC	2 cut(s)	304, 354
DpnII	GATC	2 cut(s)	302, 352
DrdI	GACNNNNNNGTC	2 cut(s)	278, 898
DseDI	GACNNNNNNGTC	2 cut(s)	278, 898
Eam1104I	CTCTTC	2 cut(s)	131, 585
EarI	CTCTTC	2 cut(s)	131, 585
Eco147I	AGGCCT	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	362, 833
Eco57I	CTGAAG	1 cut(s)	837
Eco81I	CCTNAGG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	766
FaeI	CATG	1 cut(s)	790
FaiI	YATR	7 cut(s)	275, 359, 387, 438, 714, 788, 798
FalI	AAGNNNNNCTT	4 cut(s)	687, 719, 833, 865
FaqI	GGGAC	2 cut(s)	348, 537
FatI	CATG	1 cut(s)	786
Fnu4HI	GCNGC	5 cut(s)	449, 699, 825, 846, 877
FokI	GGATG	2 cut(s)	218, 641
Fsp4HI	GCNGC	5 cut(s)	449, 699, 825, 846, 877
FspBI	CTAG	3 cut(s)	222, 566, 741
GluI	GCNGC	5 cut(s)	449, 699, 825, 846, 877
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	346, 664, 848
HapII	CCGG	3 cut(s)	801, 836, 857
Hin1II	CATG	1 cut(s)	790
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	488, 720
HpaII	CCGG	3 cut(s)	801, 836, 857
HphI	GGTGA	1 cut(s)	850
Hpy166II	GTNNAC	2 cut(s)	601, 903
Hpy188I	TCNGA	2 cut(s)	184, 487
Hpy188III	TCNNGA	1 cut(s)	376
Hpy8I	GTNNAC	2 cut(s)	601, 903
HpyAV	CCTTC	2 cut(s)	553, 835
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4V	TGCA	4 cut(s)	41, 125, 290, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 707, 755, 821
HpyF3I	CTNAG	5 cut(s)	30, 255, 348, 530, 607
Hsp92II	CATG	1 cut(s)	790
Kzo9I	GATC	2 cut(s)	302, 352
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	4 cut(s)	460, 710, 811, 863
MaeI	CTAG	3 cut(s)	222, 566, 741
MaeIII	GTNAC	2 cut(s)	46, 208
MalI	GATC	2 cut(s)	304, 354
MboI	GATC	2 cut(s)	302, 352
MboII	GAAGA	5 cut(s)	17, 148, 467, 602, 830
MflI	RGATCY	2 cut(s)	302, 352
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	6 cut(s)	89, 339, 441, 640, 793, 896
MlyI	GAGTC	2 cut(s)	482, 729
MmeI	TCCRAC	2 cut(s)	88, 510
MseI	TTAA	5 cut(s)	119, 444, 669, 705, 753
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	2 cut(s)	202, 815
MspI	CCGG	3 cut(s)	801, 836, 857
MspR9I	CCNGG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	4 cut(s)	236, 707, 755, 821
NdeII	GATC	2 cut(s)	302, 352
NlaIII	CATG	1 cut(s)	790
NlaIV	GGNNCC	1 cut(s)	364
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	660
PinAI	ACCGGT	1 cut(s)	800
PkrI	GCNGC	5 cut(s)	450, 700, 826, 847, 878
PleI	GAGTC	2 cut(s)	482, 728
PpsI	GAGTC	2 cut(s)	482, 728
PpuMI	RGGWCCY	1 cut(s)	362
PshBI	ATTAAT	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	362, 833
PspPPI	RGGWCCY	1 cut(s)	362
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	302, 352
PvuII	CAGCTG	2 cut(s)	202, 815
RseI	CAYNNNNRTG	1 cut(s)	785
SaqAI	TTAA	5 cut(s)	119, 444, 669, 705, 753
SatI	GCNGC	5 cut(s)	449, 699, 825, 846, 877
Sau3AI	GATC	2 cut(s)	302, 352
Sau96I	GGNCC	2 cut(s)	362, 833
SchI	GAGTC	2 cut(s)	482, 729
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	1 cut(s)	146
SinI	GGWCC	2 cut(s)	362, 833
SmiMI	CAYNNNNRTG	1 cut(s)	785
Sse9I	AATT	6 cut(s)	89, 339, 441, 640, 793, 896
SseBI	AGGCCT	1 cut(s)	346
SsiI	CCGC	2 cut(s)	777, 845
SspMI	CTAG	3 cut(s)	222, 566, 741
StuI	AGGCCT	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	1 cut(s)	575
TasI	AATT	6 cut(s)	89, 339, 441, 640, 793, 896
TauI	GCSGC	1 cut(s)	848
Tru1I	TTAA	5 cut(s)	119, 444, 669, 705, 753
Tru9I	TTAA	5 cut(s)	119, 444, 669, 705, 753
TscAI	CASTG	3 cut(s)	217, 322, 580
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	4 cut(s)	448, 698, 824, 876
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	185, 803
TspRI	CASTG	3 cut(s)	217, 322, 580
Van91I	CCANNNNNTGG	1 cut(s)	660
VpaK11BI	GGWCC	2 cut(s)	362, 833
VspI	ATTAAT	1 cut(s)	669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XspI	CTAG	3 cut(s)	222, 566, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.