Rmu_co8088652.1_g000001

Salutaridine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8088652.1
OG0001077
Physical Location & Seq
Forward (+)
1 .. 229
229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8088652.1_g000001.1.cds

Sequence Viewer

Length: 229 bp
tgtatcaaaagcagctctgaatgcttatacaagagtcttggccaagaagtatcccaaaattgctacaaacgcagttagtcctggttttaccaaaacagacatcaaccaaaataccggtattaacacagttgaagaagctgcagaaggtcctgtgaagctggctttaatagctgactctggtatttctggcctctactttgaaatgacggaagagtcatcctttgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

75

Amino Acids

7.97

Weight (kDa)

4.97

Isoelectric Point (pI)

26.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 40
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 2 cut(s) 132, 201
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 4 cut(s) 15, 138, 158, 171
AluI AGCT 4 cut(s) 15, 138, 158, 171
AoxI GGCC 2 cut(s) 40, 188
ApeKI GCWGC 2 cut(s) 12, 138
AsiGI ACCGGT 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 147
AvaII GGWCC 1 cut(s) 147
BalI TGGCCA 1 cut(s) 42
BbvI GCAGC 2 cut(s) 24, 125
BciT130I CCWGG 1 cut(s) 82
BciVI GTATCC 1 cut(s) 61
BfmI CTRYAG 1 cut(s) 139
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 2 cut(s) 13, 139
BlsI GCNGC 2 cut(s) 14, 140
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 114
BseBI CCWGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 216
BseXI GCAGC 2 cut(s) 24, 125
BshFI GGCC 2 cut(s) 42, 190
BshTI ACCGGT 1 cut(s) 114
BsiSI CCGG 1 cut(s) 115
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 2 cut(s) 42, 190
BspANI GGCC 2 cut(s) 42, 190
BspMAI CTGCAG 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 160
BstF5I GGATG 1 cut(s) 216
BstMWI GCNNNNNNNGC 3 cut(s) 21, 69, 168
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 24, 125
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 2 cut(s) 42, 190
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 147
CspAI ACCGGT 1 cut(s) 114
CviJI RGCY 7 cut(s) 15, 42, 138, 158, 162, 171, 190
CviKI_1 RGCY 7 cut(s) 15, 42, 138, 158, 162, 171, 190
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 80
FaiI YATR 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 13, 139
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 13, 139
GluI GCNGC 2 cut(s) 13, 139
HaeIII GGCC 2 cut(s) 42, 190
HapII CCGG 1 cut(s) 115
HinfI GANTC 3 cut(s) 34, 174, 213
HpaII CCGG 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 69, 168
LpnPI CCDG 7 cut(s) 67, 94, 128, 144, 163, 163, 172
Lsp1109I GCAGC 2 cut(s) 24, 125
MboII GAAGA 2 cut(s) 144, 222
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 1 cut(s) 58
MluNI TGGCCA 1 cut(s) 42
MlyI GAGTC 3 cut(s) 43, 168, 222
MnlI CCTC 1 cut(s) 201
Mox20I TGGCCA 1 cut(s) 42
MscI TGGCCA 1 cut(s) 42
MseI TTAA 2 cut(s) 121, 165
Msp20I TGGCCA 1 cut(s) 42
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 21, 69, 168
PctI GAATGC 1 cut(s) 26
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 2 cut(s) 14, 140
PleI GAGTC 3 cut(s) 42, 168, 221
PpsI GAGTC 3 cut(s) 42, 168, 221
PpuMI RGGWCCY 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspPI GGNCC 1 cut(s) 147
PspPPI RGGWCCY 1 cut(s) 147
PstI CTGCAG 1 cut(s) 143
SaqAI TTAA 2 cut(s) 121, 165
SatI GCNGC 2 cut(s) 13, 139
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 3 cut(s) 43, 168, 222
ScrFI CCNGG 1 cut(s) 82
SetI ASST 5 cut(s) 17, 140, 149, 160, 173
SfcI CTRYAG 1 cut(s) 139
SinI GGWCC 1 cut(s) 147
Sse9I AATT 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 128
TasI AATT 1 cut(s) 58
Tru1I TTAA 2 cut(s) 121, 165
Tru9I TTAA 2 cut(s) 121, 165
TseI GCWGC 2 cut(s) 12, 138
TspGWI ACGGA 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.