Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001077

Physical Location & Seq

Genomic Coordinates Reverse (-)

42218833 .. 42220297

Gene Structure 1465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002949

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAGAAACAACCATCAGTGTTGGGTCCAAGAGGATTGCTGTTGTTACTGGAGCCAACAAAGGGATTGGACTTGAGATTAGTAGGCAATTAGCTTCTAATGGAGTTGGGGTGGTACTAACAGCAAGAGATGTGGAGAGAGGCACAGACTCTGTTCAAAAGCTTAAGACCTCTGGTTTCTCTGATGTGGTCTTTCATCAGCTAGATGTAAATAACCCAACTACCATTGCTTCTCTGACAGATTTTCTCAAAACTCAGTTTGGAAAGCTTGACATTTTGGTTAATAATGCAGGAGTCCTTGGATCCACATACCTCACTGATAACGTCGTAGTGGATCGTCAAAATGTTTTAGGTTCTACATCACTGAAAGAAGTTTTAGTGCAAACATACGAGACAGCAGAGGATTGCTTGAAGACAAACTATTATGGTGCTAAACAACTCACCGAAGCACTTCTTCCACTTCTTCAAAAATCAGAAGCAGCAAGGATAGTCAATGTCTCTTCAGCACTGGGACAGCTAAGGGTTATTGCAAATGAGAAAGCCAAGAAGGAGCTAGGAGATGTCAATAACCTCACCGAGGAAAAAGTGGACAAGCTGGTTGAGGAATTTCTGGAGGATGTGGAGCAGGATTTGATAGAATCCAAAGGCTGGCCTCTAAACATGTCTTCTTACATTGTATCAAAAGCAGCTCTGAATGCTTATACAAGAGTCTTGGCAAAGAAGTATCCCAAAATTGCTACTAACGCAGTTAGTCCTGGTTTTACCAAGACAGACATCAACCAAAATACCGGGACTAACACAGTTGAAGAAGCTGCAGAAGGTCCTGTGAAGCTGGCTTTGATAGCTGACACTGGAATTTCTGGCCTCTACTTTGAAATGACGGAAGAGTCAACCTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

301

Amino Acids

32.39

Weight (kDa)

4.92

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 176	5.1e-28	short chain dehydrogenase
KR	PF08659	15 - 113	5.2e-08	KR domain
adh_short_C2	PF13561	18 - 178	7.8e-19	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	220 - 264	7.7e-06	short chain dehydrogenase
adh_short_C2	PF13561	220 - 271	5.8e-07	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001077)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01930 FvH4_5g01940 FvH4_5g01940
malus_domestica	MD06G1077500.v1.1 MD06G1077700.v1.1
prunus_persica	Prupe.5G095500_v2.0.a1
pyrus_communis	pycom06g07530 pycom06g07550
rosa_chinensis	RchiOBHm_Chr7g0198451 RchiOBHm_Chr7g0198511 RchiOBHm_Chr7g0198551 RchiOBHm_Chr7g0198571 RchiOBHm_Chr7g0211881 RchiOBHm_Chr7g0211891 RchiOBHm_Chr7g0211941 RchiOBHm_Chr7g0211971
rosa_laevigata	RLG00000002949 RLG00000002951 RLG00000002952 RLG00000003860 RLG00000003861 RLG00000003862 RLG00000003864 RLG00000003866
rosa_multiflora	Rmu_co8088652.1_g000001 Rmu_sc0001250.1_g000001 Rmu_sc0002122.1_g000007 Rmu_sc0004229.1_g000017 Rmu_sc0004229.1_g000022 Rmu_sc0007215.1_g000006 Rmu_sc0009005.1_g000002 Rmu_sc0017524.1_g000002 Rmu_sc0018807.1_g000004 Rmu_sc0018807.1_g000008 Rmu_sc0028304.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247250 Rroxscaffold_3G00247280 Rroxscaffold_3G00257670
rosa_rugosa	Rorug07G0048200 Rorug07G0048200 Rorug07G0048300 Rorug07G0129700 Rorug07G0129700
rosa_samantha	Rh7BG174800 Rh7BG175000 Rh7BG175200 Rh7BG256000 Rh7BG256400 Rh7CG181300 Rh7CG278500 Rh7CG278700 Rh7CG279100 Rh7DG173800 Rh7DG174200 Rh7DG269000 Rh7DG269300
rosa_wichuraiana	Rw7G015020 Rw7G015060 Rw7G022380 Rw7G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	886
AccB7I	CCANNNNNTGG	1 cut(s)	648
AclWI	GGATC	3 cut(s)	297, 310, 342
AcsI	RAATTY	2 cut(s)	605, 855
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	3 cut(s)	63, 577, 648
AflII	CTTAAG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	5 cut(s)	158, 412, 467, 806, 875
AjnI	CCWGG	1 cut(s)	754
Alw26I	GTCTC	2 cut(s)	386, 502
AlwI	GGATC	3 cut(s)	297, 310, 342
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	650, 862
ApeKI	GCWGC	3 cut(s)	479, 686, 812
ApoI	RAATTY	2 cut(s)	605, 855
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	2 cut(s)	27, 821
AsuC2I	CCSGG	1 cut(s)	790
AsuHPI	GGTGA	2 cut(s)	433, 565
AvaII	GGWCC	2 cut(s)	27, 821
BamHI	GGATCC	1 cut(s)	302
BbsI	GAAGAC	2 cut(s)	419, 657
BbvI	GCAGC	3 cut(s)	491, 698, 799
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	756
BciVI	GTATCC	1 cut(s)	735
BcnI	CCSGG	1 cut(s)	790
BcoDI	GTCTC	2 cut(s)	386, 502
BfaI	CTAG	2 cut(s)	203, 554
BfmI	CTRYAG	1 cut(s)	813
BfrI	CTTAAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	735
BisI	GCNGC	3 cut(s)	480, 687, 813
BlsI	GCNGC	3 cut(s)	481, 688, 814
Bme1390I	CCNGG	2 cut(s)	756, 790
Bme18I	GGWCC	2 cut(s)	27, 821
BmgT120I	GGNCC	2 cut(s)	27, 821
BmiI	GGNNCC	3 cut(s)	28, 55, 304
BmrFI	CCNGG	2 cut(s)	756, 790
BmrI	ACTGGG	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	518
BpiI	GAAGAC	2 cut(s)	419, 657
BpmI	CTGGAG	2 cut(s)	72, 632
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	790
BsaJI	CCNNGG	2 cut(s)	298, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 577, 648
Bse1I	ACTGG	3 cut(s)	55, 513, 856
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	2 cut(s)	298, 576
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	3 cut(s)	63, 577, 648
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	3 cut(s)	55, 513, 856
BseXI	GCAGC	3 cut(s)	491, 698, 799
BshFI	GGCC	2 cut(s)	652, 864
BsiSI	CCGG	1 cut(s)	789
BslFI	GGGAC	2 cut(s)	525, 805
BslI	CCNNNNNNNGG	3 cut(s)	63, 577, 648
BsmAI	GTCTC	2 cut(s)	386, 502
BsmFI	GGGAC	2 cut(s)	525, 805
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	2 cut(s)	652, 864
Bsp143I	GATC	2 cut(s)	302, 334
BspANI	GGCC	2 cut(s)	652, 864
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	3 cut(s)	28, 55, 304
BspMAI	CTGCAG	1 cut(s)	817
BspPI	GGATC	3 cut(s)	297, 310, 342
BspTI	CTTAAG	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	3 cut(s)	55, 513, 856
BssECI	CCNNGG	2 cut(s)	298, 576
BssMI	GATC	2 cut(s)	302, 334
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	1 cut(s)	802
Bst6I	CTCTTC	2 cut(s)	505, 879
BstAFI	CTTAAG	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	650, 834
BstDEI	CTNAG	2 cut(s)	255, 518
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	2 cut(s)	305, 337
BstMAI	GTCTC	2 cut(s)	386, 502
BstMBI	GATC	2 cut(s)	302, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	695, 743, 842
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	1 cut(s)	664
BstSCI	CCNGG	2 cut(s)	754, 788
BstSFI	CTRYAG	1 cut(s)	813
BstV1I	GCAGC	3 cut(s)	491, 698, 799
BstV2I	GAAGAC	2 cut(s)	419, 657
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	735
BsuRI	GGCC	2 cut(s)	652, 864
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	5 cut(s)	25, 315, 362, 506, 849
Cac8I	GCNNGC	2 cut(s)	650, 834
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	27, 821
Csp6I	GTAC	1 cut(s)	116
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	1 cut(s)	661
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	255, 518
DpnI	GATC	2 cut(s)	304, 336
DpnII	GATC	2 cut(s)	302, 334
DrdI	GACNNNNNNGTC	1 cut(s)	886
DseDI	GACNNNNNNGTC	1 cut(s)	886
Eam1104I	CTCTTC	2 cut(s)	505, 879
EarI	CTCTTC	2 cut(s)	505, 879
Eco130I	CCWWGG	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	27, 821
Eco57I	CTGAAG	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	664
FaiI	YATR	5 cut(s)	310, 388, 426, 662, 702
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	2 cut(s)	525, 805
FatI	CATG	1 cut(s)	660
Fnu4HI	GCNGC	3 cut(s)	480, 687, 813
FokI	GGATG	1 cut(s)	629
Fsp4HI	GCNGC	3 cut(s)	480, 687, 813
FspBI	CTAG	2 cut(s)	203, 554
GluI	GCNGC	3 cut(s)	480, 687, 813
GsuI	CTGGAG	2 cut(s)	72, 632
HaeIII	GGCC	2 cut(s)	652, 864
HapII	CCGG	1 cut(s)	789
Hin1II	CATG	1 cut(s)	664
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HindIII	AAGCTT	2 cut(s)	161, 266
HinfI	GANTC	5 cut(s)	149, 294, 638, 708, 887
HpaII	CCGG	1 cut(s)	789
HphI	GGTGA	2 cut(s)	433, 565
Hpy166II	GTNNAC	2 cut(s)	589, 891
Hpy188I	TCNGA	4 cut(s)	184, 237, 475, 693
Hpy188III	TCNNGA	1 cut(s)	611
Hpy8I	GTNNAC	2 cut(s)	589, 891
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	541, 812
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	4 cut(s)	290, 382, 530, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	695, 743, 842
HpyF3I	CTNAG	2 cut(s)	255, 518
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	664
Kzo9I	GATC	2 cut(s)	302, 334
LmnI	GCTCC	3 cut(s)	53, 550, 622
Lsp1109I	GCAGC	3 cut(s)	491, 698, 799
MaeI	CTAG	2 cut(s)	203, 554
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	2 cut(s)	304, 336
MboI	GATC	2 cut(s)	302, 334
MboII	GAAGA	7 cut(s)	424, 446, 455, 492, 657, 818, 896
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	4 cut(s)	89, 605, 732, 855
MlyI	GAGTC	4 cut(s)	143, 303, 717, 896
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	2 cut(s)	165, 282
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	1 cut(s)	789
MspR9I	CCNGG	2 cut(s)	756, 790
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	3 cut(s)	695, 743, 842
NciI	CCSGG	1 cut(s)	790
NdeII	GATC	2 cut(s)	302, 334
NlaIII	CATG	1 cut(s)	664
NlaIV	GGNNCC	3 cut(s)	28, 55, 304
NspI	RCATGY	1 cut(s)	664
PciI	ACATGT	1 cut(s)	660
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	638
PflMI	CCANNNNNTGG	1 cut(s)	648
PkrI	GCNGC	3 cut(s)	481, 688, 814
PleI	GAGTC	4 cut(s)	143, 302, 716, 895
PpsI	GAGTC	4 cut(s)	143, 302, 716, 895
PpuMI	RGGWCCY	1 cut(s)	821
PscI	ACATGT	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	3 cut(s)	28, 55, 304
PspPI	GGNCC	2 cut(s)	27, 821
PspPPI	RGGWCCY	1 cut(s)	821
PstI	CTGCAG	1 cut(s)	817
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	165, 282
SatI	GCNGC	3 cut(s)	480, 687, 813
Sau3AI	GATC	2 cut(s)	302, 334
Sau96I	GGNCC	2 cut(s)	27, 821
SchI	GAGTC	4 cut(s)	143, 303, 717, 896
ScrFI	CCNGG	2 cut(s)	756, 790
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	2 cut(s)	27, 821
SmlI	CTYRAG	2 cut(s)	74, 164
SmoI	CTYRAG	2 cut(s)	74, 164
Sse9I	AATT	4 cut(s)	89, 605, 732, 855
SspMI	CTAG	2 cut(s)	203, 554
StyD4I	CCNGG	2 cut(s)	754, 788
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	802
TaiI	ACGT	1 cut(s)	327
TasI	AATT	4 cut(s)	89, 605, 732, 855
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	2 cut(s)	165, 282
Tru9I	TTAA	2 cut(s)	165, 282
TscAI	CASTG	5 cut(s)	25, 322, 369, 513, 856
TseI	GCWGC	3 cut(s)	479, 686, 812
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	896
TspRI	CASTG	5 cut(s)	25, 322, 369, 513, 856
Van91I	CCANNNNNTGG	1 cut(s)	648
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	27, 821
XagI	CCTNNNNNAGG	1 cut(s)	575
XapI	RAATTY	2 cut(s)	605, 855
XceI	RCATGY	1 cut(s)	664
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	2 cut(s)	203, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.