Rmu_sc0028304.1_g000003

Salutaridine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028304.1
OG0001077
Physical Location & Seq
Reverse (-)
4751 .. 5059
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028304.1_g000003.1.cds

Sequence Viewer

Length: 309 bp
ctggttgaggaatttctggaggatgtgaagcaggatttgatagaatccaaaggctggcctctaaacatgtcttcttacattgtatcaaaagcagctctgaatgcttatacaagagtcttggccaagaagtatcccaaaattgctacaaacgcagttagtcctggttttaccaaaacagacatcaaccaaaataccggtattaacacagttgaagaagctgcagaaggtcctgtgaagctggctttaatagctgactctggtatttctggcctctactttgaaatgacggaagaatcatcctttgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

102

Amino Acids

11.13

Weight (kDa)

4.57

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 54
AflIII ACRYGT 1 cut(s) 66
AgeI ACCGGT 1 cut(s) 194
AgsI TTSAA 2 cut(s) 212, 281
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 4 cut(s) 95, 218, 238, 251
AluI AGCT 4 cut(s) 95, 218, 238, 251
AoxI GGCC 3 cut(s) 56, 120, 268
ApeKI GCWGC 2 cut(s) 92, 218
ApoI RAATTY 1 cut(s) 11
AsiGI ACCGGT 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 227
AvaII GGWCC 1 cut(s) 227
BalI TGGCCA 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 104, 205
BciT130I CCWGG 1 cut(s) 162
BciVI GTATCC 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 219
BfuI GTATCC 1 cut(s) 141
BisI GCNGC 2 cut(s) 93, 219
BlsI GCNGC 2 cut(s) 94, 220
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 194
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 28, 296
BseLI CCNNNNNNNGG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 104, 205
BshFI GGCC 3 cut(s) 58, 122, 270
BshTI ACCGGT 1 cut(s) 194
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 54
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 3 cut(s) 58, 122, 270
BspANI GGCC 3 cut(s) 58, 122, 270
BspMAI CTGCAG 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 56, 240
BstF5I GGATG 2 cut(s) 28, 296
BstMWI GCNNNNNNNGC 3 cut(s) 101, 149, 248
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 104, 205
BstV2I GAAGAC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 141
BsuRI GGCC 3 cut(s) 58, 122, 270
BtsCI GGATG 2 cut(s) 28, 296
Cac8I GCNNGC 2 cut(s) 56, 240
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 227
CspAI ACCGGT 1 cut(s) 194
CviAII CATG 1 cut(s) 67
CviJI RGCY 9 cut(s) 54, 58, 95, 122, 218, 238, 242, 251, 270
CviKI_1 RGCY 9 cut(s) 54, 58, 95, 122, 218, 238, 242, 251, 270
EaeI YGGCCR 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 68, 108
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 93, 219
FokI GGATG 2 cut(s) 35, 283
Fsp4HI GCNGC 2 cut(s) 93, 219
GluI GCNGC 2 cut(s) 93, 219
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 3 cut(s) 58, 122, 270
HapII CCGG 1 cut(s) 195
Hin1II CATG 1 cut(s) 70
HinfI GANTC 4 cut(s) 44, 114, 254, 293
HpaII CCGG 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 149, 248
Hsp92II CATG 1 cut(s) 70
Lsp1109I GCAGC 2 cut(s) 104, 205
MboII GAAGA 3 cut(s) 63, 224, 302
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 2 cut(s) 11, 138
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 2 cut(s) 123, 248
MnlI CCTC 3 cut(s) 13, 69, 281
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 2 cut(s) 201, 245
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 101, 149, 248
NlaIII CATG 1 cut(s) 70
NspI RCATGY 1 cut(s) 70
PciI ACATGT 1 cut(s) 66
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 44, 293
PflMI CCANNNNNTGG 1 cut(s) 54
PinAI ACCGGT 1 cut(s) 194
PkrI GCNGC 2 cut(s) 94, 220
PleI GAGTC 2 cut(s) 122, 248
PpsI GAGTC 2 cut(s) 122, 248
PpuMI RGGWCCY 1 cut(s) 227
PscI ACATGT 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 1 cut(s) 227
PspPPI RGGWCCY 1 cut(s) 227
PstI CTGCAG 1 cut(s) 223
SaqAI TTAA 2 cut(s) 201, 245
SatI GCNGC 2 cut(s) 93, 219
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 2 cut(s) 123, 248
ScrFI CCNGG 1 cut(s) 162
SetI ASST 5 cut(s) 97, 220, 229, 240, 253
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 227
Sse9I AATT 2 cut(s) 11, 138
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 208
TasI AATT 2 cut(s) 11, 138
TfiI GAWTC 2 cut(s) 44, 293
Tru1I TTAA 2 cut(s) 201, 245
Tru9I TTAA 2 cut(s) 201, 245
TseI GCWGC 2 cut(s) 92, 218
TspGWI ACGGA 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.