Rmu_sc0018807.1_g000004

Salutaridine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018807.1
OG0001077
Physical Location & Seq
Reverse (-)
13426 .. 14598
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018807.1_g000004.1.cds

Sequence Viewer

Length: 645 bp
atggcagaaacaaccatcagttttgagttcaagaggattgctgttgttactggagccaacaaagggattggacttgagattagtaggcaattagcttctaatggagttggggtggtactaacagcaagagatgtgaagagaggcacagaagctgttgaaaagcttaaggcctatggtttctctgatgtggcctttcatcagctagatgtaaataacccaaccaccattgctgctctggcagattttctcaaaacccagtttggaaagcttgacattttgaaagccaagaaggagctaggagatgtcaataacctcaccgaggaaaaagtggacaagctggttgaggaatttctggaggatgtgaagcaggatttgatagaatccaaaggctggcctctaaacatgtcttcttacattgtatcaaaagcagctctgaatgcttatacaagagtcttggccaagaagtatcccaaaattgctacaaacgcagttagtcctggttttaccaaaacagacatcaaccaaaataccggtattaacacagttgaagaagctgcagaaggtcctgtgaagctggctttaatagctgactctggtatttctggcctctactttgaaatgacggaagaatcatcctttgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

214

Amino Acids

23.26

Weight (kDa)

5.14

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 1 cut(s) 347
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 3 cut(s) 63, 319, 390
AflII CTTAAG 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 402
AgeI ACCGGT 1 cut(s) 530
AgsI TTSAA 5 cut(s) 31, 158, 280, 548, 617
AjnI CCWGG 1 cut(s) 496
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 5 cut(s) 168, 189, 392, 456, 604
ApeKI GCWGC 3 cut(s) 230, 428, 554
ApoI RAATTY 1 cut(s) 347
AsiGI ACCGGT 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 563
AsuHPI GGTGA 1 cut(s) 307
AvaII GGWCC 1 cut(s) 563
BalI TGGCCA 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 3 cut(s) 217, 440, 541
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 498
BciVI GTATCC 1 cut(s) 477
BfaI CTAG 2 cut(s) 203, 296
BfmI CTRYAG 1 cut(s) 555
BfrI CTTAAG 1 cut(s) 164
BfuI GTATCC 1 cut(s) 477
BisI GCNGC 3 cut(s) 231, 429, 555
BlsI GCNGC 3 cut(s) 232, 430, 556
Bme1390I CCNGG 1 cut(s) 498
Bme18I GGWCC 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 563
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 498
BmrI ACTGGG 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 2 cut(s) 72, 374
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 318
BsaWI WCCGGW 1 cut(s) 530
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 319, 390
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 2 cut(s) 55, 256
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 364, 632
BseLI CCNNNNNNNGG 3 cut(s) 63, 319, 390
BseMI GCAATG 1 cut(s) 225
BseNI ACTGG 2 cut(s) 55, 256
BseXI GCAGC 3 cut(s) 217, 440, 541
BshFI GGCC 5 cut(s) 170, 191, 394, 458, 606
BshTI ACCGGT 1 cut(s) 530
BsiSI CCGG 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 63, 319, 390
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 5 cut(s) 170, 191, 394, 458, 606
BspANI GGCC 5 cut(s) 170, 191, 394, 458, 606
BspLI GGNNCC 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 559
BspTI CTTAAG 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 2 cut(s) 55, 256
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 1 cut(s) 131
BstAFI CTTAAG 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 392, 576
BstENI CCTNNNNNAGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 364, 632
BstMWI GCNNNNNNNGC 4 cut(s) 236, 437, 485, 584
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 496
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 3 cut(s) 217, 440, 541
BstV2I GAAGAC 1 cut(s) 399
BsuI GTATCC 1 cut(s) 477
BsuRI GGCC 5 cut(s) 170, 191, 394, 458, 606
BtsCI GGATG 2 cut(s) 364, 632
Cac8I GCNNGC 2 cut(s) 392, 576
CaiI CAGNNNCTG 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 563
Csp6I GTAC 1 cut(s) 116
CspAI ACCGGT 1 cut(s) 530
CviAII CATG 1 cut(s) 403
CviQI GTAC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco147I AGGCCT 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 563
EcoNI CCTNNNNNAGG 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 496
FaeI CATG 1 cut(s) 406
FaiI YATR 3 cut(s) 174, 404, 444
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 3 cut(s) 231, 429, 555
FokI GGATG 2 cut(s) 371, 619
Fsp4HI GCNGC 3 cut(s) 231, 429, 555
FspBI CTAG 2 cut(s) 203, 296
GluI GCNGC 3 cut(s) 231, 429, 555
GsuI CTGGAG 2 cut(s) 72, 374
HaeIII GGCC 5 cut(s) 170, 191, 394, 458, 606
HapII CCGG 1 cut(s) 531
Hin1II CATG 1 cut(s) 406
HindIII AAGCTT 2 cut(s) 161, 266
HinfI GANTC 4 cut(s) 380, 450, 590, 629
HpaII CCGG 1 cut(s) 531
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 2 cut(s) 184, 435
Hpy188III TCNNGA 2 cut(s) 31, 353
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 283, 554
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4V TGCA 1 cut(s) 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 437, 485, 584
Hsp92II CATG 1 cut(s) 406
LmnI GCTCC 2 cut(s) 53, 292
Lsp1109I GCAGC 3 cut(s) 217, 440, 541
MaeI CTAG 2 cut(s) 203, 296
MaeIII GTNAC 1 cut(s) 46
MboII GAAGA 4 cut(s) 148, 399, 560, 638
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 3 cut(s) 89, 347, 474
MluNI TGGCCA 1 cut(s) 458
MlyI GAGTC 2 cut(s) 459, 584
MnlI CCTC 8 cut(s) 27, 134, 313, 323, 337, 349, 405, 617
Mox20I TGGCCA 1 cut(s) 458
MscI TGGCCA 1 cut(s) 458
MseI TTAA 3 cut(s) 165, 537, 581
Msp20I TGGCCA 1 cut(s) 458
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 1 cut(s) 531
MspR9I CCNGG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 4 cut(s) 236, 437, 485, 584
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 1 cut(s) 55
NspI RCATGY 1 cut(s) 406
PceI AGGCCT 1 cut(s) 170
PciI ACATGT 1 cut(s) 402
PctI GAATGC 1 cut(s) 442
PfeI GAWTC 2 cut(s) 380, 629
PflMI CCANNNNNTGG 1 cut(s) 390
PinAI ACCGGT 1 cut(s) 530
PkrI GCNGC 3 cut(s) 232, 430, 556
PleI GAGTC 2 cut(s) 458, 584
PpsI GAGTC 2 cut(s) 458, 584
PpuMI RGGWCCY 1 cut(s) 563
PscI ACATGT 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 563
PspPPI RGGWCCY 1 cut(s) 563
PstI CTGCAG 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 3 cut(s) 165, 537, 581
SatI GCNGC 3 cut(s) 231, 429, 555
Sau96I GGNCC 1 cut(s) 563
SchI GAGTC 2 cut(s) 459, 584
ScrFI CCNGG 1 cut(s) 498
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 74, 164
SmoI CTYRAG 2 cut(s) 74, 164
Sse9I AATT 3 cut(s) 89, 347, 474
SseBI AGGCCT 1 cut(s) 170
SspMI CTAG 2 cut(s) 203, 296
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 496
TaaI ACNGT 1 cut(s) 544
TasI AATT 3 cut(s) 89, 347, 474
TfiI GAWTC 2 cut(s) 380, 629
Tru1I TTAA 3 cut(s) 165, 537, 581
Tru9I TTAA 3 cut(s) 165, 537, 581
TseI GCWGC 3 cut(s) 230, 428, 554
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 638
Van91I CCANNNNNTGG 1 cut(s) 390
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 563
XagI CCTNNNNNAGG 1 cut(s) 317
XapI RAATTY 1 cut(s) 347
XceI RCATGY 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XspI CTAG 2 cut(s) 203, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.