Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007215.1

Orthogroup ID

OG0001077

Physical Location & Seq

Genomic Coordinates Forward (+)

42218 .. 44050

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007215.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggcggaaactaccatcaattttgggtcaaagaagattgcagttgttactggagccaacaaagggattggacttgagattagtaagcaattagcttctaaaggagttggggtggtattaacagcaagagatgcgaagagaggaacagaagcagctgaaagcctaaaggcttctggtttctccgatgtggtcttccatcagctagatgtaactgccccaactagcattgcttctttggcaaactttctcaaaaagcaattcagaaagcttgacatattggttaacaatgcaggagtccttggatctgtattcctcgcagacgacatagttgggcctgacaatgttaaacaaaatacagtgcaaacttacgagacagcggcggattgtttgaaaacaaactattatggaatcaagcaactcacagaagcacttgttccactacttcaaaaatctgaagctccaaagatagtcaatgtctcttccacaatgggacagctaagacttatttcaaatgagaaagcaaagaaggagctaggagatgcggataacctcaccgaggagaaagtggacaagctagttgaggaatttctagaggatgtgaagcatgattcgatagaatccaaaggatggcctttagatatatctgcctacattgtatcgaaagcagctcttaatgcttatacaagagtcgtggcaaagaagtatccccacattgctattaacgcagttagtccaggttataccaaaacagatctcaacaataatactgggattctcacagttgaagaagctgcacttggtcctgtgaagctggctttgatagccgaaactggaatttcaggcctcttctttgaccggactgaagagtcaacctttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

293

Amino Acids

31.48

Weight (kDa)

5.59

Isoelectric Point (pI)

26.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001077)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01930 FvH4_5g01940 FvH4_5g01940
malus_domestica	MD06G1077500.v1.1 MD06G1077700.v1.1
prunus_persica	Prupe.5G095500_v2.0.a1
pyrus_communis	pycom06g07530 pycom06g07550
rosa_chinensis	RchiOBHm_Chr7g0198451 RchiOBHm_Chr7g0198511 RchiOBHm_Chr7g0198551 RchiOBHm_Chr7g0198571 RchiOBHm_Chr7g0211881 RchiOBHm_Chr7g0211891 RchiOBHm_Chr7g0211941 RchiOBHm_Chr7g0211971
rosa_laevigata	RLG00000002949 RLG00000002951 RLG00000002952 RLG00000003860 RLG00000003861 RLG00000003862 RLG00000003864 RLG00000003866
rosa_multiflora	Rmu_co8088652.1_g000001 Rmu_sc0001250.1_g000001 Rmu_sc0002122.1_g000007 Rmu_sc0004229.1_g000017 Rmu_sc0004229.1_g000022 Rmu_sc0007215.1_g000006 Rmu_sc0009005.1_g000002 Rmu_sc0017524.1_g000002 Rmu_sc0018807.1_g000004 Rmu_sc0018807.1_g000008 Rmu_sc0028304.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247250 Rroxscaffold_3G00247280 Rroxscaffold_3G00257670
rosa_rugosa	Rorug07G0048200 Rorug07G0048200 Rorug07G0048300 Rorug07G0129700 Rorug07G0129700
rosa_samantha	Rh7BG174800 Rh7BG175000 Rh7BG175200 Rh7BG256000 Rh7BG256400 Rh7CG181300 Rh7CG278500 Rh7CG278700 Rh7CG279100 Rh7DG173800 Rh7DG174200 Rh7DG269000 Rh7DG269300
rosa_wichuraiana	Rw7G015020 Rw7G015060 Rw7G022380 Rw7G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	865
AccB7I	CCANNNNNTGG	1 cut(s)	627
AciI	CCGC	4 cut(s)	5, 377, 380, 542
AclWI	GGATC	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	584, 834
AcuI	CTGAAG	2 cut(s)	474, 882
AfiI	CCNNNNNNNGG	3 cut(s)	63, 556, 627
AgsI	TTSAA	4 cut(s)	391, 446, 510, 785
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	2 cut(s)	780, 812
Alw26I	GTCTC	2 cut(s)	365, 481
AlwI	GGATC	1 cut(s)	310
AoxI	GGCC	3 cut(s)	332, 629, 841
ApeKI	GCWGC	3 cut(s)	152, 665, 791
ApoI	RAATTY	2 cut(s)	584, 834
AspS9I	GGNCC	2 cut(s)	332, 800
AsuHPI	GGTGA	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	800
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	164, 677, 778
BccI	CCATC	3 cut(s)	23, 204, 621
BciT130I	CCWGG	1 cut(s)	735
BciVI	GTATCC	1 cut(s)	714
BcoDI	GTCTC	2 cut(s)	365, 481
BfaI	CTAG	5 cut(s)	203, 222, 533, 575, 590
BfuI	GTATCC	1 cut(s)	714
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	4 cut(s)	153, 378, 666, 792
BlsI	GCNGC	4 cut(s)	154, 379, 667, 793
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	1 cut(s)	800
BmgT120I	GGNCC	2 cut(s)	332, 800
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	735
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	2 cut(s)	121, 529
BmuI	ACTGGG	1 cut(s)	777
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	298, 555
BsaWI	WCCGGW	1 cut(s)	855
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 556, 627
Bse1I	ACTGG	3 cut(s)	55, 772, 835
Bse3DI	GCAATG	2 cut(s)	225, 711
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	298, 555
BseGI	GGATG	2 cut(s)	601, 632
BseLI	CCNNNNNNNGG	3 cut(s)	63, 556, 627
BseMI	GCAATG	2 cut(s)	225, 711
BseNI	ACTGG	3 cut(s)	55, 772, 835
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	3 cut(s)	164, 677, 778
BsgI	GTGCAG	1 cut(s)	777
BshFI	GGCC	3 cut(s)	334, 631, 843
BsiSI	CCGG	1 cut(s)	856
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	3 cut(s)	63, 556, 627
BsmAI	GTCTC	2 cut(s)	365, 481
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	3 cut(s)	334, 631, 843
Bsp143I	GATC	2 cut(s)	302, 751
BspACI	CCGC	4 cut(s)	5, 377, 380, 542
BspANI	GGCC	3 cut(s)	334, 631, 843
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	310
BsrDI	GCAATG	2 cut(s)	225, 711
BsrI	ACTGG	3 cut(s)	55, 772, 835
BssECI	CCNNGG	2 cut(s)	298, 555
BssMI	GATC	2 cut(s)	302, 751
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	358, 781
Bst6I	CTCTTC	4 cut(s)	131, 484, 851, 858
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	813
BstDEI	CTNAG	1 cut(s)	497
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	601, 632
BstKTI	GATC	2 cut(s)	305, 754
BstMAI	GTCTC	2 cut(s)	365, 481
BstMBI	GATC	2 cut(s)	302, 751
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 236, 674, 722, 821
BstNI	CCWGG	1 cut(s)	735
BstSCI	CCNGG	1 cut(s)	733
BstV1I	GCAGC	3 cut(s)	164, 677, 778
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	2 cut(s)	302, 751
BstYI	RGATCY	2 cut(s)	302, 751
BsuI	GTATCC	1 cut(s)	714
BsuRI	GGCC	3 cut(s)	334, 631, 843
BtsCI	GGATG	2 cut(s)	601, 632
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	813
Cfr13I	GGNCC	2 cut(s)	332, 800
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviAII	CATG	1 cut(s)	605
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	2 cut(s)	304, 753
DpnII	GATC	2 cut(s)	302, 751
DrdI	GACNNNNNNGTC	1 cut(s)	865
DseDI	GACNNNNNNGTC	1 cut(s)	865
Eam1104I	CTCTTC	4 cut(s)	131, 484, 851, 858
EarI	CTCTTC	4 cut(s)	131, 484, 851, 858
EciI	GGCGGA	2 cut(s)	20, 395
Eco130I	CCWWGG	1 cut(s)	298
Eco147I	AGGCCT	1 cut(s)	843
Eco47I	GGWCC	1 cut(s)	800
Eco57I	CTGAAG	2 cut(s)	474, 882
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	608
FaiI	YATR	7 cut(s)	275, 326, 405, 606, 641, 681, 741
FalI	AAGNNNNNCTT	4 cut(s)	654, 686, 780, 812
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	1 cut(s)	604
Fnu4HI	GCNGC	4 cut(s)	153, 378, 666, 792
FokI	GGATG	2 cut(s)	608, 639
Fsp4HI	GCNGC	4 cut(s)	153, 378, 666, 792
FspBI	CTAG	5 cut(s)	203, 222, 533, 575, 590
GluI	GCNGC	4 cut(s)	153, 378, 666, 792
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	334, 631, 843
HapII	CCGG	1 cut(s)	856
Hin1II	CATG	1 cut(s)	608
HincII	GTYRAC	2 cut(s)	283, 870
HindII	GTYRAC	2 cut(s)	283, 870
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	7 cut(s)	294, 408, 608, 617, 687, 772, 866
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	856
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	3 cut(s)	283, 568, 870
Hpy188I	TCNGA	3 cut(s)	184, 263, 454
Hpy188III	TCNNGA	1 cut(s)	590
Hpy8I	GTNNAC	3 cut(s)	283, 568, 870
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	2 cut(s)	358, 781
HpyCH4V	TGCA	4 cut(s)	41, 290, 361, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 236, 674, 722, 821
HpyF3I	CTNAG	1 cut(s)	497
Hsp92II	CATG	1 cut(s)	608
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	302, 751
LmnI	GCTCC	3 cut(s)	53, 463, 529
Lsp1109I	GCAGC	3 cut(s)	164, 677, 778
LweI	GCATC	2 cut(s)	121, 529
MaeI	CTAG	5 cut(s)	203, 222, 533, 575, 590
MaeIII	GTNAC	2 cut(s)	46, 208
MalI	GATC	2 cut(s)	304, 753
MboI	GATC	2 cut(s)	302, 751
MboII	GAAGA	7 cut(s)	46, 148, 184, 471, 797, 838, 875
MflI	RGATCY	2 cut(s)	302, 751
MluCI	AATT	5 cut(s)	19, 89, 257, 584, 834
MlyI	GAGTC	3 cut(s)	303, 696, 875
MnlI	CCTC	7 cut(s)	134, 323, 550, 560, 574, 586, 854
MseI	TTAA	5 cut(s)	119, 282, 345, 672, 720
MspA1I	CMGCKG	2 cut(s)	155, 377
MspI	CCGG	1 cut(s)	856
MspR9I	CCNGG	1 cut(s)	735
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	5 cut(s)	131, 236, 674, 722, 821
NdeII	GATC	2 cut(s)	302, 751
NlaIII	CATG	1 cut(s)	608
NlaIV	GGNNCC	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	843
PfeI	GAWTC	4 cut(s)	408, 608, 617, 772
PflMI	CCANNNNNTGG	1 cut(s)	627
PkrI	GCNGC	4 cut(s)	154, 379, 667, 793
PleI	GAGTC	3 cut(s)	302, 695, 874
PpsI	GAGTC	3 cut(s)	302, 695, 874
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	332, 800
PsuI	RGATCY	2 cut(s)	302, 751
PvuII	CAGCTG	1 cut(s)	155
SaqAI	TTAA	5 cut(s)	119, 282, 345, 672, 720
SatI	GCNGC	4 cut(s)	153, 378, 666, 792
Sau3AI	GATC	2 cut(s)	302, 751
Sau96I	GGNCC	2 cut(s)	332, 800
SchI	GAGTC	3 cut(s)	303, 696, 875
ScrFI	CCNGG	1 cut(s)	735
SfaNI	GCATC	2 cut(s)	121, 529
SinI	GGWCC	1 cut(s)	800
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	5 cut(s)	19, 89, 257, 584, 834
SseBI	AGGCCT	1 cut(s)	843
SsiI	CCGC	4 cut(s)	5, 377, 380, 542
SspMI	CTAG	5 cut(s)	203, 222, 533, 575, 590
StuI	AGGCCT	1 cut(s)	843
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	358, 781
TaqI	TCGA	2 cut(s)	611, 659
TasI	AATT	5 cut(s)	19, 89, 257, 584, 834
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	4 cut(s)	408, 608, 617, 772
Tru1I	TTAA	5 cut(s)	119, 282, 345, 672, 720
Tru9I	TTAA	5 cut(s)	119, 282, 345, 672, 720
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	3 cut(s)	152, 665, 791
TspRI	CASTG	1 cut(s)	363
Van91I	CCANNNNNTGG	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	800
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	2 cut(s)	584, 834
XbaI	TCTAGA	1 cut(s)	589
XspI	CTAG	5 cut(s)	203, 222, 533, 575, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.