Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001077

Physical Location & Seq

Genomic Coordinates Forward (+)

29103829 .. 29105292

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18956

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCAGAAACAACCATCAGTTTTGGGTCCAAGAGGATTGCTGTTGTTACTGGAGCCAACAAAGGGATTGGACTTGAGATTAGTAGGCAATTAGCTTCTAATGGAGTTGGGATGGTACTAACAGCAAGAGATGTGAAGAGAGGCACAGAAGCTGTTGAAAAGCTTAAGGCCTCTGGTTTCTCTGATGTGGTCTTTCATCAGCTAGATATAAATAACCCAACTACCATTGCTTCTCTGGCACATTTTCTCAAAACTCAGTTTGGAAAGCTTGACATTTTGGTTTTAGGTTCTACATCACTGAAAGAAGTTTTAGTGCAAACATACGAGACGGCAGAGGATTGCTTGAAAACAAACTATTATGGAATCAAGCAACTCACAGAAGCACTTCTTCCCCTTCTTCAAAAATCAGAAGCAGCAAGGATAGTAAATGTCTCTTCAGCACTTGGACAGCTAAGGGTTATTGCAAATGAGAGAGCCGAGAAAGAGCTAGGAGATGTCAATAACCTCACCGAGGAAAAAGTGGACAAGCTGGTTGAGGAATTTCTGGAGGATGTGAAGCAGGATTTGATAGAATCCAAAGGCTGGCCTCTAAACATATCTTCTTACATTGTATCAAAAGCAGCTCTGAATGCTTATACAAGAGTCTTGGCAAAGAAGTATCCTGAAATTGCGACAAACGCAGTTAGTCCTGGCTTTACCAAAACAGATATCAACCAAAATACTGGGATTAACACAGTTGAAGAAGGTGCAGAAGGTCCTGTGAAGCTGGCTTTGATAGCTGACACTAGAATTTCTTGCCTCTACTTCGAAATGACTGAAGAGTCAACCTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

278

Amino Acids

30.31

Weight (kDa)

5.15

Isoelectric Point (pI)

30.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 154	1.1e-25	short chain dehydrogenase
KR	PF08659	15 - 149	7e-08	KR domain
adh_short_C2	PF13561	18 - 155	2.1e-17	Enoyl-(Acyl carrier protein) reductase
adh_short_C2	PF13561	198 - 241	2.2e-06	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001077)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01930 FvH4_5g01940 FvH4_5g01940
malus_domestica	MD06G1077500.v1.1 MD06G1077700.v1.1
prunus_persica	Prupe.5G095500_v2.0.a1
pyrus_communis	pycom06g07530 pycom06g07550
rosa_chinensis	RchiOBHm_Chr7g0198451 RchiOBHm_Chr7g0198511 RchiOBHm_Chr7g0198551 RchiOBHm_Chr7g0198571 RchiOBHm_Chr7g0211881 RchiOBHm_Chr7g0211891 RchiOBHm_Chr7g0211941 RchiOBHm_Chr7g0211971
rosa_laevigata	RLG00000002949 RLG00000002951 RLG00000002952 RLG00000003860 RLG00000003861 RLG00000003862 RLG00000003864 RLG00000003866
rosa_multiflora	Rmu_co8088652.1_g000001 Rmu_sc0001250.1_g000001 Rmu_sc0002122.1_g000007 Rmu_sc0004229.1_g000017 Rmu_sc0004229.1_g000022 Rmu_sc0007215.1_g000006 Rmu_sc0009005.1_g000002 Rmu_sc0017524.1_g000002 Rmu_sc0018807.1_g000004 Rmu_sc0018807.1_g000008 Rmu_sc0028304.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247250 Rroxscaffold_3G00247280 Rroxscaffold_3G00257670
rosa_rugosa	Rorug07G0048200 Rorug07G0048200 Rorug07G0048300 Rorug07G0129700 Rorug07G0129700
rosa_samantha	Rh7BG174800 Rh7BG175000 Rh7BG175200 Rh7BG256000 Rh7BG256400 Rh7CG181300 Rh7CG278500 Rh7CG278700 Rh7CG279100 Rh7DG173800 Rh7DG174200 Rh7DG269000 Rh7DG269300
rosa_wichuraiana	Rw7G015020 Rw7G015060 Rw7G022380 Rw7G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	820
AccB7I	CCANNNNNTGG	1 cut(s)	582
AcsI	RAATTY	2 cut(s)	539, 789
AcuI	CTGAAG	2 cut(s)	420, 837
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	3 cut(s)	63, 511, 582
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	4 cut(s)	158, 346, 401, 740
AjnI	CCWGG	1 cut(s)	688
Alw26I	GTCTC	2 cut(s)	320, 436
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	168, 584
ApeKI	GCWGC	2 cut(s)	413, 620
ApoI	RAATTY	2 cut(s)	539, 789
Asp700I	GAANNNNTTC	1 cut(s)	384
AspS9I	GGNCC	2 cut(s)	27, 755
AsuHPI	GGTGA	1 cut(s)	499
AsuII	TTCGAA	1 cut(s)	807
AvaII	GGWCC	2 cut(s)	27, 755
BbvI	GCAGC	2 cut(s)	425, 632
BccI	CCATC	2 cut(s)	23, 106
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	690
BciVI	GTATCC	1 cut(s)	669
BcoDI	GTCTC	2 cut(s)	320, 436
BfaI	CTAG	3 cut(s)	203, 488, 786
BfrI	CTTAAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	669
BisI	GCNGC	2 cut(s)	414, 621
BlsI	GCNGC	2 cut(s)	415, 622
Bme1390I	CCNGG	1 cut(s)	690
Bme18I	GGWCC	2 cut(s)	27, 755
BmgT120I	GGNCC	2 cut(s)	27, 755
BmiI	GGNNCC	2 cut(s)	28, 55
BmrFI	CCNGG	1 cut(s)	690
BmrI	ACTGGG	1 cut(s)	732
BmuI	ACTGGG	1 cut(s)	732
BpmI	CTGGAG	2 cut(s)	72, 566
Bpu10I	CCTNAGC	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 511, 582
Bse1I	ACTGG	2 cut(s)	55, 727
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	117, 556
BseLI	CCNNNNNNNGG	3 cut(s)	63, 511, 582
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	55, 727
BseXI	GCAGC	2 cut(s)	425, 632
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	170, 586
BslI	CCNNNNNNNGG	3 cut(s)	63, 511, 582
BsmAI	GTCTC	2 cut(s)	320, 436
BsmBI	CGTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	170, 586
Bsp119I	TTCGAA	1 cut(s)	807
BspANI	GGCC	2 cut(s)	170, 586
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	28, 55
BspT104I	TTCGAA	1 cut(s)	807
BspTI	CTTAAG	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	55, 727
BssECI	CCNNGG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	1 cut(s)	736
Bst6I	CTCTTC	3 cut(s)	131, 439, 813
BstAFI	CTTAAG	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	807
BstC8I	GCNNGC	2 cut(s)	584, 768
BstDEI	CTNAG	2 cut(s)	255, 452
BstENI	CCTNNNNNAGG	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	117, 556
BstMAI	GTCTC	2 cut(s)	320, 436
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 629, 677, 776
BstNI	CCWGG	1 cut(s)	690
BstSCI	CCNGG	1 cut(s)	688
BstV1I	GCAGC	2 cut(s)	425, 632
BstXI	CCANNNNNNTGG	1 cut(s)	722
BsuI	GTATCC	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	170, 586
BtsCI	GGATG	2 cut(s)	117, 556
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	584, 768
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	27, 755
Csp6I	GTAC	1 cut(s)	116
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	255, 452
DrdI	GACNNNNNNGTC	1 cut(s)	820
DseDI	GACNNNNNNGTC	1 cut(s)	820
Eam1104I	CTCTTC	3 cut(s)	131, 439, 813
EarI	CTCTTC	3 cut(s)	131, 439, 813
Eco147I	AGGCCT	1 cut(s)	170
Eco32I	GATATC	1 cut(s)	709
Eco47I	GGWCC	2 cut(s)	27, 755
Eco57I	CTGAAG	2 cut(s)	420, 837
EcoNI	CCTNNNNNAGG	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	688
EcoRV	GATATC	1 cut(s)	709
Esp3I	CGTCTC	1 cut(s)	320
FaiI	YATR	5 cut(s)	209, 322, 360, 596, 636
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
Fnu4HI	GCNGC	2 cut(s)	414, 621
FokI	GGATG	2 cut(s)	124, 563
Fsp4HI	GCNGC	2 cut(s)	414, 621
FspBI	CTAG	3 cut(s)	203, 488, 786
GluI	GCNGC	2 cut(s)	414, 621
GsuI	CTGGAG	2 cut(s)	72, 566
HaeIII	GGCC	2 cut(s)	170, 586
HincII	GTYRAC	1 cut(s)	825
HindII	GTYRAC	1 cut(s)	825
HindIII	AAGCTT	2 cut(s)	161, 266
HinfI	GANTC	4 cut(s)	363, 572, 642, 821
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	523, 825
Hpy188I	TCNGA	3 cut(s)	184, 409, 627
Hpy188III	TCNNGA	2 cut(s)	545, 662
Hpy8I	GTNNAC	2 cut(s)	523, 825
HpyAV	CCTTC	3 cut(s)	404, 737, 746
HpyCH4III	ACNGT	1 cut(s)	736
HpyCH4V	TGCA	3 cut(s)	316, 464, 749
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 629, 677, 776
HpyF3I	CTNAG	2 cut(s)	255, 452
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	2 cut(s)	425, 632
MaeI	CTAG	3 cut(s)	203, 488, 786
MaeIII	GTNAC	1 cut(s)	46
MboII	GAAGA	7 cut(s)	148, 380, 389, 426, 591, 752, 830
MluCI	AATT	4 cut(s)	89, 539, 666, 789
MlyI	GAGTC	2 cut(s)	651, 830
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	2 cut(s)	165, 729
MspCI	CTTAAG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	690
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	4 cut(s)	236, 629, 677, 776
NlaIV	GGNNCC	2 cut(s)	28, 55
NmeAIII	GCCGAG	1 cut(s)	502
NspV	TTCGAA	1 cut(s)	807
PceI	AGGCCT	1 cut(s)	170
PctI	GAATGC	1 cut(s)	634
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	363, 572
PflMI	CCANNNNNTGG	1 cut(s)	582
PkrI	GCNGC	2 cut(s)	415, 622
PleI	GAGTC	2 cut(s)	650, 829
PpsI	GAGTC	2 cut(s)	650, 829
PpuMI	RGGWCCY	1 cut(s)	755
Psp5II	RGGWCCY	1 cut(s)	755
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	2 cut(s)	28, 55
PspPI	GGNCC	2 cut(s)	27, 755
PspPPI	RGGWCCY	1 cut(s)	755
PstNI	CAGNNNCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	165, 729
SatI	GCNGC	2 cut(s)	414, 621
Sau96I	GGNCC	2 cut(s)	27, 755
SchI	GAGTC	2 cut(s)	651, 830
ScrFI	CCNGG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	807
SinI	GGWCC	2 cut(s)	27, 755
SmlI	CTYRAG	2 cut(s)	74, 164
SmoI	CTYRAG	2 cut(s)	74, 164
Sse9I	AATT	4 cut(s)	89, 539, 666, 789
SseBI	AGGCCT	1 cut(s)	170
SspMI	CTAG	3 cut(s)	203, 488, 786
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	688
TaaI	ACNGT	1 cut(s)	736
TaqI	TCGA	1 cut(s)	807
TasI	AATT	4 cut(s)	89, 539, 666, 789
TfiI	GAWTC	2 cut(s)	363, 572
Tru1I	TTAA	2 cut(s)	165, 729
Tru9I	TTAA	2 cut(s)	165, 729
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	2 cut(s)	413, 620
TspDTI	ATGAA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	303
Van91I	CCANNNNNTGG	1 cut(s)	582
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	27, 755
XagI	CCTNNNNNAGG	1 cut(s)	509
XapI	RAATTY	2 cut(s)	539, 789
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	3 cut(s)	203, 488, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.