Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001077

Physical Location & Seq

Genomic Coordinates Forward (+)

53694153 .. 53694668

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATAGACCACATCAATCTTATTTCAAATGAGAAAGCAAAGAAGGAGCTAGGAGATGCTGATAACCTCACCGAGGAGAAAGTGGACAAGCTAGTTGAGGAATTTCTAGAGGATGTGAAGCATGATTCGATAGAATCCGAAGGATGGCCTTTAGATATATCTGCCTACATTATATCAAAAGCAGCTCTTAATGCTTATACAAGAGTCGTGGCAAAGAAGTATCCCCACATTGCTGTAAACGCAGGTAGTCCAGGTTATACCAAAACAGATCTCAACAATAATACCGGGATTCTCACAGTTGAAGAAGCTGCATTTGGTCCTGTGAAGCTGGCTTTGATAGCCGAAACTGGAATTTTAGGCCTCTTCTTTGACCGGATTGAAGAGTCAACCTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

133

Amino Acids

14.54

Weight (kDa)

4.63

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001077)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01930 FvH4_5g01940 FvH4_5g01940
malus_domestica	MD06G1077500.v1.1 MD06G1077700.v1.1
prunus_persica	Prupe.5G095500_v2.0.a1
pyrus_communis	pycom06g07530 pycom06g07550
rosa_chinensis	RchiOBHm_Chr7g0198451 RchiOBHm_Chr7g0198511 RchiOBHm_Chr7g0198551 RchiOBHm_Chr7g0198571 RchiOBHm_Chr7g0211881 RchiOBHm_Chr7g0211891 RchiOBHm_Chr7g0211941 RchiOBHm_Chr7g0211971
rosa_laevigata	RLG00000002949 RLG00000002951 RLG00000002952 RLG00000003860 RLG00000003861 RLG00000003862 RLG00000003864 RLG00000003866
rosa_multiflora	Rmu_co8088652.1_g000001 Rmu_sc0001250.1_g000001 Rmu_sc0002122.1_g000007 Rmu_sc0004229.1_g000017 Rmu_sc0004229.1_g000022 Rmu_sc0007215.1_g000006 Rmu_sc0009005.1_g000002 Rmu_sc0017524.1_g000002 Rmu_sc0018807.1_g000004 Rmu_sc0018807.1_g000008 Rmu_sc0028304.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247250 Rroxscaffold_3G00247280 Rroxscaffold_3G00257670
rosa_rugosa	Rorug07G0048200 Rorug07G0048200 Rorug07G0048300 Rorug07G0129700 Rorug07G0129700
rosa_samantha	Rh7BG174800 Rh7BG175000 Rh7BG175200 Rh7BG256000 Rh7BG256400 Rh7CG181300 Rh7CG278500 Rh7CG278700 Rh7CG279100 Rh7DG173800 Rh7DG174200 Rh7DG269000 Rh7DG269300
rosa_wichuraiana	Rw7G015020 Rw7G015060 Rw7G022380 Rw7G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	101, 351
AfiI	CCNNNNNNNGG	2 cut(s)	73, 144
AgsI	TTSAA	3 cut(s)	27, 302, 380
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	5 cut(s)	49, 91, 185, 308, 328
AluI	AGCT	5 cut(s)	49, 91, 185, 308, 328
AoxI	GGCC	2 cut(s)	146, 358
ApeKI	GCWGC	2 cut(s)	182, 308
ApoI	RAATTY	2 cut(s)	101, 351
AspS9I	GGNCC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	194, 295
BccI	CCATC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	252
BciVI	GTATCC	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	286
BfaI	CTAG	3 cut(s)	50, 92, 107
BfuAI	ACCTGC	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	231
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	2 cut(s)	183, 309
BlsI	GCNGC	2 cut(s)	184, 310
Bme1390I	CCNGG	2 cut(s)	252, 286
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmrFI	CCNGG	2 cut(s)	252, 286
BmsI	GCATC	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 144
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	118, 149
BseLI	CCNNNNNNNGG	2 cut(s)	73, 144
BseMI	GCAATG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	194, 295
BshFI	GGCC	2 cut(s)	148, 360
BsiSI	CCGG	2 cut(s)	285, 373
BslI	CCNNNNNNNGG	2 cut(s)	73, 144
BsnI	GGCC	2 cut(s)	148, 360
Bsp143I	GATC	1 cut(s)	268
BspANI	GGCC	2 cut(s)	148, 360
BspMI	ACCTGC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	368, 375
BstC8I	GCNNGC	1 cut(s)	330
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	118, 149
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 239, 338
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	250, 284
BstV1I	GCAGC	2 cut(s)	194, 295
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	148, 360
BtsCI	GGATG	2 cut(s)	118, 149
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	317
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	9 cut(s)	49, 91, 148, 185, 308, 328, 332, 341, 360
CviKI_1	RGCY	9 cut(s)	49, 91, 148, 185, 308, 328, 332, 341, 360
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	368, 375
EarI	CTCTTC	2 cut(s)	368, 375
Eco147I	AGGCCT	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	250
FaeI	CATG	1 cut(s)	125
FaiI	YATR	5 cut(s)	123, 158, 173, 198, 258
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	183, 309
FokI	GGATG	2 cut(s)	125, 156
Fsp4HI	GCNGC	2 cut(s)	183, 309
FspBI	CTAG	3 cut(s)	50, 92, 107
GluI	GCNGC	2 cut(s)	183, 309
HaeIII	GGCC	2 cut(s)	148, 360
HapII	CCGG	2 cut(s)	285, 373
Hin1II	CATG	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	5 cut(s)	125, 134, 204, 289, 383
HpaII	CCGG	2 cut(s)	285, 373
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	3 cut(s)	85, 238, 387
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	3 cut(s)	85, 238, 387
HpyAV	CCTTC	2 cut(s)	37, 134
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 239, 338
Hsp92II	CATG	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	228, 237, 264, 298, 314, 333, 333, 386
Lsp1109I	GCAGC	2 cut(s)	194, 295
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	3 cut(s)	50, 92, 107
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	314, 355, 392
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	2 cut(s)	101, 351
MlyI	GAGTC	2 cut(s)	213, 392
MnlI	CCTC	5 cut(s)	67, 77, 91, 103, 371
MseI	TTAA	1 cut(s)	189
MspI	CCGG	2 cut(s)	285, 373
MspR9I	CCNGG	2 cut(s)	252, 286
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	191, 239, 338
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	125, 134, 289
PkrI	GCNGC	2 cut(s)	184, 310
PleI	GAGTC	2 cut(s)	212, 391
PpsI	GAGTC	2 cut(s)	212, 391
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	183, 309
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	2 cut(s)	213, 392
ScrFI	CCNGG	2 cut(s)	252, 286
SetI	ASST	9 cut(s)	51, 69, 93, 187, 247, 256, 310, 330, 392
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	317
Sse9I	AATT	2 cut(s)	101, 351
SseBI	AGGCCT	1 cut(s)	360
SspMI	CTAG	3 cut(s)	50, 92, 107
StuI	AGGCCT	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	250, 284
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	101, 351
TfiI	GAWTC	3 cut(s)	125, 134, 289
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseI	GCWGC	2 cut(s)	182, 308
VpaK11BI	GGWCC	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	2 cut(s)	101, 351
XbaI	TCTAGA	1 cut(s)	106
XspI	CTAG	3 cut(s)	50, 92, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.