Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001077

Physical Location & Seq

Genomic Coordinates Forward (+)

19261585 .. 19263369

Gene Structure 1785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1077700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCAGAAATCAGTTTCGGGTCTAAGAGGATTGCGGTTGTTACTGGAGGCAACAAAGGGATTGGATTTGAGATTAGCAGGCAATTAGCAGCTAATGGAGTTGGGGTGGTGTTAACTGCAAGAGATGTGAGGAGGGGAACAGAAGCCGTTGAGAAATTGAAGGCTTCTTATGGCCTCTCTGATGTGGTATTTCATCAGCTTGATGTAACTGACCCATCTAGCATTGCCTCTCTGGCTGAATTTCTCAAAACTCAACTTGGAAAACTTGACATTTTGGTAAATAATGCAGCAGTTATCGGATCCGTATTCCTCACAGATGACAAAGAGAAGTTAGCAATTGGGCCTGATGATCTTATAGGTCCCAAAGCAGGAAATAAGAATCAAGTCCTAAAACAAACCTATGAGACAGCAGGGGATTGCTTAAAAACAAACTACTATGGAATTAAGCAACTCACGGAAGCACTCATTCCACTCCTTCAACAATCCGACTCGGCAAGGATCGTCAATGTCTCCTCCCAATTGGGACAACTAAGGGTTATTCCAAACGAGAAAGCGAAGAAGGAGCTAGTAGATGGTGATAGCCTCACAGAAGAGAAAGTGGACAACCTTGTTGAGGGATTTTTGGAGGATGTGAAGCAGAATTTGGTTGAAGCCAAAAGCTGGCCAACCAATTTCTCTGCCTACACTGTATCCAAAGCCGCTCTGAATGCTTATACAAGAGTTTTGGCTAAGAAGTATTCCAACAAAATTGCTATCAACGCCGTGTGTCCGGGTTTTACTGACACGGACATGAACAATCACACTGGAGTCTTCACAACTGAAGAAGCTGCAAAAGGTCCTGTGAAGCTGGCTTTGCTGCCTGATAATGGAGTTTCTGGCCTTTTCTTCGAACAGACTGAATTGTCAACCTTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

306

Amino Acids

32.86

Weight (kDa)

5.34

Isoelectric Point (pI)

24.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	11 - 179	1e-26	short chain dehydrogenase
KR	PF08659	13 - 106	1.7e-07	KR domain
adh_short_C2	PF13561	18 - 101	4.6e-16	Enoyl-(Acyl carrier protein) reductase
adh_short_C2	PF13561	222 - 270	1.2e-09	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	223 - 267	1.2e-09	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001077)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01930 FvH4_5g01940 FvH4_5g01940
malus_domestica	MD06G1077500.v1.1 MD06G1077700.v1.1
prunus_persica	Prupe.5G095500_v2.0.a1
pyrus_communis	pycom06g07530 pycom06g07550
rosa_chinensis	RchiOBHm_Chr7g0198451 RchiOBHm_Chr7g0198511 RchiOBHm_Chr7g0198551 RchiOBHm_Chr7g0198571 RchiOBHm_Chr7g0211881 RchiOBHm_Chr7g0211891 RchiOBHm_Chr7g0211941 RchiOBHm_Chr7g0211971
rosa_laevigata	RLG00000002949 RLG00000002951 RLG00000002952 RLG00000003860 RLG00000003861 RLG00000003862 RLG00000003864 RLG00000003866
rosa_multiflora	Rmu_co8088652.1_g000001 Rmu_sc0001250.1_g000001 Rmu_sc0002122.1_g000007 Rmu_sc0004229.1_g000017 Rmu_sc0004229.1_g000022 Rmu_sc0007215.1_g000006 Rmu_sc0009005.1_g000002 Rmu_sc0017524.1_g000002 Rmu_sc0018807.1_g000004 Rmu_sc0018807.1_g000008 Rmu_sc0028304.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247250 Rroxscaffold_3G00247280 Rroxscaffold_3G00257670
rosa_rugosa	Rorug07G0048200 Rorug07G0048200 Rorug07G0048300 Rorug07G0129700 Rorug07G0129700
rosa_samantha	Rh7BG174800 Rh7BG175000 Rh7BG175200 Rh7BG256000 Rh7BG256400 Rh7CG181300 Rh7CG278500 Rh7CG278700 Rh7CG279100 Rh7DG173800 Rh7DG174200 Rh7DG269000 Rh7DG269300
rosa_wichuraiana	Rw7G015020 Rw7G015060 Rw7G022380 Rw7G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	901
AccB7I	CCANNNNNTGG	1 cut(s)	660
AccBSI	CCGCTC	1 cut(s)	701
AciI	CCGC	2 cut(s)	35, 699
AclWI	GGATC	3 cut(s)	294, 307, 506
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	2 cut(s)	239, 640
AcuI	CTGAAG	1 cut(s)	840
AfiI	CCNNNNNNNGG	4 cut(s)	368, 613, 660, 866
AgsI	TTSAA	3 cut(s)	160, 479, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	6 cut(s)	92, 199, 565, 660, 827, 847
AluI	AGCT	6 cut(s)	92, 199, 565, 660, 827, 847
Alw26I	GTCTC	2 cut(s)	398, 514
AlwI	GGATC	3 cut(s)	294, 307, 506
AoxI	GGCC	4 cut(s)	172, 341, 662, 877
ApeKI	GCWGC	4 cut(s)	89, 287, 827, 856
ApoI	RAATTY	2 cut(s)	239, 640
AspS9I	GGNCC	3 cut(s)	341, 359, 836
AsuC2I	CCSGG	1 cut(s)	771
AsuHPI	GGTGA	1 cut(s)	587
AsuII	TTCGAA	2 cut(s)	888, 912
AvaII	GGWCC	2 cut(s)	359, 836
BalI	TGGCCA	1 cut(s)	664
BamHI	GGATCC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	802
BbvI	GCAGC	4 cut(s)	101, 299, 814, 843
BccI	CCATC	2 cut(s)	223, 566
BceAI	ACGGC	2 cut(s)	131, 746
BciVI	GTATCC	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	771
BcoDI	GTCTC	2 cut(s)	398, 514
BfaI	CTAG	2 cut(s)	219, 566
BfuI	GTATCC	1 cut(s)	700
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	5 cut(s)	90, 288, 699, 828, 857
BlsI	GCNGC	5 cut(s)	91, 289, 700, 829, 858
Bme1390I	CCNGG	1 cut(s)	771
Bme18I	GGWCC	2 cut(s)	359, 836
BmgT120I	GGNCC	3 cut(s)	341, 359, 836
BmiI	GGNNCC	2 cut(s)	301, 361
BmrFI	CCNGG	1 cut(s)	771
BpiI	GAAGAC	1 cut(s)	802
BpmI	CTGGAG	2 cut(s)	66, 825
Bpu14I	TTCGAA	2 cut(s)	888, 912
BpuMI	CCSGG	1 cut(s)	771
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	4 cut(s)	368, 613, 660, 866
Bse1I	ACTGG	2 cut(s)	49, 808
Bse3DI	GCAATG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	634
BseLI	CCNNNNNNNGG	4 cut(s)	368, 613, 660, 866
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	49, 808
BseRI	GAGGAG	2 cut(s)	145, 502
BseXI	GCAGC	4 cut(s)	101, 299, 814, 843
BshFI	GGCC	4 cut(s)	174, 343, 664, 879
BsiSI	CCGG	1 cut(s)	770
BslFI	GGGAC	2 cut(s)	345, 537
BslI	CCNNNNNNNGG	4 cut(s)	368, 613, 660, 866
BsmAI	GTCTC	2 cut(s)	398, 514
BsmFI	GGGAC	2 cut(s)	345, 537
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	4 cut(s)	174, 343, 664, 879
Bsp119I	TTCGAA	2 cut(s)	888, 912
Bsp143I	GATC	3 cut(s)	299, 349, 498
BspACI	CCGC	2 cut(s)	35, 699
BspANI	GGCC	4 cut(s)	174, 343, 664, 879
BspLI	GGNNCC	2 cut(s)	301, 361
BspPI	GGATC	3 cut(s)	294, 307, 506
BspT104I	TTCGAA	2 cut(s)	888, 912
BsrBI	CCGCTC	1 cut(s)	701
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	49, 808
BssMI	GATC	3 cut(s)	299, 349, 498
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	1 cut(s)	585
BstBI	TTCGAA	2 cut(s)	888, 912
BstC8I	GCNNGC	3 cut(s)	80, 662, 849
BstDEI	CTNAG	3 cut(s)	24, 530, 729
BstENI	CCTNNNNNAGG	1 cut(s)	611
BstF5I	GGATG	1 cut(s)	634
BstKTI	GATC	3 cut(s)	302, 352, 501
BstMAI	GTCTC	2 cut(s)	398, 514
BstMBI	GATC	3 cut(s)	299, 349, 498
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 707, 758, 853
BstSCI	CCNGG	1 cut(s)	769
BstV1I	GCAGC	4 cut(s)	101, 299, 814, 843
BstV2I	GAAGAC	1 cut(s)	802
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	4 cut(s)	174, 343, 664, 879
BtsCI	GGATG	1 cut(s)	634
BtsIMutI	CAGTG	2 cut(s)	684, 801
Cac8I	GCNNGC	3 cut(s)	80, 662, 849
Cfr13I	GGNCC	3 cut(s)	341, 359, 836
CviAII	CATG	1 cut(s)	790
DdeI	CTNAG	3 cut(s)	24, 530, 729
DpnI	GATC	3 cut(s)	301, 351, 500
DpnII	GATC	3 cut(s)	299, 349, 498
DrdI	GACNNNNNNGTC	1 cut(s)	901
DseDI	GACNNNNNNGTC	1 cut(s)	901
EaeI	YGGCCR	1 cut(s)	662
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco47I	GGWCC	2 cut(s)	359, 836
Eco57I	CTGAAG	1 cut(s)	840
EcoNI	CCTNNNNNAGG	1 cut(s)	611
EcoO109I	RGGNCCY	2 cut(s)	359, 836
FaeI	CATG	1 cut(s)	793
FaiI	YATR	6 cut(s)	171, 356, 402, 438, 714, 791
FaqI	GGGAC	2 cut(s)	345, 537
FatI	CATG	1 cut(s)	789
Fnu4HI	GCNGC	5 cut(s)	90, 288, 699, 828, 857
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	5 cut(s)	90, 288, 699, 828, 857
FspBI	CTAG	2 cut(s)	219, 566
GluI	GCNGC	5 cut(s)	90, 288, 699, 828, 857
GsuI	CTGGAG	2 cut(s)	66, 825
HaeIII	GGCC	4 cut(s)	174, 343, 664, 879
HapII	CCGG	1 cut(s)	770
Hin1II	CATG	1 cut(s)	793
HincII	GTYRAC	2 cut(s)	114, 906
HindII	GTYRAC	2 cut(s)	114, 906
HinfI	GANTC	3 cut(s)	379, 488, 807
HpaI	GTTAAC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	770
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	3 cut(s)	114, 601, 906
Hpy188I	TCNGA	4 cut(s)	181, 299, 487, 705
Hpy8I	GTNNAC	3 cut(s)	114, 601, 906
HpyAV	CCTTC	3 cut(s)	154, 485, 553
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4V	TGCA	3 cut(s)	119, 287, 830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 707, 758, 853
HpyF3I	CTNAG	3 cut(s)	24, 530, 729
Hsp92II	CATG	1 cut(s)	793
KspAI	GTTAAC	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	299, 349, 498
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	4 cut(s)	101, 299, 814, 843
MaeI	CTAG	2 cut(s)	219, 566
MaeIII	GTNAC	2 cut(s)	40, 205
MalI	GATC	3 cut(s)	301, 351, 500
MbiI	CCGCTC	1 cut(s)	701
MboI	GATC	3 cut(s)	299, 349, 498
MboII	GAAGA	5 cut(s)	568, 602, 802, 833, 877
MfeI	CAATTG	2 cut(s)	336, 518
MflI	RGATCY	1 cut(s)	299
MlsI	TGGCCA	1 cut(s)	664
MluNI	TGGCCA	1 cut(s)	664
MlyI	GAGTC	2 cut(s)	482, 816
MmeI	TCCRAC	2 cut(s)	510, 765
Mox20I	TGGCCA	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	664
MseI	TTAA	3 cut(s)	113, 422, 444
MslI	CAYNNNNRTG	1 cut(s)	788
Msp20I	TGGCCA	1 cut(s)	664
MspI	CCGG	1 cut(s)	770
MspR9I	CCNGG	1 cut(s)	771
MunI	CAATTG	2 cut(s)	336, 518
Mva1269I	GAATGC	1 cut(s)	712
MwoI	GCNNNNNNNGC	4 cut(s)	233, 707, 758, 853
NciI	CCSGG	1 cut(s)	771
NdeII	GATC	3 cut(s)	299, 349, 498
NlaIII	CATG	1 cut(s)	793
NlaIV	GGNNCC	2 cut(s)	301, 361
NmeAIII	GCCGAG	1 cut(s)	470
NspV	TTCGAA	2 cut(s)	888, 912
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	660
PkrI	GCNGC	5 cut(s)	91, 289, 700, 829, 858
PleI	GAGTC	2 cut(s)	482, 815
PpsI	GAGTC	2 cut(s)	482, 815
PpuMI	RGGWCCY	2 cut(s)	359, 836
Psp5II	RGGWCCY	2 cut(s)	359, 836
PspN4I	GGNNCC	2 cut(s)	301, 361
PspPI	GGNCC	3 cut(s)	341, 359, 836
PspPPI	RGGWCCY	2 cut(s)	359, 836
PsuI	RGATCY	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	788
SaqAI	TTAA	3 cut(s)	113, 422, 444
SatI	GCNGC	5 cut(s)	90, 288, 699, 828, 857
Sau3AI	GATC	3 cut(s)	299, 349, 498
Sau96I	GGNCC	3 cut(s)	341, 359, 836
SchI	GAGTC	2 cut(s)	482, 816
ScrFI	CCNGG	1 cut(s)	771
SfuI	TTCGAA	2 cut(s)	888, 912
SinI	GGWCC	2 cut(s)	359, 836
SmiMI	CAYNNNNRTG	1 cut(s)	788
SsiI	CCGC	2 cut(s)	35, 699
SspMI	CTAG	2 cut(s)	219, 566
StyD4I	CCNGG	1 cut(s)	769
TaaI	ACNGT	1 cut(s)	688
TaqI	TCGA	2 cut(s)	888, 912
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	113, 422, 444
Tru9I	TTAA	3 cut(s)	113, 422, 444
TscAI	CASTG	2 cut(s)	691, 808
TseI	GCWGC	4 cut(s)	89, 287, 827, 856
TspDTI	ATGAA	2 cut(s)	182, 806
TspGWI	ACGGA	3 cut(s)	292, 470, 800
TspRI	CASTG	2 cut(s)	691, 808
Van91I	CCANNNNNTGG	1 cut(s)	660
VpaK11BI	GGWCC	2 cut(s)	359, 836
XagI	CCTNNNNNAGG	1 cut(s)	611
XapI	RAATTY	2 cut(s)	239, 640
XspI	CTAG	2 cut(s)	219, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.