Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001077

Physical Location & Seq

Genomic Coordinates Reverse (-)

40645114 .. 40646652

Gene Structure 1539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAGAAACAACCATCAGTTTTGAGTCCAAGAGGATTGCTGTTGTTACTGGAGCCAACAAAGGGATTGGACTTGAGATTAGCAGGCAATTAGCTTCTAATGGAGTTGGGGTGGTACTAACAGCAAGAGATTTGAAGAGAGGCACAGAAGCTGTTGAAAAGCTTAAGGCCTCTGGTTTCTCTGATGTGGTCTTTCATCAGCTAGATGTAAATAACCCAACCACCATTGCTGCTCTGGCAGATTTTCTCAAAGCCCAGTTTGGAAAGCTTGACATTTTGGTTAATAATGCAGGAGTCCTTGGATCTACATACCTCACCGATAACGTCGTAGTGGAGCCTCAAGATATCTTAGGTTCTACATCACTGAAAGAAGTTTTGGTGCAAACATATGAGACGGCAGAGGATTGCTTGAAAACAAACTATTATGGAATCAAGCAACTCACAGAAGCACTTCTTCCACTTCTTAAAAAATCAGCAGCAGCAAGGATAGTCAATGTCTCTTCAGCACTGGGACAGCTAAGGGCTATTGCAAATGAGAAAGCCAAGAAGGAGCTAGGAGATGTCAATAACCTCACCGAGGAAAAAGTGGACAAGCTGGTTGAGGAATTTCTGGAGGATGTGAAGCAGGATTTGATAGAATCCAAAGGCTGGCCTCTAAACATGTCGTCTTACATTGTATCAAAAGCAGCTCTGAATGCTTATACAAGAGTCTTGGCCAAGAAGCATCCCAAAATTGCTACAAACGCAGTTAGTCCTGGTTTTACAAAAACAGACATCAACCAAAATACCGGGATTAACACAGTTGAAGAAGCTGCAGAAGGTCCTGTGAAGCTGGCTTTGATAGCTGACTCTGGTATTTCTGGCCTCTACTTTGAAATGGCGGAAGAGTCATCCTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

300

Amino Acids

32.27

Weight (kDa)

5.15

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 174	3.6e-29	short chain dehydrogenase
KR	PF08659	15 - 107	4.2e-08	KR domain
adh_short_C2	PF13561	18 - 178	2.6e-19	Enoyl-(Acyl carrier protein) reductase
adh_short_C2	PF13561	217 - 267	2.1e-06	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001077)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01930 FvH4_5g01940 FvH4_5g01940
malus_domestica	MD06G1077500.v1.1 MD06G1077700.v1.1
prunus_persica	Prupe.5G095500_v2.0.a1
pyrus_communis	pycom06g07530 pycom06g07550
rosa_chinensis	RchiOBHm_Chr7g0198451 RchiOBHm_Chr7g0198511 RchiOBHm_Chr7g0198551 RchiOBHm_Chr7g0198571 RchiOBHm_Chr7g0211881 RchiOBHm_Chr7g0211891 RchiOBHm_Chr7g0211941 RchiOBHm_Chr7g0211971
rosa_laevigata	RLG00000002949 RLG00000002951 RLG00000002952 RLG00000003860 RLG00000003861 RLG00000003862 RLG00000003864 RLG00000003866
rosa_multiflora	Rmu_co8088652.1_g000001 Rmu_sc0001250.1_g000001 Rmu_sc0002122.1_g000007 Rmu_sc0004229.1_g000017 Rmu_sc0004229.1_g000022 Rmu_sc0007215.1_g000006 Rmu_sc0009005.1_g000002 Rmu_sc0017524.1_g000002 Rmu_sc0018807.1_g000004 Rmu_sc0018807.1_g000008 Rmu_sc0028304.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247250 Rroxscaffold_3G00247280 Rroxscaffold_3G00257670
rosa_rugosa	Rorug07G0048200 Rorug07G0048200 Rorug07G0048300 Rorug07G0129700 Rorug07G0129700
rosa_samantha	Rh7BG174800 Rh7BG175000 Rh7BG175200 Rh7BG256000 Rh7BG256400 Rh7CG181300 Rh7CG278500 Rh7CG278700 Rh7CG279100 Rh7DG173800 Rh7DG174200 Rh7DG269000 Rh7DG269300
rosa_wichuraiana	Rw7G015020 Rw7G015060 Rw7G022380 Rw7G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	648
AciI	CCGC	1 cut(s)	881
AclWI	GGATC	1 cut(s)	310
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	3 cut(s)	63, 577, 648
AflII	CTTAAG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	5 cut(s)	136, 158, 412, 806, 875
AjnI	CCWGG	1 cut(s)	754
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
Alw26I	GTCTC	2 cut(s)	386, 502
AlwI	GGATC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	4 cut(s)	168, 650, 714, 862
ApeKI	GCWGC	5 cut(s)	230, 476, 479, 686, 812
ApoI	RAATTY	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	821
AsuC2I	CCSGG	1 cut(s)	790
AsuHPI	GGTGA	2 cut(s)	307, 565
AvaII	GGWCC	1 cut(s)	821
BalI	TGGCCA	1 cut(s)	716
BbvI	GCAGC	5 cut(s)	217, 488, 491, 698, 799
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	411
BciT130I	CCWGG	1 cut(s)	756
BcnI	CCSGG	1 cut(s)	790
BcoDI	GTCTC	2 cut(s)	386, 502
BfaI	CTAG	2 cut(s)	203, 554
BfmI	CTRYAG	1 cut(s)	813
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	5 cut(s)	231, 477, 480, 687, 813
BlsI	GCNGC	5 cut(s)	232, 478, 481, 688, 814
Bme1390I	CCNGG	2 cut(s)	756, 790
Bme18I	GGWCC	1 cut(s)	821
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	2 cut(s)	55, 336
BmrFI	CCNGG	2 cut(s)	756, 790
BmrI	ACTGGG	2 cut(s)	250, 518
BmsI	GCATC	1 cut(s)	733
BmuI	ACTGGG	2 cut(s)	250, 518
BpmI	CTGGAG	2 cut(s)	72, 632
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	2 cut(s)	95, 324
BpuMI	CCSGG	1 cut(s)	790
BsaJI	CCNNGG	2 cut(s)	298, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 577, 648
Bse1I	ACTGG	3 cut(s)	55, 256, 513
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	2 cut(s)	298, 576
BseGI	GGATG	3 cut(s)	622, 724, 890
BseLI	CCNNNNNNNGG	3 cut(s)	63, 577, 648
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	3 cut(s)	55, 256, 513
BseXI	GCAGC	5 cut(s)	217, 488, 491, 698, 799
BshFI	GGCC	4 cut(s)	170, 652, 716, 864
BsiSI	CCGG	1 cut(s)	789
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	3 cut(s)	63, 577, 648
BsmAI	GTCTC	2 cut(s)	386, 502
BsmBI	CGTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	4 cut(s)	170, 652, 716, 864
Bsp143I	GATC	1 cut(s)	302
BspACI	CCGC	1 cut(s)	881
BspANI	GGCC	4 cut(s)	170, 652, 716, 864
BspLI	GGNNCC	2 cut(s)	55, 336
BspMAI	CTGCAG	1 cut(s)	817
BspPI	GGATC	1 cut(s)	310
BspTI	CTTAAG	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	3 cut(s)	55, 256, 513
BssECI	CCNNGG	2 cut(s)	298, 576
BssMI	GATC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	1 cut(s)	802
Bst6I	CTCTTC	3 cut(s)	131, 505, 879
BstAFI	CTTAAG	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	86, 650, 834
BstDEI	CTNAG	2 cut(s)	349, 518
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	3 cut(s)	622, 724, 890
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	2 cut(s)	386, 502
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 695, 743, 842
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	1 cut(s)	664
BstSCI	CCNGG	2 cut(s)	754, 788
BstSFI	CTRYAG	1 cut(s)	813
BstV1I	GCAGC	5 cut(s)	217, 488, 491, 698, 799
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuRI	GGCC	4 cut(s)	170, 652, 716, 864
BtsCI	GGATG	3 cut(s)	622, 724, 890
BtsIMutI	CAGTG	2 cut(s)	362, 506
Cac8I	GCNNGC	3 cut(s)	86, 650, 834
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	821
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	1 cut(s)	661
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	349, 518
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	3 cut(s)	131, 505, 879
EarI	CTCTTC	3 cut(s)	131, 505, 879
EciI	GGCGGA	1 cut(s)	896
Eco130I	CCWWGG	1 cut(s)	298
Eco147I	AGGCCT	1 cut(s)	170
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	1 cut(s)	664
FaiI	YATR	6 cut(s)	310, 388, 390, 426, 662, 702
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	1 cut(s)	660
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	5 cut(s)	231, 477, 480, 687, 813
FokI	GGATG	3 cut(s)	629, 711, 877
Fsp4HI	GCNGC	5 cut(s)	231, 477, 480, 687, 813
FspBI	CTAG	2 cut(s)	203, 554
GluI	GCNGC	5 cut(s)	231, 477, 480, 687, 813
GsuI	CTGGAG	2 cut(s)	72, 632
HaeIII	GGCC	4 cut(s)	170, 652, 716, 864
HapII	CCGG	1 cut(s)	789
Hin1II	CATG	1 cut(s)	664
HindIII	AAGCTT	2 cut(s)	161, 266
HinfI	GANTC	7 cut(s)	26, 294, 429, 638, 708, 848, 887
HpaII	CCGG	1 cut(s)	789
HphI	GGTGA	2 cut(s)	307, 565
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	184, 693
Hpy188III	TCNNGA	2 cut(s)	341, 611
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	541, 812
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	4 cut(s)	290, 382, 530, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 695, 743, 842
HpyF3I	CTNAG	2 cut(s)	349, 518
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	664
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	3 cut(s)	53, 334, 550
Lsp1109I	GCAGC	5 cut(s)	217, 488, 491, 698, 799
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	2 cut(s)	203, 554
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	5 cut(s)	148, 446, 492, 818, 896
MflI	RGATCY	1 cut(s)	302
MlsI	TGGCCA	1 cut(s)	716
MluCI	AATT	3 cut(s)	89, 605, 732
MluNI	TGGCCA	1 cut(s)	716
MlyI	GAGTC	5 cut(s)	35, 303, 717, 842, 896
Mox20I	TGGCCA	1 cut(s)	716
MroXI	GAANNNNTTC	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	716
MseI	TTAA	4 cut(s)	165, 282, 465, 795
Msp20I	TGGCCA	1 cut(s)	716
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	1 cut(s)	789
MspR9I	CCNGG	2 cut(s)	756, 790
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	4 cut(s)	236, 695, 743, 842
NciI	CCSGG	1 cut(s)	790
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	664
NlaIV	GGNNCC	2 cut(s)	55, 336
NspI	RCATGY	1 cut(s)	664
PceI	AGGCCT	1 cut(s)	170
PciI	ACATGT	1 cut(s)	660
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	429, 638
PflMI	CCANNNNNTGG	1 cut(s)	648
PkrI	GCNGC	5 cut(s)	232, 478, 481, 688, 814
PleI	GAGTC	5 cut(s)	34, 302, 716, 842, 895
PpsI	GAGTC	5 cut(s)	34, 302, 716, 842, 895
PpuMI	RGGWCCY	1 cut(s)	821
PscI	ACATGT	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	2 cut(s)	55, 336
PspPI	GGNCC	1 cut(s)	821
PspPPI	RGGWCCY	1 cut(s)	821
PstI	CTGCAG	1 cut(s)	817
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SaqAI	TTAA	4 cut(s)	165, 282, 465, 795
SatI	GCNGC	5 cut(s)	231, 477, 480, 687, 813
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	1 cut(s)	821
SchI	GAGTC	5 cut(s)	35, 303, 717, 842, 896
ScrFI	CCNGG	2 cut(s)	756, 790
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	821
SmlI	CTYRAG	3 cut(s)	74, 164, 339
SmoI	CTYRAG	3 cut(s)	74, 164, 339
Sse9I	AATT	3 cut(s)	89, 605, 732
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	881
SspMI	CTAG	2 cut(s)	203, 554
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	754, 788
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	802
TaiI	ACGT	1 cut(s)	327
TasI	AATT	3 cut(s)	89, 605, 732
TfiI	GAWTC	2 cut(s)	429, 638
Tru1I	TTAA	4 cut(s)	165, 282, 465, 795
Tru9I	TTAA	4 cut(s)	165, 282, 465, 795
TscAI	CASTG	2 cut(s)	369, 513
TseI	GCWGC	5 cut(s)	230, 476, 479, 686, 812
TspDTI	ATGAA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	369, 513
Van91I	CCANNNNNTGG	1 cut(s)	648
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	821
XagI	CCTNNNNNAGG	1 cut(s)	575
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	2 cut(s)	203, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.