WD repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WD40_Prp19 | PF24814 | 207 - 401 | 1.4e-18 | Prp19 WD40 domain |
| Beta-prop_WDR3_1st | PF25173 | 246 - 359 | 2.1e-10 | WDR3 first beta-propeller domain |
| Beta-prop_THOC3 | PF25174 | 253 - 428 | 2.5e-26 | THOC3 beta-propeller domain |
| WD40_WDHD1_1st | PF24817 | 257 - 362 | 5.9e-07 | WDHD1 first WD40 domain |
| Beta-prop_WDR36-Utp21_2nd | PF25168 | 258 - 389 | 1.4e-12 | WDR36/Utp21 second beta-propeller domain |
| Beta-prop_WDR5 | PF25175 | 259 - 436 | 1.9e-20 | WDR5 beta-propeller domain |
| Beta-prop_EML_2 | PF23414 | 259 - 403 | 7.8e-16 | Echinoderm microtubule-associated protein second beta-propeller |
| Beta-prop_WDR3_2nd | PF25172 | 259 - 363 | 5.3e-07 | WDR3 second beta-propeller domain |
| Beta-prop_WDR3_1st | PF25173 | 265 - 436 | 2.5e-13 | WDR3 first beta-propeller domain |
| WDR55 | PF24796 | 283 - 408 | 5.9e-07 | WDR55 |
| WD40_CDC20-Fz | PF24807 | 289 - 426 | 2.6e-09 | CDC20/Fizzy WD40 domain |
| WD40 | PF00400 | 319 - 356 | 2.6e-07 | WD domain, G-beta repeat |
| WD40_Gbeta | PF25391 | 325 - 436 | 5e-06 | G protein beta WD-40 repeat protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 190 |
| AatII | GACGTC | 1 cut(s) | 60 |
| AccB1I | GGYRCC | 1 cut(s) | 1008 |
| AccBSI | CCGCTC | 1 cut(s) | 589 |
| AccI | GTMKAC | 1 cut(s) | 465 |
| AccII | CGCG | 4 cut(s) | 108, 120, 273, 280 |
| AccIII | TCCGGA | 1 cut(s) | 950 |
| AciI | CCGC | 7 cut(s) | 106, 108, 118, 160, 271, 587, 645 |
| AclWI | GGATC | 1 cut(s) | 775 |
| AcoI | YGGCCR | 1 cut(s) | 584 |
| AcsI | RAATTY | 2 cut(s) | 433, 1133 |
| AcuI | CTGAAG | 2 cut(s) | 1246, 1296 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AfaI | GTAC | 5 cut(s) | 32, 269, 528, 552, 909 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 213, 337, 1005 |
| AflII | CTTAAG | 1 cut(s) | 509 |
| AgsI | TTSAA | 3 cut(s) | 286, 1102, 1330 |
| AjnI | CCWGG | 2 cut(s) | 568, 685 |
| AluBI | AGCT | 8 cut(s) | 103, 427, 846, 898, 959, 1004, 1127, 1280 |
| AluI | AGCT | 8 cut(s) | 103, 427, 846, 898, 959, 1004, 1127, 1280 |
| Alw26I | GTCTC | 1 cut(s) | 510 |
| AlwI | GGATC | 1 cut(s) | 775 |
| Ama87I | CYCGRG | 2 cut(s) | 26, 332 |
| Aor13HI | TCCGGA | 1 cut(s) | 950 |
| AoxI | GGCC | 3 cut(s) | 444, 584, 967 |
| ApeKI | GCWGC | 1 cut(s) | 898 |
| ApoI | RAATTY | 2 cut(s) | 433, 1133 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 134, 166 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 368 |
| AspLEI | GCGC | 1 cut(s) | 280 |
| AspS9I | GGNCC | 2 cut(s) | 444, 967 |
| AsuC2I | CCSGG | 1 cut(s) | 1013 |
| AsuHPI | GGTGA | 4 cut(s) | 190, 668, 926, 1253 |
| AsuII | TTCGAA | 1 cut(s) | 153 |
| AvaI | CYCGRG | 2 cut(s) | 26, 332 |
| BaeGI | GKGCMC | 1 cut(s) | 981 |
| BanI | GGYRCC | 1 cut(s) | 1008 |
| BbsI | GAAGAC | 5 cut(s) | 81, 138, 162, 188, 1357 |
| BbvCI | CCTCAGC | 1 cut(s) | 1000 |
| BbvI | GCAGC | 1 cut(s) | 885 |
| BccI | CCATC | 4 cut(s) | 737, 884, 1010, 1139 |
| BceAI | ACGGC | 1 cut(s) | 67 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 71, 105, 812, 846 |
| BciT130I | CCWGG | 2 cut(s) | 570, 687 |
| BcnI | CCSGG | 1 cut(s) | 1013 |
| BcoDI | GTCTC | 1 cut(s) | 510 |
| BfaI | CTAG | 4 cut(s) | 258, 594, 1091, 1369 |
| BfrI | CTTAAG | 1 cut(s) | 509 |
| BisI | GCNGC | 3 cut(s) | 587, 646, 899 |
| BlpI | GCTNAGC | 1 cut(s) | 315 |
| BlsI | GCNGC | 3 cut(s) | 588, 647, 900 |
| BmcAI | AGTACT | 2 cut(s) | 528, 909 |
| Bme1390I | CCNGG | 3 cut(s) | 570, 687, 1013 |
| BmeT110I | CYCGRG | 2 cut(s) | 26, 332 |
| BmgT120I | GGNCC | 2 cut(s) | 444, 967 |
| BmiI | GGNNCC | 4 cut(s) | 968, 1010, 1040, 1076 |
| BmrFI | CCNGG | 3 cut(s) | 570, 687, 1013 |
| BmrI | ACTGGG | 2 cut(s) | 1044, 1195 |
| BmsI | GCATC | 4 cut(s) | 123, 462, 787, 931 |
| BmuI | ACTGGG | 2 cut(s) | 1044, 1195 |
| BpiI | GAAGAC | 5 cut(s) | 81, 138, 162, 188, 1357 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 298, 330 |
| BpmI | CTGGAG | 1 cut(s) | 708 |
| Bpu10I | CCTNAGC | 3 cut(s) | 428, 1000, 1215 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 315 |
| Bpu14I | TTCGAA | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 1 cut(s) | 786 |
| BpuMI | CCSGG | 1 cut(s) | 1013 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 4 cut(s) | 106, 236, 569, 652 |
| BsaWI | WCCGGW | 1 cut(s) | 950 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 213, 337, 1005 |
| Bse1I | ACTGG | 3 cut(s) | 769, 1039, 1201 |
| BseAI | TCCGGA | 1 cut(s) | 950 |
| BseBI | CCWGG | 2 cut(s) | 570, 687 |
| BseDI | CCNNGG | 4 cut(s) | 106, 236, 569, 652 |
| BseGI | GGATG | 2 cut(s) | 114, 1021 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 213, 337, 1005 |
| BseMII | CTCAG | 4 cut(s) | 329, 549, 959, 1014 |
| BseNI | ACTGG | 3 cut(s) | 769, 1039, 1201 |
| BseSI | GKGCMC | 1 cut(s) | 981 |
| BseX3I | CGGCCG | 1 cut(s) | 584 |
| BseXI | GCAGC | 1 cut(s) | 885 |
| BsgI | GTGCAG | 2 cut(s) | 620, 942 |
| Bsh1236I | CGCG | 4 cut(s) | 108, 120, 273, 280 |
| Bsh1285I | CGRYCG | 1 cut(s) | 587 |
| BshFI | GGCC | 3 cut(s) | 446, 586, 969 |
| BshNI | GGYRCC | 1 cut(s) | 1008 |
| BsiEI | CGRYCG | 1 cut(s) | 587 |
| BsiHKCI | CYCGRG | 2 cut(s) | 26, 332 |
| BsiSI | CCGG | 3 cut(s) | 951, 1013, 1251 |
| BslFI | GGGAC | 4 cut(s) | 870, 1072, 1079, 1233 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 213, 337, 1005 |
| BsmAI | GTCTC | 1 cut(s) | 510 |
| BsmFI | GGGAC | 4 cut(s) | 870, 1072, 1079, 1233 |
| BsnI | GGCC | 3 cut(s) | 446, 586, 969 |
| BsoBI | CYCGRG | 2 cut(s) | 26, 332 |
| Bsp119I | TTCGAA | 1 cut(s) | 153 |
| Bsp1286I | GDGCHC | 1 cut(s) | 981 |
| Bsp13I | TCCGGA | 1 cut(s) | 950 |
| Bsp143I | GATC | 2 cut(s) | 767, 1300 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 315 |
| BspACI | CCGC | 7 cut(s) | 106, 108, 118, 160, 271, 587, 645 |
| BspANI | GGCC | 3 cut(s) | 446, 586, 969 |
| BspCNI | CTCAG | 4 cut(s) | 328, 550, 958, 1013 |
| BspEI | TCCGGA | 1 cut(s) | 950 |
| BspFNI | CGCG | 4 cut(s) | 108, 120, 273, 280 |
| BspLI | GGNNCC | 4 cut(s) | 968, 1010, 1040, 1076 |
| BspPI | GGATC | 1 cut(s) | 775 |
| BspT104I | TTCGAA | 1 cut(s) | 153 |
| BspT107I | GGYRCC | 1 cut(s) | 1008 |
| BspTI | CTTAAG | 1 cut(s) | 509 |
| BsrBI | CCGCTC | 1 cut(s) | 589 |
| BsrI | ACTGG | 3 cut(s) | 769, 1039, 1201 |
| BssECI | CCNNGG | 4 cut(s) | 106, 236, 569, 652 |
| BssMI | GATC | 2 cut(s) | 767, 1300 |
| BssNAI | GTATAC | 1 cut(s) | 466 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| BssT1I | CCWWGG | 1 cut(s) | 652 |
| Bst1107I | GTATAC | 1 cut(s) | 466 |
| Bst2UI | CCWGG | 2 cut(s) | 570, 687 |
| Bst4CI | ACNGT | 3 cut(s) | 237, 929, 1086 |
| Bst6I | CTCTTC | 1 cut(s) | 359 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstAFI | CTTAAG | 1 cut(s) | 509 |
| BstBI | TTCGAA | 1 cut(s) | 153 |
| BstC8I | GCNNGC | 5 cut(s) | 347, 643, 671, 835, 903 |
| BstDEI | CTNAG | 7 cut(s) | 315, 428, 558, 945, 982, 1000, 1215 |
| BstDSI | CCRYGG | 2 cut(s) | 106, 236 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 335 |
| BstF5I | GGATG | 2 cut(s) | 114, 1021 |
| BstFNI | CGCG | 4 cut(s) | 108, 120, 273, 280 |
| BstHHI | GCGC | 1 cut(s) | 280 |
| BstKTI | GATC | 2 cut(s) | 770, 1303 |
| BstMAI | GTCTC | 1 cut(s) | 510 |
| BstMBI | GATC | 2 cut(s) | 767, 1300 |
| BstMCI | CGRYCG | 1 cut(s) | 587 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 203, 286, 843, 1124, 1172 |
| BstNI | CCWGG | 2 cut(s) | 570, 687 |
| BstSCI | CCNGG | 3 cut(s) | 568, 685, 1011 |
| BstSLI | GKGCMC | 1 cut(s) | 981 |
| BstUI | CGCG | 4 cut(s) | 108, 120, 273, 280 |
| BstV1I | GCAGC | 1 cut(s) | 885 |
| BstV2I | GAAGAC | 5 cut(s) | 81, 138, 162, 188, 1357 |
| BstZ17I | GTATAC | 1 cut(s) | 466 |
| BstZI | CGGCCG | 1 cut(s) | 584 |
| BsuRI | GGCC | 3 cut(s) | 446, 586, 969 |
| BtgI | CCRYGG | 2 cut(s) | 106, 236 |
| BtsCI | GGATG | 2 cut(s) | 114, 1021 |
| BtsI | GCAGTG | 2 cut(s) | 747, 1101 |
| BtsIMutI | CAGTG | 2 cut(s) | 747, 1101 |
| Cac8I | GCNNGC | 5 cut(s) | 347, 643, 671, 835, 903 |
| CfoI | GCGC | 1 cut(s) | 280 |
| Cfr13I | GGNCC | 2 cut(s) | 444, 967 |
| Cfr42I | CCGCGG | 1 cut(s) | 109 |
| CseI | GACGC | 1 cut(s) | 92 |
| Csp6I | GTAC | 5 cut(s) | 31, 268, 527, 551, 908 |
| CviAII | CATG | 1 cut(s) | 458 |
| CviQI | GTAC | 5 cut(s) | 31, 268, 527, 551, 908 |
| DdeI | CTNAG | 7 cut(s) | 315, 428, 558, 945, 982, 1000, 1215 |
| DpnI | GATC | 2 cut(s) | 769, 1302 |
| DpnII | GATC | 2 cut(s) | 767, 1300 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 190 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 190 |
| EaeI | YGGCCR | 1 cut(s) | 584 |
| EagI | CGGCCG | 1 cut(s) | 584 |
| Eam1104I | CTCTTC | 1 cut(s) | 359 |
| EarI | CTCTTC | 1 cut(s) | 359 |
| EclXI | CGGCCG | 1 cut(s) | 584 |
| Eco130I | CCWWGG | 1 cut(s) | 652 |
| Eco52I | CGGCCG | 1 cut(s) | 584 |
| Eco57I | CTGAAG | 2 cut(s) | 1246, 1296 |
| Eco88I | CYCGRG | 2 cut(s) | 26, 332 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 335 |
| EcoO109I | RGGNCCY | 1 cut(s) | 967 |
| EcoRII | CCWGG | 2 cut(s) | 568, 685 |
| EcoT14I | CCWWGG | 1 cut(s) | 652 |
| EcoT22I | ATGCAT | 1 cut(s) | 495 |
| ErhI | CCWWGG | 1 cut(s) | 652 |
| FaeI | CATG | 1 cut(s) | 461 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 147, 179, 329, 361 |
| FaqI | GGGAC | 4 cut(s) | 870, 1072, 1079, 1233 |
| FatI | CATG | 1 cut(s) | 457 |
| FauNDI | CATATG | 1 cut(s) | 1309 |
| FblI | GTMKAC | 1 cut(s) | 465 |
| Fnu4HI | GCNGC | 3 cut(s) | 587, 646, 899 |
| FokI | GGATG | 2 cut(s) | 101, 1028 |
| Fsp4HI | GCNGC | 3 cut(s) | 587, 646, 899 |
| FspBI | CTAG | 4 cut(s) | 258, 594, 1091, 1369 |
| GlaI | GCGC | 1 cut(s) | 279 |
| GluI | GCNGC | 3 cut(s) | 587, 646, 899 |
| GsuI | CTGGAG | 1 cut(s) | 708 |
| HaeIII | GGCC | 3 cut(s) | 446, 586, 969 |
| HapII | CCGG | 3 cut(s) | 951, 1013, 1251 |
| HgaI | GACGC | 1 cut(s) | 92 |
| HhaI | GCGC | 1 cut(s) | 280 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin1II | CATG | 1 cut(s) | 461 |
| Hin6I | GCGC | 1 cut(s) | 278 |
| HinP1I | GCGC | 1 cut(s) | 278 |
| HincII | GTYRAC | 2 cut(s) | 40, 408 |
| HindII | GTYRAC | 2 cut(s) | 40, 408 |
| HindIII | AAGCTT | 1 cut(s) | 1278 |
| HinfI | GANTC | 4 cut(s) | 122, 134, 167, 1271 |
| HpaII | CCGG | 3 cut(s) | 951, 1013, 1251 |
| HphI | GGTGA | 4 cut(s) | 190, 668, 926, 1253 |
| Hpy166II | GTNNAC | 5 cut(s) | 40, 408, 466, 659, 1186 |
| Hpy188I | TCNGA | 5 cut(s) | 127, 139, 755, 1144, 1276 |
| Hpy188III | TCNNGA | 8 cut(s) | 13, 326, 334, 594, 887, 951, 1206, 1355 |
| Hpy8I | GTNNAC | 5 cut(s) | 40, 408, 466, 659, 1186 |
| Hpy99I | CGWCG | 8 cut(s) | 38, 59, 62, 86, 131, 146, 149, 196 |
| HpyAV | CCTTC | 5 cut(s) | 211, 331, 352, 1096, 1270 |
| HpyCH4III | ACNGT | 3 cut(s) | 237, 929, 1086 |
| HpyCH4IV | ACGT | 3 cut(s) | 33, 57, 191 |
| HpyCH4V | TGCA | 9 cut(s) | 349, 475, 493, 601, 669, 740, 788, 905, 923 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 203, 286, 843, 1124, 1172 |
| HpyF3I | CTNAG | 7 cut(s) | 315, 428, 558, 945, 982, 1000, 1215 |
| HpySE526I | ACGT | 3 cut(s) | 33, 57, 191 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| Hsp92II | CATG | 1 cut(s) | 461 |
| HspAI | GCGC | 1 cut(s) | 278 |
| Kpn2I | TCCGGA | 1 cut(s) | 950 |
| KspI | CCGCGG | 1 cut(s) | 109 |
| Kzo9I | GATC | 2 cut(s) | 767, 1300 |
| LmnI | GCTCC | 2 cut(s) | 108, 1115 |
| Lsp1109I | GCAGC | 1 cut(s) | 885 |
| LweI | GCATC | 4 cut(s) | 123, 462, 787, 931 |
| MaeI | CTAG | 4 cut(s) | 258, 594, 1091, 1369 |
| MaeII | ACGT | 3 cut(s) | 33, 57, 191 |
| MalI | GATC | 2 cut(s) | 769, 1302 |
| MbiI | CCGCTC | 1 cut(s) | 589 |
| MboI | GATC | 2 cut(s) | 767, 1300 |
| MboII | GAAGA | 8 cut(s) | 86, 143, 167, 193, 376, 638, 1119, 1357 |
| MfeI | CAATTG | 1 cut(s) | 546 |
| MhlI | GDGCHC | 1 cut(s) | 981 |
| MluCI | AATT | 4 cut(s) | 250, 433, 546, 1133 |
| MlyI | GAGTC | 2 cut(s) | 128, 1265 |
| MmeI | TCCRAC | 2 cut(s) | 150, 180 |
| Mph1103I | ATGCAT | 1 cut(s) | 495 |
| MroI | TCCGGA | 1 cut(s) | 950 |
| MroXI | GAANNNNTTC | 1 cut(s) | 368 |
| MseI | TTAA | 4 cut(s) | 510, 678, 840, 972 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1014 |
| MspA1I | CMGCKG | 1 cut(s) | 108 |
| MspCI | CTTAAG | 1 cut(s) | 509 |
| MspI | CCGG | 3 cut(s) | 951, 1013, 1251 |
| MspR9I | CCNGG | 3 cut(s) | 570, 687, 1013 |
| MunI | CAATTG | 1 cut(s) | 546 |
| MvaI | CCWGG | 2 cut(s) | 570, 687 |
| MvnI | CGCG | 4 cut(s) | 108, 120, 273, 280 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 203, 286, 843, 1124, 1172 |
| NciI | CCSGG | 1 cut(s) | 1013 |
| NdeI | CATATG | 1 cut(s) | 1309 |
| NdeII | GATC | 2 cut(s) | 767, 1300 |
| NlaIII | CATG | 1 cut(s) | 461 |
| NlaIV | GGNNCC | 4 cut(s) | 968, 1010, 1040, 1076 |
| NmeAIII | GCCGAG | 1 cut(s) | 562 |
| NsiI | ATGCAT | 1 cut(s) | 495 |
| NspV | TTCGAA | 1 cut(s) | 153 |
| PaeR7I | CTCGAG | 2 cut(s) | 26, 332 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 24, 33, 39, 57, 150 |
| PdmI | GAANNNNTTC | 1 cut(s) | 368 |
| PfeI | GAWTC | 2 cut(s) | 122, 167 |
| PkrI | GCNGC | 3 cut(s) | 588, 647, 900 |
| PleI | GAGTC | 2 cut(s) | 128, 1265 |
| PpsI | GAGTC | 2 cut(s) | 128, 1265 |
| Psp6I | CCWGG | 2 cut(s) | 568, 685 |
| PspGI | CCWGG | 2 cut(s) | 568, 685 |
| PspN4I | GGNNCC | 4 cut(s) | 968, 1010, 1040, 1076 |
| PspPI | GGNCC | 2 cut(s) | 444, 967 |
| PspXI | VCTCGAGB | 1 cut(s) | 26 |
| RsaI | GTAC | 5 cut(s) | 32, 269, 528, 552, 909 |
| RsaNI | GTAC | 5 cut(s) | 31, 268, 527, 551, 908 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1014 |
| SacII | CCGCGG | 1 cut(s) | 109 |
| SaqAI | TTAA | 4 cut(s) | 510, 678, 840, 972 |
| SatI | GCNGC | 3 cut(s) | 587, 646, 899 |
| Sau3AI | GATC | 2 cut(s) | 767, 1300 |
| Sau96I | GGNCC | 2 cut(s) | 444, 967 |
| ScaI | AGTACT | 2 cut(s) | 528, 909 |
| SchI | GAGTC | 2 cut(s) | 128, 1265 |
| ScrFI | CCNGG | 3 cut(s) | 570, 687, 1013 |
| SduI | GDGCHC | 1 cut(s) | 981 |
| SfaNI | GCATC | 4 cut(s) | 123, 462, 787, 931 |
| Sfr274I | CTCGAG | 2 cut(s) | 26, 332 |
| Sfr303I | CCGCGG | 1 cut(s) | 109 |
| SfuI | TTCGAA | 1 cut(s) | 153 |
| SgrBI | CCGCGG | 1 cut(s) | 109 |
| SlaI | CTCGAG | 2 cut(s) | 26, 332 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1014 |
| SmlI | CTYRAG | 4 cut(s) | 26, 332, 509, 801 |
| SmoI | CTYRAG | 4 cut(s) | 26, 332, 509, 801 |
| Sse9I | AATT | 4 cut(s) | 250, 433, 546, 1133 |
| SsiI | CCGC | 7 cut(s) | 106, 108, 118, 160, 271, 587, 645 |
| SspI | AATATT | 1 cut(s) | 1026 |
| SspMI | CTAG | 4 cut(s) | 258, 594, 1091, 1369 |
| StyD4I | CCNGG | 3 cut(s) | 568, 685, 1011 |
| StyI | CCWWGG | 1 cut(s) | 652 |
| TaaI | ACNGT | 3 cut(s) | 237, 929, 1086 |
| TaiI | ACGT | 3 cut(s) | 36, 60, 194 |
| TaqI | TCGA | 5 cut(s) | 27, 153, 170, 333, 822 |
| TasI | AATT | 4 cut(s) | 250, 433, 546, 1133 |
| TatI | WGTACW | 2 cut(s) | 526, 907 |
| TauI | GCSGC | 2 cut(s) | 589, 648 |
| TfiI | GAWTC | 2 cut(s) | 122, 167 |
| Tru1I | TTAA | 4 cut(s) | 510, 678, 840, 972 |
| Tru9I | TTAA | 4 cut(s) | 510, 678, 840, 972 |
| TscAI | CASTG | 2 cut(s) | 747, 1101 |
| TseI | GCWGC | 1 cut(s) | 898 |
| TspDTI | ATGAA | 2 cut(s) | 407, 735 |
| TspRI | CASTG | 2 cut(s) | 747, 1101 |
| Vha464I | CTTAAG | 1 cut(s) | 509 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 335 |
| XapI | RAATTY | 2 cut(s) | 433, 1133 |
| XbaI | TCTAGA | 1 cut(s) | 593 |
| XhoI | CTCGAG | 2 cut(s) | 26, 332 |
| XmiI | GTMKAC | 1 cut(s) | 465 |
| XmnI | GAANNNNTTC | 1 cut(s) | 368 |
| XspI | CTAG | 4 cut(s) | 258, 594, 1091, 1369 |
| ZraI | GACGTC | 1 cut(s) | 58 |
| ZrmI | AGTACT | 2 cut(s) | 528, 909 |
| Zsp2I | ATGCAT | 1 cut(s) | 495 |