Rw7G040480

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001698
Physical Location & Seq
Reverse (-)
63014849 .. 63022608
7760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040480.1

Sequence Viewer

Length: 555 bp
ATGGCGGATTTCCAGAACGATGACCTGGAAAGCACCGCAATGTTACAGAGCAAGGTGAAGACTGATACTTCGGCTTTGGAAGCTAGAAATGGAAAAGCCATACAGGGAATATTATGGGAGAGAAATAGAACCCAAATTTTGCAATTTCAGAAAACCTCAGGGACCTCTCCTTTTCCATCAGAGTGCTTGCAAGTGGAGAAAGGGAAGAGTTTCTATGACTTTCACTACAACACAAGGCTTGTGAAGTCGACAATTGTGCATTTTCAGCTAAGGTATTTGTTATGGGCCACATCAAAGCATGATGTATACCTGATGCAGAACTTTTCAGTAATGCATTGGAACTCTTTGTACAGGAGAGGCACCGAGGTACTCAATGCGGCGAAACCAATTGTACCTACTGAGGTATTAAATGCTAGACTGATTACCATGGAAATCAAGGCTAAAAGGATAGTGCAAATAAGCACTATGGCTGTCAAGGACAATTTGTTGGTTGCTGGGGGCTTCCAAGGTGAACTAATCTGCAAGGTAGGCCGGTGTTATGACAAATGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

184

Amino Acids

21.04

Weight (kDa)

9.3

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccI GTMKAC 2 cut(s) 248, 306
AciI CCGC 3 cut(s) 5, 36, 377
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 3 cut(s) 350, 369, 393
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 2 cut(s) 83, 268
AluI AGCT 2 cut(s) 83, 268
AoxI GGCC 2 cut(s) 285, 529
ApoI RAATTY 1 cut(s) 135
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
Asp700I GAANNNNTTC 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 162, 285
AsuHPI GGTGA 2 cut(s) 67, 521
AvaII GGWCC 1 cut(s) 162
AxyI CCTNAGG 1 cut(s) 157
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 65
BccI CCATC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 26
BfaI CTAG 2 cut(s) 84, 414
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 162, 285
BmiI GGNNCC 2 cut(s) 163, 361
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 363, 426, 505
Bse118I RCCGGY 1 cut(s) 531
Bse21I CCTNAGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 3 cut(s) 363, 426, 505
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 171, 390
BseYI CCCAGC 1 cut(s) 494
BshFI GGCC 2 cut(s) 287, 531
BshNI GGYRCC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 532
BslFI GGGAC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 2 cut(s) 287, 531
Bsp1407I TGTACA 1 cut(s) 348
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 3 cut(s) 5, 36, 377
BspANI GGCC 2 cut(s) 287, 531
BspCNI CTCAG 2 cut(s) 170, 391
BspLI GGNNCC 2 cut(s) 163, 361
BspT107I GGYRCC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 531
BsrGI TGTACA 1 cut(s) 348
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 3 cut(s) 363, 426, 505
BssNAI GTATAC 1 cut(s) 307
BssT1I CCWWGG 2 cut(s) 426, 505
Bst1107I GTATAC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 3 cut(s) 157, 269, 399
BstDSI CCRYGG 1 cut(s) 426
BstMWI GCNNNNNNNGC 3 cut(s) 80, 265, 528
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 65
BstZ17I GTATAC 1 cut(s) 307
Bsu36I CCTNAGG 1 cut(s) 157
BsuRI GGCC 2 cut(s) 287, 531
BtgI CCRYGG 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 2 cut(s) 162, 285
Csp6I GTAC 3 cut(s) 349, 368, 392
CviAII CATG 2 cut(s) 299, 427
CviQI GTAC 3 cut(s) 349, 368, 392
DdeI CTNAG 3 cut(s) 157, 269, 399
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 426, 505
Eco47I GGWCC 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 2 cut(s) 426, 505
EcoT22I ATGCAT 1 cut(s) 336
ErhI CCWWGG 2 cut(s) 426, 505
FaeI CATG 2 cut(s) 302, 430
FaqI GGGAC 1 cut(s) 175
FatI CATG 2 cut(s) 298, 426
FblI GTMKAC 2 cut(s) 248, 306
Fnu4HI GCNGC 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 2 cut(s) 84, 414
GluI GCNGC 1 cut(s) 378
GsaI CCCAGC 1 cut(s) 498
HaeIII GGCC 2 cut(s) 287, 531
HapII CCGG 1 cut(s) 532
Hin1II CATG 2 cut(s) 302, 430
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HpaII CCGG 1 cut(s) 532
HphI GGTGA 2 cut(s) 67, 521
Hpy166II GTNNAC 3 cut(s) 249, 307, 512
Hpy188I TCNGA 2 cut(s) 150, 181
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 3 cut(s) 249, 307, 512
HpyCH4V TGCA 7 cut(s) 142, 190, 259, 316, 334, 454, 522
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 265, 528
HpyF3I CTNAG 3 cut(s) 157, 269, 399
Hsp92II CATG 2 cut(s) 302, 430
LpnPI CCDG 9 cut(s) 11, 26, 38, 89, 144, 323, 337, 480, 545
LweI GCATC 1 cut(s) 303
MaeI CTAG 2 cut(s) 84, 414
MaeIII GTNAC 1 cut(s) 42
MboII GAAGA 2 cut(s) 70, 217
MfeI CAATTG 2 cut(s) 252, 387
MluCI AATT 5 cut(s) 135, 143, 252, 387, 481
MnlI CCTC 5 cut(s) 166, 175, 350, 358, 394
Mph1103I ATGCAT 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 2 cut(s) 38, 181
MspI CCGG 1 cut(s) 532
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 2 cut(s) 252, 387
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 80, 265, 528
NcoI CCATGG 1 cut(s) 426
NlaIII CATG 2 cut(s) 302, 430
NlaIV GGNNCC 2 cut(s) 163, 361
NsiI ATGCAT 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 379
PpuMI RGGWCCY 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 163, 361
PspPI GGNCC 2 cut(s) 162, 285
PspPPI RGGWCCY 1 cut(s) 162
PsrI GAACNNNNNNTAC 2 cut(s) 332, 364
RsaI GTAC 3 cut(s) 350, 369, 393
RsaNI GTAC 3 cut(s) 349, 368, 392
RseI CAYNNNNRTG 2 cut(s) 38, 181
SalI GTCGAC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 1 cut(s) 378
Sau96I GGNCC 2 cut(s) 162, 285
ScrFI CCNGG 1 cut(s) 26
SfaNI GCATC 1 cut(s) 303
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 2 cut(s) 38, 181
Sse9I AATT 5 cut(s) 135, 143, 252, 387, 481
SsiI CCGC 3 cut(s) 5, 36, 377
SspI AATATT 1 cut(s) 111
SspMI CTAG 2 cut(s) 84, 414
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 2 cut(s) 426, 505
TaqI TCGA 1 cut(s) 248
TasI AATT 5 cut(s) 135, 143, 252, 387, 481
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 1 cut(s) 135
XmiI GTMKAC 2 cut(s) 248, 306
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 2 cut(s) 84, 414
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.