Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000063.1

Orthogroup ID

OG0001698

Physical Location & Seq

Genomic Coordinates Reverse (-)

183913 .. 188364

Gene Structure 4452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000063.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggaagcggctgatgaagagaagcagaaacataatagtactagaatggaagcctttgtgcgttttgctaatcttgagactgcaaatgctgaccttgcgaaatcactagccactgtgcagtggaatctcgaacaggaggagtgcttgcaagtggagaaggtgaagagtttctatgactttaactacaactcaaggcttgtcaagtccacaattgtgcattttcaggtagagatcatgatcttgctaaggaatttgttatgggccacatcaaagcatgatgtatacctgatgcagaacttctcagtgatgcattggaactccttgcacaggagaggcagcgaagtactcaatgtggccaaaccaattgtacctactgagatgagcagtatggttctcaaggacaatttgttggttgctgtgggcttccaaggtgaacaaatctgcaagcacatgaaacaacctggagttgctttctgctcaaaactaacgacagatgagaatgccatcactaatgcagtggatattttccaaaacccaacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

180

Amino Acids

20.61

Weight (kDa)

6.06

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G78070 AT1G78070 AT1G78070
fragaria_vesca	FvH4_5g37830
malus_domestica	MD08G1180000.v1.1 MD15G1365300.v1.1
prunus_persica	Prupe.1G513500_v2.0.a1
pyrus_communis	pycom08g15410 pycom15g32770
rosa_chinensis	RchiOBHm_Chr7g0239721 RchiOBHm_Chr7g0239731 RchiOBHm_Chr7g0239761 RchiOBHm_Chr7g0239781 RchiOBHm_Chr7g0239801
rosa_laevigata	RLG00000000730 RLG00000000732 RLG00000029177
rosa_multiflora	Rmu_sc0000063.1_g000032 Rmu_sc0000063.1_g000033 Rmu_sc0000063.1_g000038 Rmu_sc0000101.1_g000005 Rmu_sc0000101.1_g000014 Rmu_sc0000101.1_g000017 Rmu_sc0000101.1_g000020 Rmu_sc0003622.1_g000011 Rmu_sc0004440.1_g000004 Rmu_sc0007193.1_g000002
rosa_roxburghii	Rroxscaffold_3G00220800 Rroxscaffold_3G00220820
rosa_rugosa	Rorug07G0328900.1 Rorug07G0329400
rosa_samantha	Rh7AG483100 Rh7AG483200 Rh7AG483300 Rh7AG483500 Rh7CG500900 Rh7CG501100
rosa_wichuraiana	Rw7G040440 Rw7G040470 Rw7G040480 Rw7G040520 Rw7G040540 Rw7G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	1 cut(s)	8
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	250
AfaI	GTAC	3 cut(s)	40, 345, 369
AfiI	CCNNNNNNNGG	1 cut(s)	327
AjnI	CCWGG	1 cut(s)	460
AleI	CACNNNNGTG	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	71
AoxI	GGCC	2 cut(s)	261, 354
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	1 cut(s)	250
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	172, 443
BalI	TGGCCA	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	512
BciT130I	CCWGG	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	42, 107
BisI	GCNGC	2 cut(s)	9, 337
BlsI	GCNGC	2 cut(s)	10, 338
BmcAI	AGTACT	2 cut(s)	40, 345
Bme1390I	CCNGG	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	279, 297
BpmI	CTGGAG	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	3 cut(s)	95, 175, 380
BsaBI	GATNNNNATC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	427
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	315, 366
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	263, 356
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	2 cut(s)	263, 356
Bsp143I	GATC	2 cut(s)	231, 237
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	263, 356
BspCNI	CTCAG	2 cut(s)	314, 367
BspHI	TCATGA	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	2 cut(s)	231, 237
BssNAI	GTATAC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	427
Bst1107I	GTATAC	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	12, 158
BstC8I	GCNNGC	2 cut(s)	146, 446
BstDEI	CTNAG	3 cut(s)	245, 301, 375
BstENI	CCTNNNNNAGG	1 cut(s)	325
BstKTI	GATC	2 cut(s)	234, 240
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	231, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	348
BstZ17I	GTATAC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	263, 356
BtsI	GCAGTG	2 cut(s)	125, 522
BtsIMutI	CAGTG	4 cut(s)	111, 125, 309, 522
Cac8I	GCNNGC	2 cut(s)	146, 446
CciI	TCATGA	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	261
Csp6I	GTAC	3 cut(s)	39, 344, 368
CviAII	CATG	3 cut(s)	235, 275, 451
CviJI	RGCY	7 cut(s)	11, 53, 110, 196, 263, 356, 423
CviKI_1	RGCY	7 cut(s)	11, 53, 110, 196, 263, 356, 423
CviQI	GTAC	3 cut(s)	39, 344, 368
DdeI	CTNAG	3 cut(s)	245, 301, 375
DpnI	GATC	2 cut(s)	233, 239
DpnII	GATC	2 cut(s)	231, 237
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	2 cut(s)	12, 158
EarI	CTCTTC	2 cut(s)	12, 158
Eco130I	CCWWGG	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	3 cut(s)	238, 278, 454
FaiI	YATR	8 cut(s)	33, 174, 236, 259, 276, 283, 389, 452
FatI	CATG	3 cut(s)	234, 274, 450
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	9, 337
Fsp4HI	GCNGC	2 cut(s)	9, 337
FspBI	CTAG	2 cut(s)	42, 107
GluI	GCNGC	2 cut(s)	9, 337
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	2 cut(s)	263, 356
Hin1II	CATG	3 cut(s)	238, 278, 454
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	2 cut(s)	172, 443
Hpy166II	GTNNAC	3 cut(s)	207, 283, 434
Hpy188III	TCNNGA	3 cut(s)	74, 128, 235
Hpy8I	GTNNAC	3 cut(s)	207, 283, 434
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	9 cut(s)	83, 118, 148, 217, 292, 310, 325, 444, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	245, 301, 375
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	3 cut(s)	238, 278, 454
Kzo9I	GATC	2 cut(s)	231, 237
LpnPI	CCDG	6 cut(s)	119, 209, 299, 313, 447, 474
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	2 cut(s)	279, 297
MaeI	CTAG	2 cut(s)	42, 107
MaeII	ACGT	1 cut(s)	539
MalI	GATC	2 cut(s)	233, 239
MboI	GATC	2 cut(s)	231, 237
MboII	GAAGA	2 cut(s)	29, 175
MfeI	CAATTG	2 cut(s)	210, 363
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	4 cut(s)	210, 250, 363, 403
MluNI	TGGCCA	1 cut(s)	356
MnlI	CCTC	2 cut(s)	130, 326
Mox20I	TGGCCA	1 cut(s)	356
Mph1103I	ATGCAT	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	212
Msp20I	TGGCCA	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	462
MunI	CAATTG	2 cut(s)	210, 363
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	231, 237
NlaIII	CATG	3 cut(s)	238, 278, 454
NsiI	ATGCAT	1 cut(s)	312
OliI	CACNNNNGTG	1 cut(s)	212
PagI	TCATGA	1 cut(s)	234
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	10, 338
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspPI	GGNCC	1 cut(s)	261
RsaI	GTAC	3 cut(s)	40, 345, 369
RsaNI	GTAC	3 cut(s)	39, 344, 368
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	9, 337
Sau3AI	GATC	2 cut(s)	231, 237
Sau96I	GGNCC	1 cut(s)	261
ScaI	AGTACT	2 cut(s)	40, 345
ScrFI	CCNGG	1 cut(s)	462
SetI	ASST	8 cut(s)	96, 162, 228, 288, 373, 433, 463, 542
SfaNI	GCATC	2 cut(s)	279, 297
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	3 cut(s)	74, 190, 395
SmoI	CTYRAG	3 cut(s)	74, 190, 395
Sse9I	AATT	4 cut(s)	210, 250, 363, 403
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	2 cut(s)	42, 107
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	1 cut(s)	129
TasI	AATT	4 cut(s)	210, 250, 363, 403
TatI	WGTACW	2 cut(s)	38, 343
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	4 cut(s)	118, 125, 309, 522
TseI	GCWGC	1 cut(s)	336
TspDTI	ATGAA	2 cut(s)	30, 467
TspRI	CASTG	4 cut(s)	118, 125, 309, 522
XagI	CCTNNNNNAGG	1 cut(s)	325
XapI	RAATTY	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	2 cut(s)	42, 107
ZrmI	AGTACT	2 cut(s)	40, 345
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.