Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000101.1

Orthogroup ID

OG0001698

Physical Location & Seq

Genomic Coordinates Reverse (-)

59944 .. 63952

Gene Structure 4009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000101.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgttgattctttcaagtggcgacgcttttgctgataaccacccacggcgaagccgcgaggtcgtagacgacgactccgacgactttgtagacgaccttgattcgctaaggtatctgttattggccacatcaaagcatgatgtatacctgatgcaaaacttttcagtaatgctttggaactctttgcacaggagaggcaccgaagtactcaatgtggctaaaccaattgtacctactgagaaacgaccttggttgttggcacgaccaccctctagagtgcagataagcactatggctgtcaaggaaaatttgttggttgctgggggcttccaagttgaactaatctacaagattggcacctgtttgatagctgatgctcagtctggaaaagctgtcgggggcttgaaagggcacttagactattgcttttcttcagcttggcacccggatggacgaatcttggctactgggaaccaagacactacctgtaggctatgggacataaggaacctgtcagagtccctagccgtgttgaagggaagaatgggaacaataagagctttaaaattcacctctgatggtcgttttatggccatgggtgagccagtagactttgttcacatcattgatacccagtccagatatgcaaagggacaagagattgatctgtttggtgagattgccggaatatccttcagcccctgtgaagcttctttgtttgttggagttgctgatcgcacatatggtagtgtattggagttcaataagaggcactataatccctatcaagaaatagtcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

267

Amino Acids

29.86

Weight (kDa)

5.98

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G78070 AT1G78070 AT1G78070
fragaria_vesca	FvH4_5g37830
malus_domestica	MD08G1180000.v1.1 MD15G1365300.v1.1
prunus_persica	Prupe.1G513500_v2.0.a1
pyrus_communis	pycom08g15410 pycom15g32770
rosa_chinensis	RchiOBHm_Chr7g0239721 RchiOBHm_Chr7g0239731 RchiOBHm_Chr7g0239761 RchiOBHm_Chr7g0239781 RchiOBHm_Chr7g0239801
rosa_laevigata	RLG00000000730 RLG00000000732 RLG00000029177
rosa_multiflora	Rmu_sc0000063.1_g000032 Rmu_sc0000063.1_g000033 Rmu_sc0000063.1_g000038 Rmu_sc0000101.1_g000005 Rmu_sc0000101.1_g000014 Rmu_sc0000101.1_g000017 Rmu_sc0000101.1_g000020 Rmu_sc0003622.1_g000011 Rmu_sc0004440.1_g000004 Rmu_sc0007193.1_g000002
rosa_roxburghii	Rroxscaffold_3G00220800 Rroxscaffold_3G00220820
rosa_rugosa	Rorug07G0328900.1 Rorug07G0329400
rosa_samantha	Rh7AG483100 Rh7AG483200 Rh7AG483300 Rh7AG483500 Rh7CG500900 Rh7CG501100
rosa_wichuraiana	Rw7G040440 Rw7G040470 Rw7G040480 Rw7G040520 Rw7G040540 Rw7G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	197, 356, 441
AccI	GTMKAC	4 cut(s)	66, 90, 144, 609
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	55
AcoI	YGGCCR	2 cut(s)	123, 591
AcsI	RAATTY	2 cut(s)	307, 566
AcuI	CTGAAG	2 cut(s)	417, 679
AfaI	GTAC	2 cut(s)	207, 231
AgsI	TTSAA	5 cut(s)	15, 338, 406, 535, 763
AluBI	AGCT	5 cut(s)	371, 392, 437, 560, 710
AluI	AGCT	5 cut(s)	371, 392, 437, 560, 710
AlwNI	CAGNNNCTG	1 cut(s)	702
AoxI	GGCC	2 cut(s)	123, 591
ApoI	RAATTY	2 cut(s)	307, 566
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	562, 611, 686
BaeGI	GKGCMC	1 cut(s)	414
BalI	TGGCCA	2 cut(s)	125, 593
BanI	GGYRCC	3 cut(s)	197, 356, 441
BbsI	GAAGAC	1 cut(s)	790
BccI	CCATC	2 cut(s)	443, 572
BceAI	ACGGC	2 cut(s)	62, 512
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BcnI	CCSGG	1 cut(s)	446
BfaI	CTAG	3 cut(s)	273, 524, 802
BfmI	CTRYAG	1 cut(s)	487
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
BmcAI	AGTACT	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	446
BmiI	GGNNCC	5 cut(s)	199, 358, 443, 473, 509
BmrFI	CCNGG	1 cut(s)	446
BmrI	ACTGGG	2 cut(s)	477, 628
BmsI	GCATC	2 cut(s)	141, 364
BmuI	ACTGGG	2 cut(s)	477, 628
BpiI	GAAGAC	1 cut(s)	790
Bpu10I	CCTNAGC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	446
BsaJI	CCNNGG	3 cut(s)	44, 248, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse1I	ACTGG	3 cut(s)	472, 605, 634
BseDI	CCNNGG	3 cut(s)	44, 248, 594
BseGI	GGATG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	228, 392
BseNI	ACTGG	3 cut(s)	472, 605, 634
BseSI	GKGCMC	1 cut(s)	414
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	125, 593
BshNI	GGYRCC	3 cut(s)	197, 356, 441
BsiSI	CCGG	2 cut(s)	446, 684
BslFI	GGGAC	3 cut(s)	505, 512, 666
BsmFI	GGGAC	3 cut(s)	505, 512, 666
BsnI	GGCC	2 cut(s)	125, 593
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	664, 733
Bsp19I	CCATGG	1 cut(s)	594
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	2 cut(s)	125, 593
BspCNI	CTCAG	2 cut(s)	229, 391
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	5 cut(s)	199, 358, 443, 473, 509
BspT107I	GGYRCC	3 cut(s)	197, 356, 441
BsrI	ACTGG	3 cut(s)	472, 605, 634
BssECI	CCNNGG	3 cut(s)	44, 248, 594
BssMI	GATC	2 cut(s)	664, 733
BssNAI	GTATAC	1 cut(s)	145
BssT1I	CCWWGG	2 cut(s)	248, 594
Bst1107I	GTATAC	1 cut(s)	145
BstDEI	CTNAG	4 cut(s)	107, 237, 378, 415
BstDSI	CCRYGG	2 cut(s)	44, 594
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	667, 736
BstMBI	GATC	2 cut(s)	664, 733
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	790
BstZ17I	GTATAC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	125, 593
BtgI	CCRYGG	2 cut(s)	44, 594
BtsCI	GGATG	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	702
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	206, 230
CviAII	CATG	2 cut(s)	137, 595
CviQI	GTAC	2 cut(s)	206, 230
DdeI	CTNAG	4 cut(s)	107, 237, 378, 415
DpnI	GATC	2 cut(s)	666, 735
DpnII	GATC	2 cut(s)	664, 733
DraI	TTTAAA	1 cut(s)	564
EaeI	YGGCCR	2 cut(s)	123, 591
Eco130I	CCWWGG	2 cut(s)	248, 594
Eco57I	CTGAAG	2 cut(s)	417, 679
EcoT14I	CCWWGG	2 cut(s)	248, 594
ErhI	CCWWGG	2 cut(s)	248, 594
FaeI	CATG	2 cut(s)	140, 598
FaqI	GGGAC	3 cut(s)	505, 512, 666
FatI	CATG	2 cut(s)	136, 594
FauNDI	CATATG	1 cut(s)	742
FblI	GTMKAC	4 cut(s)	66, 90, 144, 609
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	3 cut(s)	273, 524, 802
GluI	GCNGC	1 cut(s)	55
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	125, 593
HapII	CCGG	2 cut(s)	446, 684
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	140, 598
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	5 cut(s)	7, 74, 101, 456, 518
HpaII	CCGG	2 cut(s)	446, 684
HphI	GGTGA	3 cut(s)	562, 611, 686
Hpy166II	GTNNAC	5 cut(s)	67, 91, 145, 610, 619
Hpy188I	TCNGA	3 cut(s)	79, 517, 577
Hpy188III	TCNNGA	4 cut(s)	273, 384, 639, 788
Hpy8I	GTNNAC	5 cut(s)	67, 91, 145, 610, 619
Hpy99I	CGWCG	3 cut(s)	26, 74, 83
HpyAV	CCTTC	2 cut(s)	529, 703
HpyCH4V	TGCA	4 cut(s)	154, 187, 280, 647
HpyF3I	CTNAG	4 cut(s)	107, 237, 378, 415
Hsp92II	CATG	2 cut(s)	140, 598
Kzo9I	GATC	2 cut(s)	664, 733
LweI	GCATC	2 cut(s)	141, 364
MaeI	CTAG	3 cut(s)	273, 524, 802
MalI	GATC	2 cut(s)	666, 735
MboI	GATC	2 cut(s)	664, 733
MboII	GAAGA	3 cut(s)	423, 552, 790
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	414
MlsI	TGGCCA	2 cut(s)	125, 593
MluCI	AATT	3 cut(s)	225, 307, 566
MluNI	TGGCCA	2 cut(s)	125, 593
MlyI	GAGTC	2 cut(s)	68, 527
MmeI	TCCRAC	2 cut(s)	102, 703
MnlI	CCTC	5 cut(s)	52, 188, 280, 583, 762
Mox20I	TGGCCA	2 cut(s)	125, 593
MscI	TGGCCA	2 cut(s)	125, 593
MseI	TTAA	1 cut(s)	563
MslI	CAYNNNNRTG	1 cut(s)	447
Msp20I	TGGCCA	2 cut(s)	125, 593
MspI	CCGG	2 cut(s)	446, 684
MspR9I	CCNGG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	57
NciI	CCSGG	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	594
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	2 cut(s)	664, 733
NlaIII	CATG	2 cut(s)	140, 598
NlaIV	GGNNCC	5 cut(s)	199, 358, 443, 473, 509
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 75, 78
PfeI	GAWTC	3 cut(s)	7, 101, 456
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	2 cut(s)	68, 526
PpsI	GAGTC	2 cut(s)	68, 526
PspFI	CCCAGC	1 cut(s)	320
PspN4I	GGNNCC	5 cut(s)	199, 358, 443, 473, 509
PsrI	GAACNNNNNNTAC	2 cut(s)	600, 632
PstNI	CAGNNNCTG	1 cut(s)	702
RsaI	GTAC	2 cut(s)	207, 231
RsaNI	GTAC	2 cut(s)	206, 230
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	2 cut(s)	664, 733
ScaI	AGTACT	1 cut(s)	207
SchI	GAGTC	2 cut(s)	68, 527
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	2 cut(s)	141, 364
SfcI	CTRYAG	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	447
Sse9I	AATT	3 cut(s)	225, 307, 566
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	3 cut(s)	273, 524, 802
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	2 cut(s)	248, 594
TasI	AATT	3 cut(s)	225, 307, 566
TatI	WGTACW	1 cut(s)	205
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	3 cut(s)	7, 101, 456
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
XapI	RAATTY	2 cut(s)	307, 566
XbaI	TCTAGA	1 cut(s)	272
XmiI	GTMKAC	4 cut(s)	66, 90, 144, 609
XspI	CTAG	3 cut(s)	273, 524, 802
ZrmI	AGTACT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.