Rh7AG483200

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001698
Physical Location & Seq
Reverse (-)
68175078 .. 68179030
3953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG483200.1

Sequence Viewer

Length: 828 bp
ATGTTGATTCCTTCAAGTGGCGACGCTTTTGCTGATAACCACCCACGGCGAAGCCGCAAGGTCGTAGACGACGACTCCGACGACTTTGTTGACGACCTTGATTCGAGCAAGGAGTGCTTGCAAGTGGAGAAGGGGAGGAGTTTCTATGACTTCCAATACAACACAAGGCTTGTGAAGTTGACAATTGTGCATTTTCAGGGTGGAGTTAGAGCAGCTGGCGTGACTTTGGTTATATGGTATGATAGGAGAATATCTGAGCATTTAAGAGACCTCTGTAGCAAGTTAGCCATTCCTGTTATTGAAAAACGGCCAGGGTTGTTGGCACGACCACTCTCTAGAGTGCAGATAAGCACTATGGCTGTCAAGGAAAATTTGTTGGTTGCTGGGGGCTTCCTAGGTGAACTAATCTGCAAGCACATGAAACAACCTGGAGTTGCTTTCTGCTCAAAACTAACAACAGATGAGAATGCCATCACTAATGCAGTGGATATTTTTCAAAACCCAACTGGCTCAATGAGGGTAATGACTGCAAATGATGATGCTCAAGTTAGAGTTTTTGAAATTGAAAAGTTTGCTTGCCTAAATCGCTTCTCCTTCGGGTGGTCTGTAAATAACACCTCTGTTAGTCCTGATGGTAAGCTGCTCGCAGTACTTGGTGATAGTGCAGACTGTTTGATTGCTGAGACTCAGTCTGGTAAAGCTGTTGGGGGCCTCAAAGGGCACTTAGACTATTGCTTTTCTTCAGATTGGCACCCGGATGGACGAATCTTGGCTCCTGGGAACCAAGACACTACCTGTAGGCTATGGGACATAAGGAACCTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

275

Amino Acids

30.44

Weight (kDa)

6.08

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 120 - 273 4.6e-11 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 159 - 273 6.5e-08 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 164 - 274 5e-14 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 171 - 272 1.2e-08 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 171 - 273 3.3e-06 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 173 - 273 5.2e-12 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 173 - 272 3.8e-09 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 750
AccI GTMKAC 1 cut(s) 66
AciI CCGC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 1 cut(s) 370
AcuI CTGAAG 1 cut(s) 726
AfaI GTAC 1 cut(s) 651
AfiI CCNNNNNNNGG 2 cut(s) 17, 600
AgsI TTSAA 5 cut(s) 15, 302, 497, 560, 566
AjnI CCWGG 3 cut(s) 310, 427, 775
AluBI AGCT 3 cut(s) 215, 640, 701
AluI AGCT 3 cut(s) 215, 640, 701
Alw26I GTCTC 2 cut(s) 261, 677
AoxI GGCC 2 cut(s) 308, 709
ApeKI GCWGC 2 cut(s) 212, 640
ApoI RAATTY 1 cut(s) 370
AspA2I CCTAGG 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 709
AsuC2I CCSGG 1 cut(s) 755
AsuHPI GGTGA 2 cut(s) 410, 668
AvrII CCTAGG 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 723
BanI GGYRCC 1 cut(s) 750
BbvI GCAGC 2 cut(s) 224, 627
BccI CCATC 3 cut(s) 479, 626, 752
BceAI ACGGC 2 cut(s) 62, 323
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 3 cut(s) 312, 429, 777
BcnI CCSGG 1 cut(s) 755
BcoDI GTCTC 2 cut(s) 261, 677
BfaI CTAG 2 cut(s) 336, 395
BfmI CTRYAG 2 cut(s) 274, 796
BisI GCNGC 3 cut(s) 55, 213, 641
BlnI CCTAGG 1 cut(s) 394
BlsI GCNGC 3 cut(s) 56, 214, 642
BmcAI AGTACT 1 cut(s) 651
Bme1390I CCNGG 4 cut(s) 312, 429, 755, 777
BmgT120I GGNCC 1 cut(s) 709
BmiI GGNNCC 5 cut(s) 710, 752, 774, 782, 818
BmrFI CCNGG 4 cut(s) 312, 429, 755, 777
BmsI GCATC 1 cut(s) 529
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 755
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 4 cut(s) 44, 311, 394, 776
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 600
Bse1I ACTGG 1 cut(s) 511
BseBI CCWGG 3 cut(s) 312, 429, 777
BseDI CCNNGG 4 cut(s) 44, 311, 394, 776
BseGI GGATG 1 cut(s) 763
BseLI CCNNNNNNNGG 2 cut(s) 17, 600
BseMII CTCAG 3 cut(s) 246, 672, 701
BseNI ACTGG 1 cut(s) 511
BseRI GAGGAG 1 cut(s) 151
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 2 cut(s) 224, 627
BseYI CCCAGC 1 cut(s) 383
BsgI GTGCAG 2 cut(s) 362, 684
BshFI GGCC 2 cut(s) 310, 711
BshNI GGYRCC 1 cut(s) 750
BsiSI CCGG 1 cut(s) 755
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 2 cut(s) 17, 600
BsmAI GTCTC 2 cut(s) 261, 677
BsmFI GGGAC 1 cut(s) 821
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 2 cut(s) 310, 711
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 723
BspACI CCGC 1 cut(s) 55
BspANI GGCC 2 cut(s) 310, 711
BspCNI CTCAG 3 cut(s) 247, 673, 700
BspLI GGNNCC 5 cut(s) 710, 752, 774, 782, 818
BspT107I GGYRCC 1 cut(s) 750
BspTNI GGTCTC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 511
BssECI CCNNGG 4 cut(s) 44, 311, 394, 776
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 3 cut(s) 312, 429, 777
Bst4CI ACNGT 1 cut(s) 671
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 5 cut(s) 119, 217, 413, 577, 645
BstDEI CTNAG 4 cut(s) 255, 681, 687, 724
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 763
BstMAI GTCTC 2 cut(s) 261, 677
BstMWI GCNNNNNNNGC 2 cut(s) 114, 585
BstNI CCWGG 3 cut(s) 312, 429, 777
BstSCI CCNGG 4 cut(s) 310, 427, 753, 775
BstSFI CTRYAG 2 cut(s) 274, 796
BstSLI GKGCMC 1 cut(s) 723
BstV1I GCAGC 2 cut(s) 224, 627
BsuRI GGCC 2 cut(s) 310, 711
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 763
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 5 cut(s) 119, 217, 413, 577, 645
Cfr13I GGNCC 1 cut(s) 709
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 650
CviAII CATG 1 cut(s) 418
CviQI GTAC 1 cut(s) 650
DdeI CTNAG 4 cut(s) 255, 681, 687, 724
EaeI YGGCCR 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 709
EcoRII CCWGG 3 cut(s) 310, 427, 775
EcoT14I CCWWGG 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 1 cut(s) 421
FaiI YATR 9 cut(s) 147, 233, 235, 240, 356, 419, 805, 812, 826
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 1 cut(s) 821
FatI CATG 1 cut(s) 417
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 55, 213, 641
FokI GGATG 1 cut(s) 770
Fsp4HI GCNGC 3 cut(s) 55, 213, 641
FspBI CTAG 2 cut(s) 336, 395
GluI GCNGC 3 cut(s) 55, 213, 641
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 2 cut(s) 310, 711
HapII CCGG 1 cut(s) 755
HgaI GACGC 1 cut(s) 32
Hin1II CATG 1 cut(s) 421
HincII GTYRAC 2 cut(s) 91, 180
HindII GTYRAC 2 cut(s) 91, 180
HinfI GANTC 5 cut(s) 7, 74, 101, 685, 765
HpaII CCGG 1 cut(s) 755
HphI GGTGA 2 cut(s) 410, 668
Hpy166II GTNNAC 4 cut(s) 67, 91, 180, 401
Hpy188I TCNGA 3 cut(s) 79, 256, 745
Hpy188III TCNNGA 2 cut(s) 336, 629
Hpy8I GTNNAC 4 cut(s) 67, 91, 180, 401
Hpy99I CGWCG 3 cut(s) 26, 74, 83
HpyAV CCTTC 3 cut(s) 21, 124, 604
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4V TGCA 7 cut(s) 121, 190, 343, 411, 482, 530, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 585
HpyF3I CTNAG 4 cut(s) 255, 681, 687, 724
Hsp92II CATG 1 cut(s) 421
LmnI GCTCC 1 cut(s) 778
Lsp1109I GCAGC 2 cut(s) 224, 627
LweI GCATC 1 cut(s) 529
MaeI CTAG 2 cut(s) 336, 395
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 1 cut(s) 732
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 3 cut(s) 183, 370, 561
MlyI GAGTC 2 cut(s) 68, 679
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 5 cut(s) 129, 281, 510, 628, 722
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 755
MspR9I CCNGG 4 cut(s) 312, 429, 755, 777
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 472
MvaI CCWGG 3 cut(s) 312, 429, 777
MwoI GCNNNNNNNGC 2 cut(s) 114, 585
NciI CCSGG 1 cut(s) 755
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 5 cut(s) 710, 752, 774, 782, 818
NmuCI GTSAC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 75, 78
PctI GAATGC 1 cut(s) 472
PfeI GAWTC 3 cut(s) 7, 101, 765
PflFI GACNNNGTC 1 cut(s) 688
PkrI GCNGC 3 cut(s) 56, 214, 642
PleI GAGTC 2 cut(s) 68, 679
PpsI GAGTC 2 cut(s) 68, 679
Psp6I CCWGG 3 cut(s) 310, 427, 775
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 3 cut(s) 310, 427, 775
PspN4I GGNNCC 5 cut(s) 710, 752, 774, 782, 818
PspPI GGNCC 1 cut(s) 709
PsyI GACNNNGTC 1 cut(s) 688
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 651
RsaNI GTAC 1 cut(s) 650
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 3 cut(s) 55, 213, 641
Sau96I GGNCC 1 cut(s) 709
ScaI AGTACT 1 cut(s) 651
SchI GAGTC 2 cut(s) 68, 679
ScrFI CCNGG 4 cut(s) 312, 429, 755, 777
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 2 cut(s) 274, 796
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 3 cut(s) 183, 370, 561
SsiI CCGC 1 cut(s) 55
SspMI CTAG 2 cut(s) 336, 395
StyD4I CCNGG 4 cut(s) 310, 427, 753, 775
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 671
TaqI TCGA 1 cut(s) 104
TasI AATT 3 cut(s) 183, 370, 561
TatI WGTACW 1 cut(s) 649
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 3 cut(s) 7, 101, 765
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 489
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 212, 640
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 434
TspRI CASTG 1 cut(s) 489
Tth111I GACNNNGTC 1 cut(s) 688
XapI RAATTY 1 cut(s) 370
XbaI TCTAGA 1 cut(s) 335
XmaJI CCTAGG 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 2 cut(s) 336, 395
ZrmI AGTACT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.