Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001698

Physical Location & Seq

Genomic Coordinates Reverse (-)

68180625 .. 68184366

Gene Structure 3742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG483300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGACCTGGAAAGCATTTGCTCCTCCTTCACAACTTCCACCGTCTCAGACTGCCCCCAAATTCCGATGCGTCTTGCATCAGACTGCCCCCAACTTGGCGGTCTCCTTCTCCCTCAGTTCCGTCTTCACCTCTGCCAACCTCATCGCCATCGCCGCCTCCAGCTTCGGCTTTCTCCCCGGCGCCGTCACCTCCACCATCACTCAAGTCGCTGTCACTGCCGTCACCATCGCTTCCACTAAAGAGTGCTTGCAAGTGGAGAAAGGGAAGAGTTTCTATGACTTTCACTACAACACAAGGCTTGTGAAGTCGACAATTGTGCATTTTCAGCTAAGGTATCTGTTATGGGCCACATCAAAGCATGATGTATACCTGATGCAGAACTTTTCAGTAATGCATTGGAACTCTTTGCACAGGAGAGGCACCGAGGTACTCAATGCGGCTAAACCAATTGTACCTACTGAGAAACGACCTGGGTTGTTGGCACGACCACTCTCTAGAGTGCAAATAAGCACTATGGCTGTCAAGGACAATTTGTTGGTTGCTGGGGGCTTCCAAGGTGAACTAATCTGCAAGCACATGAAACAACCTGGAGTTGCTTTCTGCTCAAAACTAACAACAGATGAGAACTATTGCAGTGGATATTTTTCGAAAGGCATTTGGCTCAATGAGGGTAATGACTGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

228

Amino Acids

25.18

Weight (kDa)

9.53

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G78070 AT1G78070 AT1G78070
fragaria_vesca	FvH4_5g37830
malus_domestica	MD08G1180000.v1.1 MD15G1365300.v1.1
prunus_persica	Prupe.1G513500_v2.0.a1
pyrus_communis	pycom08g15410 pycom15g32770
rosa_chinensis	RchiOBHm_Chr7g0239721 RchiOBHm_Chr7g0239731 RchiOBHm_Chr7g0239761 RchiOBHm_Chr7g0239781 RchiOBHm_Chr7g0239801
rosa_laevigata	RLG00000000730 RLG00000000732 RLG00000029177
rosa_multiflora	Rmu_sc0000063.1_g000032 Rmu_sc0000063.1_g000033 Rmu_sc0000063.1_g000038 Rmu_sc0000101.1_g000005 Rmu_sc0000101.1_g000014 Rmu_sc0000101.1_g000017 Rmu_sc0000101.1_g000020 Rmu_sc0003622.1_g000011 Rmu_sc0004440.1_g000004 Rmu_sc0007193.1_g000002
rosa_roxburghii	Rroxscaffold_3G00220800 Rroxscaffold_3G00220820
rosa_rugosa	Rorug07G0328900.1 Rorug07G0329400
rosa_samantha	Rh7AG483100 Rh7AG483200 Rh7AG483300 Rh7AG483500 Rh7CG500900 Rh7CG501100
rosa_wichuraiana	Rw7G040440 Rw7G040470 Rw7G040480 Rw7G040520 Rw7G040540 Rw7G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	179, 419
AccI	GTMKAC	2 cut(s)	308, 366
AciI	CCGC	3 cut(s)	98, 153, 437
AcsI	RAATTY	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	2 cut(s)	429, 453
AfiI	CCNNNNNNNGG	1 cut(s)	94
AjnI	CCWGG	3 cut(s)	5, 469, 586
AluBI	AGCT	2 cut(s)	162, 328
AluI	AGCT	2 cut(s)	162, 328
Alw26I	GTCTC	2 cut(s)	48, 106
AoxI	GGCC	1 cut(s)	345
ApoI	RAATTY	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	4 cut(s)	118, 178, 214, 569
AsuII	TTCGAA	1 cut(s)	647
BanI	GGYRCC	2 cut(s)	179, 419
BbsI	GAAGAC	1 cut(s)	115
BccI	CCATC	3 cut(s)	155, 203, 233
BceAI	ACGGC	2 cut(s)	167, 203
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	3 cut(s)	7, 471, 588
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	48, 106
BfaI	CTAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	2 cut(s)	153, 438
BlsI	GCNGC	2 cut(s)	154, 439
Bme1390I	CCNGG	4 cut(s)	7, 177, 471, 588
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	2 cut(s)	181, 421
BmrFI	CCNGG	4 cut(s)	7, 177, 471, 588
BmsI	GCATC	3 cut(s)	56, 85, 363
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	2 cut(s)	142, 609
Bpu10I	CCTNAGC	1 cut(s)	329
Bpu14I	TTCGAA	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	4 cut(s)	175, 423, 470, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseBI	CCWGG	3 cut(s)	7, 471, 588
BseDI	CCNNGG	4 cut(s)	175, 423, 470, 553
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	3 cut(s)	59, 127, 450
BseRI	GAGGAG	1 cut(s)	12
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	2 cut(s)	179, 419
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	48, 106
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	347
Bso31I	GGTCTC	1 cut(s)	106
Bsp119I	TTCGAA	1 cut(s)	647
BspACI	CCGC	3 cut(s)	98, 153, 437
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	3 cut(s)	58, 126, 451
BspLI	GGNNCC	2 cut(s)	181, 421
BspT104I	TTCGAA	1 cut(s)	647
BspT107I	GGYRCC	2 cut(s)	179, 419
BspTNI	GGTCTC	1 cut(s)	106
BssECI	CCNNGG	4 cut(s)	175, 423, 470, 553
BssNAI	GTATAC	1 cut(s)	367
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	553
Bst1107I	GTATAC	1 cut(s)	367
Bst2UI	CCWGG	3 cut(s)	7, 471, 588
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	647
BstC8I	GCNNGC	2 cut(s)	248, 572
BstDEI	CTNAG	4 cut(s)	45, 113, 329, 459
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstMAI	GTCTC	2 cut(s)	48, 106
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 215, 325
BstNI	CCWGG	3 cut(s)	7, 471, 588
BstSCI	CCNGG	4 cut(s)	5, 175, 469, 586
BstV2I	GAAGAC	1 cut(s)	115
BstZ17I	GTATAC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	347
BtgZI	GCGATG	3 cut(s)	127, 133, 211
BtsI	GCAGTG	2 cut(s)	213, 640
BtsIMutI	CAGTG	2 cut(s)	213, 640
Cac8I	GCNNGC	2 cut(s)	248, 572
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	428, 452
CviAII	CATG	2 cut(s)	359, 577
CviJI	RGCY	9 cut(s)	162, 168, 298, 328, 347, 440, 518, 549, 661
CviKI_1	RGCY	9 cut(s)	162, 168, 298, 328, 347, 440, 518, 549, 661
CviQI	GTAC	2 cut(s)	428, 452
DdeI	CTNAG	4 cut(s)	45, 113, 329, 459
DinI	GGCGCC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	553
Eco31I	GGTCTC	1 cut(s)	106
EcoRII	CCWGG	3 cut(s)	5, 469, 586
EcoT14I	CCWWGG	1 cut(s)	553
EcoT22I	ATGCAT	1 cut(s)	396
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	553
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	2 cut(s)	362, 580
FaiI	YATR	6 cut(s)	276, 343, 360, 367, 515, 578
FatI	CATG	2 cut(s)	358, 576
FblI	GTMKAC	2 cut(s)	308, 366
Fnu4HI	GCNGC	2 cut(s)	153, 438
Fsp4HI	GCNGC	2 cut(s)	153, 438
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	153, 438
GsaI	CCCAGC	1 cut(s)	546
GsuI	CTGGAG	2 cut(s)	142, 609
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	362, 580
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	4 cut(s)	118, 178, 214, 569
Hpy166II	GTNNAC	3 cut(s)	309, 367, 560
Hpy188I	TCNGA	3 cut(s)	48, 65, 81
Hpy188III	TCNNGA	1 cut(s)	495
Hpy8I	GTNNAC	3 cut(s)	309, 367, 560
HpyAV	CCTTC	2 cut(s)	36, 115
HpyCH4III	ACNGT	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 215, 325
HpyF3I	CTNAG	4 cut(s)	45, 113, 329, 459
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	362, 580
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
LmnI	GCTCC	1 cut(s)	25
LweI	GCATC	3 cut(s)	56, 85, 363
MaeI	CTAG	1 cut(s)	495
MaeIII	GTNAC	3 cut(s)	184, 211, 220
MboII	GAAGA	2 cut(s)	115, 277
MfeI	CAATTG	2 cut(s)	312, 447
MluCI	AATT	4 cut(s)	59, 312, 447, 529
Mly113I	GGCGCC	1 cut(s)	180
MnlI	CCTC	9 cut(s)	33, 122, 139, 149, 166, 199, 410, 418, 661
Mph1103I	ATGCAT	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	269
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	4 cut(s)	7, 177, 471, 588
MunI	CAATTG	2 cut(s)	312, 447
MvaI	CCWGG	3 cut(s)	7, 471, 588
MwoI	GCNNNNNNNGC	3 cut(s)	152, 215, 325
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	177
NlaIII	CATG	2 cut(s)	362, 580
NlaIV	GGNNCC	2 cut(s)	181, 421
NmuCI	GTSAC	3 cut(s)	184, 211, 220
NsiI	ATGCAT	1 cut(s)	396
NspV	TTCGAA	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	154, 439
PluTI	GGCGCC	1 cut(s)	183
Psp6I	CCWGG	3 cut(s)	5, 469, 586
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	3 cut(s)	5, 469, 586
PspN4I	GGNNCC	2 cut(s)	181, 421
PspPI	GGNCC	1 cut(s)	345
RsaI	GTAC	2 cut(s)	429, 453
RsaNI	GTAC	2 cut(s)	428, 452
SalI	GTCGAC	1 cut(s)	307
SatI	GCNGC	2 cut(s)	153, 438
Sau96I	GGNCC	1 cut(s)	345
ScrFI	CCNGG	4 cut(s)	7, 177, 471, 588
SfaNI	GCATC	3 cut(s)	56, 85, 363
SfoI	GGCGCC	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	4 cut(s)	59, 312, 447, 529
SsiI	CCGC	3 cut(s)	98, 153, 437
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	4 cut(s)	5, 175, 469, 586
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	308, 647
TasI	AATT	4 cut(s)	59, 312, 447, 529
TauI	GCSGC	2 cut(s)	155, 440
TscAI	CASTG	2 cut(s)	220, 640
TseFI	GTSAC	3 cut(s)	184, 211, 220
Tsp45I	GTSAC	3 cut(s)	184, 211, 220
TspDTI	ATGAA	1 cut(s)	593
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	220, 640
XapI	RAATTY	1 cut(s)	59
XbaI	TCTAGA	1 cut(s)	494
XmiI	GTMKAC	2 cut(s)	308, 366
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.