RLG00000029177

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001698
Physical Location & Seq
Reverse (-)
34100123 .. 34102328
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029177

Sequence Viewer

Length: 342 bp
ATGACCTGGAAAGCACAGCAATGCCCTCATGCCAAAGCTCAAGCTCCTCCTCTGTCCACGGCTGTTGGGGGCCTCAAAGGGCACTTAGACTATTGCTTTCCTTCAGCTTGGCACCCAGATGGACGAATCTTGGCTACTGGGAACCAAGACACTTCCTTCCGGATATGCAAACTTGCAAAGGGACAAGAAATTGATCTGTTTGGTGAGATTGCCGGAATATCCTTCAGCCCCGACTCTGAAGCTTTGTTTGTTGGGGTTGCTGATCGCACATATGGTAGTGTATTCGAGTTCAATAAGAGGCACTATAATGAGTGTAATCCCTATCAAGAAATAGTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

114

Amino Acids

12.51

Weight (kDa)

6.03

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 159
AcuI CTGAAG 3 cut(s) 87, 208, 258
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 4 cut(s) 38, 44, 107, 242
AluI AGCT 4 cut(s) 38, 44, 107, 242
Aor13HI TCCGGA 1 cut(s) 159
AoxI GGCC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 328
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 7
BfaI CTAG 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 71, 113, 143
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 26
BseAI TCCGGA 1 cut(s) 159
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 36, 39
BseSI GKGCMC 1 cut(s) 84
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 111
BsiSI CCGG 2 cut(s) 160, 213
BslFI GGGAC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 84
Bsp13I TCCGGA 1 cut(s) 159
Bsp143I GATC 2 cut(s) 193, 262
BspANI GGCC 1 cut(s) 72
BspEI TCCGGA 1 cut(s) 159
BspLI GGNNCC 3 cut(s) 71, 113, 143
BspT107I GGYRCC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 26
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 2 cut(s) 193, 262
Bst2UI CCWGG 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 85
BstDSI CCRYGG 1 cut(s) 57
BstKTI GATC 2 cut(s) 196, 265
BstMBI GATC 2 cut(s) 193, 262
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstSLI GKGCMC 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 328
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 70
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 1 cut(s) 29
CviJI RGCY 8 cut(s) 38, 44, 62, 72, 107, 134, 228, 242
CviKI_1 RGCY 8 cut(s) 38, 44, 62, 72, 107, 134, 228, 242
DdeI CTNAG 1 cut(s) 85
DpnI GATC 2 cut(s) 195, 264
DpnII GATC 2 cut(s) 193, 262
Eco57I CTGAAG 3 cut(s) 87, 208, 258
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 5
FaeI CATG 1 cut(s) 32
FaiI YATR 5 cut(s) 30, 166, 271, 273, 306
FaqI GGGAC 1 cut(s) 195
FatI CATG 1 cut(s) 28
FauNDI CATATG 1 cut(s) 271
FspBI CTAG 1 cut(s) 340
HaeIII GGCC 1 cut(s) 72
HapII CCGG 2 cut(s) 160, 213
Hin1II CATG 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 2 cut(s) 126, 233
HpaII CCGG 2 cut(s) 160, 213
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 160, 326
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 3 cut(s) 111, 166, 232
HpyCH4V TGCA 2 cut(s) 168, 176
HpyF3I CTNAG 1 cut(s) 85
Hsp92II CATG 1 cut(s) 32
Kpn2I TCCGGA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 193, 262
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 5 cut(s) 19, 123, 129, 173, 226
MaeI CTAG 1 cut(s) 340
MalI GATC 2 cut(s) 195, 264
MboI GATC 2 cut(s) 193, 262
MboII GAAGA 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 189
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 5 cut(s) 36, 57, 60, 83, 291
MroI TCCGGA 1 cut(s) 159
MslI CAYNNNNRTG 3 cut(s) 19, 117, 306
MspI CCGG 2 cut(s) 160, 213
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
NdeI CATATG 1 cut(s) 271
NdeII GATC 2 cut(s) 193, 262
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 3 cut(s) 71, 113, 143
PfeI GAWTC 1 cut(s) 126
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 3 cut(s) 71, 113, 143
PspPI GGNCC 1 cut(s) 70
RseI CAYNNNNRTG 3 cut(s) 19, 117, 306
Sau3AI GATC 2 cut(s) 193, 262
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 84
SetI ASST 5 cut(s) 8, 40, 46, 109, 244
SmiMI CAYNNNNRTG 3 cut(s) 19, 117, 306
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 1 cut(s) 189
SspMI CTAG 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 5
TaqI TCGA 1 cut(s) 285
TasI AATT 1 cut(s) 189
TfiI GAWTC 1 cut(s) 126
XspI CTAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.