Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000101.1

Orthogroup ID

OG0001698

Physical Location & Seq

Genomic Coordinates Reverse (-)

102060 .. 103378

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000101.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgcagaacttctcagtgatgcattgcaactctttgcacaggagaggcagcgaagtactcaatgtggccaaaccaattaaacaacctgggttgttggcacgaccactctctagagtgcagatgagcattatggctctcaaggacaatttgttggttgctgtgggcttccaaggtgaactaatctgcaagcacatgaaacaacctggagttgctttctcaaaactaacgacagatgagaatgccatcactaatgcagtggatattttccaaaacccacctggctcaatgagggtaacgactgcaaataatgatgcccaagttcgcttgcgtcaaccgcttctccttggagtgaacacttctgttagtcctgatggtaagctgctcgcagtgcttggtgatagtgcagactgtttgatagctgatgctcagtctggaaaagctgtcgggggcctcaaagggcacttagactattgcttttcctcagcttggcacccggatgggcgaatcttagctactgggaaccaagacactacttgcaggttatgggacataaggaacctgtcagagtccctagtcgtgttgaagggaagaatgggagcagtaagggctataaaatacacctctgatggtcgttttatggccatggctgagccagcagactttgttcacatcattgatacccagtccggatatgcaaaggaacaagagattgatctgtttggtgagattgccggaatatccttcagccccgactctgaagctttgtttattggggttgctgatcgcacgtatggtagtgtattggagttcaataagaggcactataatacctatgaagaaatagtcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

283

Amino Acids

30.92

Weight (kDa)

6.38

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G78070 AT1G78070 AT1G78070
fragaria_vesca	FvH4_5g37830
malus_domestica	MD08G1180000.v1.1 MD15G1365300.v1.1
prunus_persica	Prupe.1G513500_v2.0.a1
pyrus_communis	pycom08g15410 pycom15g32770
rosa_chinensis	RchiOBHm_Chr7g0239721 RchiOBHm_Chr7g0239731 RchiOBHm_Chr7g0239761 RchiOBHm_Chr7g0239781 RchiOBHm_Chr7g0239801
rosa_laevigata	RLG00000000730 RLG00000000732 RLG00000029177
rosa_multiflora	Rmu_sc0000063.1_g000032 Rmu_sc0000063.1_g000033 Rmu_sc0000063.1_g000038 Rmu_sc0000101.1_g000005 Rmu_sc0000101.1_g000014 Rmu_sc0000101.1_g000017 Rmu_sc0000101.1_g000020 Rmu_sc0003622.1_g000011 Rmu_sc0004440.1_g000004 Rmu_sc0007193.1_g000002
rosa_roxburghii	Rroxscaffold_3G00220800 Rroxscaffold_3G00220820
rosa_rugosa	Rorug07G0328900.1 Rorug07G0329400
rosa_samantha	Rh7AG483100 Rh7AG483200 Rh7AG483300 Rh7AG483500 Rh7CG500900 Rh7CG501100
rosa_wichuraiana	Rw7G040440 Rw7G040470 Rw7G040480 Rw7G040520 Rw7G040540 Rw7G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	489
AccIII	TCCGGA	1 cut(s)	686
AciI	CCGC	1 cut(s)	335
AcoI	YGGCCR	2 cut(s)	66, 639
AcuI	CTGAAG	2 cut(s)	727, 777
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	583, 811
AjnI	CCWGG	3 cut(s)	85, 202, 277
AluBI	AGCT	6 cut(s)	379, 419, 440, 485, 512, 761
AluI	AGCT	6 cut(s)	379, 419, 440, 485, 512, 761
Aor13HI	TCCGGA	1 cut(s)	686
AoxI	GGCC	3 cut(s)	66, 448, 639
ApeKI	GCWGC	2 cut(s)	48, 379
AspS9I	GGNCC	1 cut(s)	448
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	3 cut(s)	185, 407, 734
BaeGI	GKGCMC	1 cut(s)	462
BalI	TGGCCA	2 cut(s)	68, 641
BanI	GGYRCC	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	838
BbvCI	CCTCAGC	1 cut(s)	481
BbvI	GCAGC	2 cut(s)	60, 366
BccI	CCATC	4 cut(s)	251, 365, 491, 620
BciT130I	CCWGG	3 cut(s)	87, 204, 279
BcnI	CCSGG	1 cut(s)	494
BfaI	CTAG	3 cut(s)	111, 572, 850
BfuAI	ACCTGC	1 cut(s)	528
BisI	GCNGC	2 cut(s)	49, 380
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	2 cut(s)	50, 381
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	4 cut(s)	87, 204, 279, 494
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	4 cut(s)	449, 491, 521, 557
BmrFI	CCNGG	4 cut(s)	87, 204, 279, 494
BmrI	ACTGGG	2 cut(s)	525, 676
BmsI	GCATC	3 cut(s)	9, 301, 412
BmuI	ACTGGG	2 cut(s)	525, 676
BpiI	GAAGAC	1 cut(s)	838
BpmI	CTGGAG	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	481
Bpu1102I	GCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	494
BsaAI	YACGTR	1 cut(s)	789
BsaJI	CCNNGG	4 cut(s)	86, 169, 343, 642
BsaWI	WCCGGW	1 cut(s)	686
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	2 cut(s)	520, 682
Bse3DI	GCAATG	1 cut(s)	22
BseAI	TCCGGA	1 cut(s)	686
BseBI	CCWGG	3 cut(s)	87, 204, 279
BseDI	CCNNGG	4 cut(s)	86, 169, 343, 642
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	4 cut(s)	27, 440, 495, 639
BseNI	ACTGG	2 cut(s)	520, 682
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	60, 366
BsgI	GTGCAG	2 cut(s)	137, 423
BshFI	GGCC	3 cut(s)	68, 450, 641
BshNI	GGYRCC	1 cut(s)	489
BsiSI	CCGG	3 cut(s)	494, 687, 732
BslFI	GGGAC	2 cut(s)	553, 560
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmFI	GGGAC	2 cut(s)	553, 560
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	3 cut(s)	68, 450, 641
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp13I	TCCGGA	1 cut(s)	686
Bsp143I	GATC	2 cut(s)	712, 781
Bsp1720I	GCTNAGC	1 cut(s)	648
Bsp19I	CCATGG	1 cut(s)	642
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	3 cut(s)	68, 450, 641
BspCNI	CTCAG	4 cut(s)	26, 439, 494, 640
BspEI	TCCGGA	1 cut(s)	686
BspLI	GGNNCC	4 cut(s)	449, 491, 521, 557
BspMI	ACCTGC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	489
BsrDI	GCAATG	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	520, 682
BssECI	CCNNGG	4 cut(s)	86, 169, 343, 642
BssMI	GATC	2 cut(s)	712, 781
BssT1I	CCWWGG	3 cut(s)	169, 343, 642
Bst2UI	CCWGG	3 cut(s)	87, 204, 279
Bst4CI	ACNGT	1 cut(s)	410
BstBAI	YACGTR	1 cut(s)	789
BstC8I	GCNNGC	4 cut(s)	188, 326, 384, 654
BstDEI	CTNAG	6 cut(s)	13, 426, 463, 481, 508, 648
BstDSI	CCRYGG	1 cut(s)	642
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	2 cut(s)	715, 784
BstMBI	GATC	2 cut(s)	712, 781
BstMWI	GCNNNNNNNGC	4 cut(s)	334, 388, 605, 653
BstNI	CCWGG	3 cut(s)	87, 204, 279
BstSCI	CCNGG	4 cut(s)	85, 202, 277, 492
BstSLI	GKGCMC	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	60, 366
BstV2I	GAAGAC	1 cut(s)	838
BsuRI	GGCC	3 cut(s)	68, 450, 641
BtgI	CCRYGG	1 cut(s)	642
BtsCI	GGATG	1 cut(s)	502
BtsI	GCAGTG	2 cut(s)	261, 393
BtsIMutI	CAGTG	3 cut(s)	21, 261, 393
BveI	ACCTGC	1 cut(s)	528
Cac8I	GCNNGC	4 cut(s)	188, 326, 384, 654
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	2 cut(s)	193, 643
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	6 cut(s)	13, 426, 463, 481, 508, 648
DpnI	GATC	2 cut(s)	714, 783
DpnII	GATC	2 cut(s)	712, 781
EaeI	YGGCCR	2 cut(s)	66, 639
Eco130I	CCWWGG	3 cut(s)	169, 343, 642
Eco57I	CTGAAG	2 cut(s)	727, 777
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	85, 202, 277
EcoT14I	CCWWGG	3 cut(s)	169, 343, 642
EcoT22I	ATGCAT	1 cut(s)	24
ErhI	CCWWGG	3 cut(s)	169, 343, 642
FaeI	CATG	2 cut(s)	196, 646
FaqI	GGGAC	2 cut(s)	553, 560
FatI	CATG	2 cut(s)	192, 642
Fnu4HI	GCNGC	2 cut(s)	49, 380
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	2 cut(s)	49, 380
FspBI	CTAG	3 cut(s)	111, 572, 850
GluI	GCNGC	2 cut(s)	49, 380
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	68, 450, 641
HapII	CCGG	3 cut(s)	494, 687, 732
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	196, 646
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HindIII	AAGCTT	1 cut(s)	759
HinfI	GANTC	3 cut(s)	504, 566, 752
HpaII	CCGG	3 cut(s)	494, 687, 732
HphI	GGTGA	3 cut(s)	185, 407, 734
Hpy166II	GTNNAC	4 cut(s)	176, 332, 352, 667
Hpy188I	TCNGA	3 cut(s)	565, 625, 757
Hpy188III	TCNNGA	4 cut(s)	111, 368, 432, 687
Hpy8I	GTNNAC	4 cut(s)	176, 332, 352, 667
HpyAV	CCTTC	2 cut(s)	577, 751
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	1 cut(s)	788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	334, 388, 605, 653
HpyF3I	CTNAG	6 cut(s)	13, 426, 463, 481, 508, 648
HpySE526I	ACGT	1 cut(s)	788
Hsp92II	CATG	2 cut(s)	196, 646
Kpn2I	TCCGGA	1 cut(s)	686
Kzo9I	GATC	2 cut(s)	712, 781
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	2 cut(s)	60, 366
LweI	GCATC	3 cut(s)	9, 301, 412
MaeI	CTAG	3 cut(s)	111, 572, 850
MaeII	ACGT	1 cut(s)	788
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	714, 783
MboI	GATC	2 cut(s)	712, 781
MboII	GAAGA	3 cut(s)	600, 838, 848
MhlI	GDGCHC	1 cut(s)	462
MlsI	TGGCCA	2 cut(s)	68, 641
MluCI	AATT	2 cut(s)	75, 145
MluNI	TGGCCA	2 cut(s)	68, 641
MlyI	GAGTC	2 cut(s)	575, 746
MnlI	CCTC	6 cut(s)	38, 282, 461, 490, 631, 810
Mox20I	TGGCCA	2 cut(s)	68, 641
Mph1103I	ATGCAT	1 cut(s)	24
MroI	TCCGGA	1 cut(s)	686
MscI	TGGCCA	2 cut(s)	68, 641
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	495
Msp20I	TGGCCA	2 cut(s)	68, 641
MspI	CCGG	3 cut(s)	494, 687, 732
MspR9I	CCNGG	4 cut(s)	87, 204, 279, 494
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	3 cut(s)	87, 204, 279
MwoI	GCNNNNNNNGC	4 cut(s)	334, 388, 605, 653
NciI	CCSGG	1 cut(s)	494
NcoI	CCATGG	1 cut(s)	642
NdeII	GATC	2 cut(s)	712, 781
NlaIII	CATG	2 cut(s)	196, 646
NlaIV	GGNNCC	4 cut(s)	449, 491, 521, 557
NsiI	ATGCAT	1 cut(s)	24
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	504
PkrI	GCNGC	2 cut(s)	50, 381
PleI	GAGTC	2 cut(s)	574, 746
PpsI	GAGTC	2 cut(s)	574, 746
Ppu21I	YACGTR	1 cut(s)	789
Psp6I	CCWGG	3 cut(s)	85, 202, 277
PspGI	CCWGG	3 cut(s)	85, 202, 277
PspN4I	GGNNCC	4 cut(s)	449, 491, 521, 557
PspPI	GGNCC	1 cut(s)	448
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	49, 380
Sau3AI	GATC	2 cut(s)	712, 781
Sau96I	GGNCC	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	57
SchI	GAGTC	2 cut(s)	575, 746
ScrFI	CCNGG	4 cut(s)	87, 204, 279, 494
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	3 cut(s)	9, 301, 412
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	75, 145
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	3 cut(s)	111, 572, 850
StyD4I	CCNGG	4 cut(s)	85, 202, 277, 492
StyI	CCWWGG	3 cut(s)	169, 343, 642
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	1 cut(s)	791
TasI	AATT	2 cut(s)	75, 145
TatI	WGTACW	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	3 cut(s)	21, 261, 393
TseI	GCWGC	2 cut(s)	48, 379
TspDTI	ATGAA	2 cut(s)	209, 849
TspRI	CASTG	3 cut(s)	21, 261, 393
XbaI	TCTAGA	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	3 cut(s)	111, 572, 850
ZrmI	AGTACT	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.