Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004440.1

Orthogroup ID

OG0001698

Physical Location & Seq

Genomic Coordinates Forward (+)

25185 .. 28732

Gene Structure 3548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004440.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ctgttcctccaattccaggtttcaatggcgtatttccagaacgatgacctcgagtacgtcgtcaacgactactacggcgacgtcgttgagtttgaggaagacaacgacgcttttgctgataaccagccccggcgaagccttgaggtcgtagactccgactccgactccgacgacgactttgaagacgaccttgattcgagccaggtgaagagtgatacatcggctttggaagctagaaatggaaaggatatacagggaataccatgggagaggcttaatttcacaagagataagtaccgtgaggcgcgattgaagcagtataagaactatgagagcctcggtcggcctcgtcaagacctcgagaaggagtgcttgcaagtggagaaggggaaaagtttctatgactttcactacaacacaaggcttgtgaagtcgacaattgtgcattttcagctaaggaatttgttatgggccacatcaaagcatgatgtatacctgatgcagaacttctcagtgatgcattggaactctttgcacaggagaggcagcgaagtactcaatgtggccaaaccaattgtacctaccgagaaacaacctgggttgttggcacgaccactctctagagtgcagataagcactatggctgtcaaggacaatttgttggttgctgggggcttccaaggtgaactaatctgcaagcacatgaaacaacctggagttgctttctgctcaaaactaacaacagatgagaatgccatcactaatgcagtggatattttccaaaacccaacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

264

Amino Acids

30.48

Weight (kDa)

5.06

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G78070 AT1G78070 AT1G78070
fragaria_vesca	FvH4_5g37830
malus_domestica	MD08G1180000.v1.1 MD15G1365300.v1.1
prunus_persica	Prupe.1G513500_v2.0.a1
pyrus_communis	pycom08g15410 pycom15g32770
rosa_chinensis	RchiOBHm_Chr7g0239721 RchiOBHm_Chr7g0239731 RchiOBHm_Chr7g0239761 RchiOBHm_Chr7g0239781 RchiOBHm_Chr7g0239801
rosa_laevigata	RLG00000000730 RLG00000000732 RLG00000029177
rosa_multiflora	Rmu_sc0000063.1_g000032 Rmu_sc0000063.1_g000033 Rmu_sc0000063.1_g000038 Rmu_sc0000101.1_g000005 Rmu_sc0000101.1_g000014 Rmu_sc0000101.1_g000017 Rmu_sc0000101.1_g000020 Rmu_sc0003622.1_g000011 Rmu_sc0004440.1_g000004 Rmu_sc0007193.1_g000002
rosa_roxburghii	Rroxscaffold_3G00220800 Rroxscaffold_3G00220820
rosa_rugosa	Rorug07G0328900.1 Rorug07G0329400
rosa_samantha	Rh7AG483100 Rh7AG483200 Rh7AG483300 Rh7AG483500 Rh7CG500900 Rh7CG501100
rosa_wichuraiana	Rw7G040440 Rw7G040470 Rw7G040480 Rw7G040520 Rw7G040540 Rw7G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
AccI	GTMKAC	3 cut(s)	150, 434, 492
AccII	CGCG	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	1 cut(s)	460
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	4 cut(s)	56, 296, 555, 579
AfiI	CCNNNNNNNGG	2 cut(s)	16, 364
AgsI	TTSAA	3 cut(s)	24, 182, 313
AjnI	CCWGG	4 cut(s)	15, 201, 595, 712
AluBI	AGCT	2 cut(s)	233, 454
AluI	AGCT	2 cut(s)	233, 454
Ama87I	CYCGRG	2 cut(s)	50, 359
AoxI	GGCC	3 cut(s)	344, 471, 564
ApeKI	GCWGC	1 cut(s)	546
ApoI	RAATTY	1 cut(s)	460
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	471
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	217, 695
AvaI	CYCGRG	2 cut(s)	50, 359
BalI	TGGCCA	1 cut(s)	566
BbsI	GAAGAC	2 cut(s)	105, 189
BbvI	GCAGC	1 cut(s)	558
BccI	CCATC	1 cut(s)	764
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	4 cut(s)	95, 129, 424, 458
BciT130I	CCWGG	4 cut(s)	17, 203, 597, 714
BcnI	CCSGG	1 cut(s)	130
BfaI	CTAG	2 cut(s)	234, 621
BisI	GCNGC	1 cut(s)	547
BlsI	GCNGC	1 cut(s)	548
BmcAI	AGTACT	1 cut(s)	555
Bme1390I	CCNGG	5 cut(s)	17, 130, 203, 597, 714
BmeT110I	CYCGRG	2 cut(s)	50, 359
BmgT120I	GGNCC	1 cut(s)	471
BmrFI	CCNGG	5 cut(s)	17, 130, 203, 597, 714
BmsI	GCATC	2 cut(s)	489, 507
BpiI	GAAGAC	2 cut(s)	105, 189
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	5 cut(s)	128, 263, 337, 596, 679
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 149, 173, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 364
BseBI	CCWGG	4 cut(s)	17, 203, 597, 714
BseDI	CCNNGG	5 cut(s)	128, 263, 337, 596, 679
BseLI	CCNNNNNNNGG	2 cut(s)	16, 364
BseMII	CTCAG	1 cut(s)	525
BseXI	GCAGC	1 cut(s)	558
BseYI	CCCAGC	1 cut(s)	668
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	307
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	3 cut(s)	346, 473, 566
BsiEI	CGRYCG	1 cut(s)	343
BsiHKCI	CYCGRG	2 cut(s)	50, 359
BsiSI	CCGG	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	16, 364
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	3 cut(s)	346, 473, 566
BsoBI	CYCGRG	2 cut(s)	50, 359
Bsp19I	CCATGG	1 cut(s)	263
BspANI	GGCC	3 cut(s)	346, 473, 566
BspCNI	CTCAG	1 cut(s)	524
BspFNI	CGCG	1 cut(s)	307
BssECI	CCNNGG	5 cut(s)	128, 263, 337, 596, 679
BssNAI	GTATAC	1 cut(s)	493
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	263, 679
Bst1107I	GTATAC	1 cut(s)	493
Bst2UI	CCWGG	4 cut(s)	17, 203, 597, 714
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	374, 698
BstDEI	CTNAG	2 cut(s)	455, 511
BstDSI	CCRYGG	1 cut(s)	263
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstFNI	CGCG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	307
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 313, 451
BstNI	CCWGG	4 cut(s)	17, 203, 597, 714
BstSCI	CCNGG	5 cut(s)	15, 128, 201, 595, 712
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	558
BstV2I	GAAGAC	2 cut(s)	105, 189
BstZ17I	GTATAC	1 cut(s)	493
BsuRI	GGCC	3 cut(s)	346, 473, 566
BtgI	CCRYGG	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	2 cut(s)	519, 774
Cac8I	GCNNGC	2 cut(s)	374, 698
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	471
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	4 cut(s)	55, 295, 554, 578
CviAII	CATG	3 cut(s)	264, 485, 703
CviQI	GTAC	4 cut(s)	55, 295, 554, 578
DdeI	CTNAG	2 cut(s)	455, 511
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	263, 679
Eco88I	CYCGRG	2 cut(s)	50, 359
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRII	CCWGG	4 cut(s)	15, 201, 595, 712
EcoT14I	CCWWGG	2 cut(s)	263, 679
EcoT22I	ATGCAT	1 cut(s)	522
ErhI	CCWWGG	2 cut(s)	263, 679
FaeI	CATG	3 cut(s)	267, 488, 706
FalI	AAGNNNNNCTT	4 cut(s)	174, 206, 356, 388
FatI	CATG	3 cut(s)	263, 484, 702
FblI	GTMKAC	3 cut(s)	150, 434, 492
Fnu4HI	GCNGC	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	547
FspBI	CTAG	2 cut(s)	234, 621
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	1 cut(s)	547
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	346, 473, 566
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	267, 488, 706
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HincII	GTYRAC	2 cut(s)	64, 435
HindII	GTYRAC	2 cut(s)	64, 435
HinfI	GANTC	4 cut(s)	152, 158, 164, 194
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	2 cut(s)	217, 695
Hpy166II	GTNNAC	5 cut(s)	64, 151, 435, 493, 686
Hpy188I	TCNGA	3 cut(s)	157, 163, 169
Hpy188III	TCNNGA	4 cut(s)	37, 353, 361, 621
Hpy8I	GTNNAC	5 cut(s)	64, 151, 435, 493, 686
Hpy99I	CGWCG	6 cut(s)	62, 83, 86, 110, 173, 176
HpyAV	CCTTC	2 cut(s)	358, 379
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	3 cut(s)	57, 81, 791
HpyCH4V	TGCA	8 cut(s)	376, 445, 502, 520, 535, 628, 696, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 313, 451
HpyF3I	CTNAG	2 cut(s)	455, 511
HpySE526I	ACGT	3 cut(s)	57, 81, 791
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	267, 488, 706
HspAI	GCGC	1 cut(s)	305
Lsp1109I	GCAGC	1 cut(s)	558
LweI	GCATC	2 cut(s)	489, 507
MaeI	CTAG	2 cut(s)	234, 621
MaeII	ACGT	3 cut(s)	57, 81, 791
MboII	GAAGA	3 cut(s)	110, 194, 220
MfeI	CAATTG	2 cut(s)	438, 573
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	6 cut(s)	11, 277, 438, 460, 573, 655
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	3 cut(s)	146, 152, 158
MmeI	TCCRAC	3 cut(s)	180, 186, 192
Mox20I	TGGCCA	1 cut(s)	566
Mph1103I	ATGCAT	1 cut(s)	522
MroXI	GAANNNNTTC	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	566
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	5 cut(s)	17, 130, 203, 597, 714
MunI	CAATTG	2 cut(s)	438, 573
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	4 cut(s)	17, 203, 597, 714
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	3 cut(s)	230, 313, 451
NciI	CCSGG	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	263
NlaIII	CATG	3 cut(s)	267, 488, 706
NsiI	ATGCAT	1 cut(s)	522
PaeR7I	CTCGAG	2 cut(s)	50, 359
PcsI	WCGNNNNNNNCGW	5 cut(s)	48, 57, 63, 81, 153
PctI	GAATGC	1 cut(s)	757
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	548
PleI	GAGTC	3 cut(s)	146, 152, 158
PpsI	GAGTC	3 cut(s)	146, 152, 158
Psp6I	CCWGG	4 cut(s)	15, 201, 595, 712
PspFI	CCCAGC	1 cut(s)	668
PspGI	CCWGG	4 cut(s)	15, 201, 595, 712
PspPI	GGNCC	1 cut(s)	471
PspXI	VCTCGAGB	1 cut(s)	50
RsaI	GTAC	4 cut(s)	56, 296, 555, 579
RsaNI	GTAC	4 cut(s)	55, 295, 554, 578
SalI	GTCGAC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	547
Sau96I	GGNCC	1 cut(s)	471
ScaI	AGTACT	1 cut(s)	555
SchI	GAGTC	3 cut(s)	146, 152, 158
ScrFI	CCNGG	5 cut(s)	17, 130, 203, 597, 714
SfaNI	GCATC	2 cut(s)	489, 507
Sfr274I	CTCGAG	2 cut(s)	50, 359
SlaI	CTCGAG	2 cut(s)	50, 359
SmlI	CTYRAG	3 cut(s)	50, 140, 359
SmoI	CTYRAG	3 cut(s)	50, 140, 359
Sse9I	AATT	6 cut(s)	11, 277, 438, 460, 573, 655
SspMI	CTAG	2 cut(s)	234, 621
StyD4I	CCNGG	5 cut(s)	15, 128, 201, 595, 712
StyI	CCWWGG	2 cut(s)	263, 679
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	3 cut(s)	60, 84, 794
TaqI	TCGA	4 cut(s)	51, 197, 360, 434
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	6 cut(s)	11, 277, 438, 460, 573, 655
TatI	WGTACW	1 cut(s)	553
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	519, 774
TseI	GCWGC	1 cut(s)	546
TspDTI	ATGAA	1 cut(s)	719
TspRI	CASTG	2 cut(s)	519, 774
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	460
XbaI	TCTAGA	1 cut(s)	620
XhoI	CTCGAG	2 cut(s)	50, 359
XmiI	GTMKAC	3 cut(s)	150, 434, 492
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	2 cut(s)	234, 621
ZraI	GACGTC	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	555
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.