Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000063.1

Orthogroup ID

OG0001698

Physical Location & Seq

Genomic Coordinates Reverse (-)

171482 .. 172627

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000063.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgttctaccaatatgtccctcaacttggtttctttcttcttgtgcagctaaggtatctgttattggccacatcaaagcatgatgtatacctgatgcagaactttttgcattggaactctttgcacaggagaggctccgaagtactcaatgcggcaaaaccaattgtacctactgagaaaagacctgggttgttgccacgaccactctccagagtgcaaataagcactatggctgtcaaggacaatttgttggttgctgggggcttccaaggtgaactaatctgcaggcacatgaaacaacctggagttgctttctgctcaaaactaacaacagatgagaatgccatcactaatgcagtggatatttttcaaaacccaactggctcaatgagggtactgactgcaaatgatgatgctcaagttagagtttttgaaattgaaaagttcgcttgcctaaatcgcttctccttcgggtggtctgtaaataacacctctgttagtcctgatggtaagctgctcgcagtacttggtgatagtgcagactgtttgattgctgagactcagtctggtaaagctgttgggggcctcaaagggcacttagactattgcttttcttcagattggcacccggatggacgaatcttggctcctgggaaccaagacactacctgtaggctatgggacataaggaacctgtcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

233

Amino Acids

25.93

Weight (kDa)

8.22

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G78070 AT1G78070 AT1G78070
fragaria_vesca	FvH4_5g37830
malus_domestica	MD08G1180000.v1.1 MD15G1365300.v1.1
prunus_persica	Prupe.1G513500_v2.0.a1
pyrus_communis	pycom08g15410 pycom15g32770
rosa_chinensis	RchiOBHm_Chr7g0239721 RchiOBHm_Chr7g0239731 RchiOBHm_Chr7g0239761 RchiOBHm_Chr7g0239781 RchiOBHm_Chr7g0239801
rosa_laevigata	RLG00000000730 RLG00000000732 RLG00000029177
rosa_multiflora	Rmu_sc0000063.1_g000032 Rmu_sc0000063.1_g000033 Rmu_sc0000063.1_g000038 Rmu_sc0000101.1_g000005 Rmu_sc0000101.1_g000014 Rmu_sc0000101.1_g000017 Rmu_sc0000101.1_g000020 Rmu_sc0003622.1_g000011 Rmu_sc0004440.1_g000004 Rmu_sc0007193.1_g000002
rosa_roxburghii	Rroxscaffold_3G00220800 Rroxscaffold_3G00220820
rosa_rugosa	Rorug07G0328900.1 Rorug07G0329400
rosa_samantha	Rh7AG483100 Rh7AG483200 Rh7AG483300 Rh7AG483500 Rh7CG500900 Rh7CG501100
rosa_wichuraiana	Rw7G040440 Rw7G040470 Rw7G040480 Rw7G040520 Rw7G040540 Rw7G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	624
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	4 cut(s)	144, 168, 396, 525
AfiI	CCNNNNNNNGG	2 cut(s)	26, 474
AgsI	TTSAA	3 cut(s)	371, 434, 440
AjnI	CCWGG	3 cut(s)	184, 301, 649
AluBI	AGCT	3 cut(s)	49, 514, 575
AluI	AGCT	3 cut(s)	49, 514, 575
Alw26I	GTCTC	1 cut(s)	551
AoxI	GGCC	2 cut(s)	66, 583
ApeKI	GCWGC	2 cut(s)	46, 514
AspS9I	GGNCC	1 cut(s)	583
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	284, 542
BaeGI	GKGCMC	1 cut(s)	597
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	624
BbvI	GCAGC	2 cut(s)	58, 501
BccI	CCATC	3 cut(s)	353, 500, 626
BciT130I	CCWGG	3 cut(s)	186, 303, 651
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	1 cut(s)	551
BfmI	CTRYAG	2 cut(s)	283, 670
BisI	GCNGC	3 cut(s)	47, 153, 515
BlsI	GCNGC	3 cut(s)	48, 154, 516
BmcAI	AGTACT	2 cut(s)	144, 525
Bme1390I	CCNGG	4 cut(s)	186, 303, 629, 651
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	6 cut(s)	136, 584, 626, 648, 656, 692
BmrFI	CCNGG	4 cut(s)	186, 303, 629, 651
BmsI	GCATC	2 cut(s)	84, 403
BpmI	CTGGAG	2 cut(s)	193, 324
Bpu10I	CCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	185, 268, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 474
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	3 cut(s)	186, 303, 651
BseDI	CCNNGG	3 cut(s)	185, 268, 650
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	2 cut(s)	26, 474
BseMII	CTCAG	3 cut(s)	165, 546, 575
BseNI	ACTGG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	2 cut(s)	58, 501
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	2 cut(s)	65, 558
BshFI	GGCC	2 cut(s)	68, 585
BshNI	GGYRCC	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	629
BslFI	GGGAC	2 cut(s)	2, 695
BslI	CCNNNNNNNGG	2 cut(s)	26, 474
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	2 cut(s)	2, 695
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	68, 585
Bsp1286I	GDGCHC	1 cut(s)	597
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	2 cut(s)	68, 585
BspCNI	CTCAG	3 cut(s)	166, 547, 574
BspLI	GGNNCC	6 cut(s)	136, 584, 626, 648, 656, 692
BspMAI	CTGCAG	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	185, 268, 650
BssNAI	GTATAC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	268
Bst1107I	GTATAC	1 cut(s)	88
Bst2UI	CCWGG	3 cut(s)	186, 303, 651
Bst4CI	ACNGT	1 cut(s)	545
BstC8I	GCNNGC	3 cut(s)	287, 451, 519
BstDEI	CTNAG	5 cut(s)	50, 174, 555, 561, 598
BstF5I	GGATG	1 cut(s)	637
BstMAI	GTCTC	1 cut(s)	551
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNI	CCWGG	3 cut(s)	186, 303, 651
BstSCI	CCNGG	4 cut(s)	184, 301, 627, 649
BstSFI	CTRYAG	2 cut(s)	283, 670
BstSLI	GKGCMC	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	58, 501
BstZ17I	GTATAC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	68, 585
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	3 cut(s)	287, 451, 519
Cfr13I	GGNCC	1 cut(s)	583
Csp6I	GTAC	4 cut(s)	143, 167, 395, 524
CviAII	CATG	2 cut(s)	80, 292
CviQI	GTAC	4 cut(s)	143, 167, 395, 524
DdeI	CTNAG	5 cut(s)	50, 174, 555, 561, 598
EaeI	YGGCCR	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRII	CCWGG	3 cut(s)	184, 301, 649
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	2 cut(s)	83, 295
FaiI	YATR	8 cut(s)	15, 81, 88, 230, 293, 679, 686, 700
FaqI	GGGAC	2 cut(s)	2, 695
FatI	CATG	2 cut(s)	79, 291
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	47, 153, 515
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	3 cut(s)	47, 153, 515
GluI	GCNGC	3 cut(s)	47, 153, 515
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	2 cut(s)	193, 324
HaeIII	GGCC	2 cut(s)	68, 585
HapII	CCGG	1 cut(s)	629
Hin1II	CATG	2 cut(s)	83, 295
HinfI	GANTC	2 cut(s)	559, 639
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	2 cut(s)	284, 542
Hpy166II	GTNNAC	2 cut(s)	88, 275
Hpy188I	TCNGA	2 cut(s)	139, 619
Hpy188III	TCNNGA	2 cut(s)	210, 503
Hpy8I	GTNNAC	2 cut(s)	88, 275
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4V	TGCA	9 cut(s)	46, 97, 109, 124, 217, 285, 356, 404, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	5 cut(s)	50, 174, 555, 561, 598
Hsp92II	CATG	2 cut(s)	83, 295
LmnI	GCTCC	2 cut(s)	140, 652
Lsp1109I	GCAGC	2 cut(s)	58, 501
LweI	GCATC	2 cut(s)	84, 403
MboII	GAAGA	2 cut(s)	29, 606
MfeI	CAATTG	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	597
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	3 cut(s)	162, 244, 435
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	5 cut(s)	30, 125, 384, 502, 596
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	630
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	4 cut(s)	186, 303, 629, 651
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	3 cut(s)	186, 303, 651
MwoI	GCNNNNNNNGC	1 cut(s)	459
NciI	CCSGG	1 cut(s)	629
NlaIII	CATG	2 cut(s)	83, 295
NlaIV	GGNNCC	6 cut(s)	136, 584, 626, 648, 656, 692
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	639
PflFI	GACNNNGTC	1 cut(s)	562
PkrI	GCNGC	3 cut(s)	48, 154, 516
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
Psp6I	CCWGG	3 cut(s)	184, 301, 649
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	3 cut(s)	184, 301, 649
PspN4I	GGNNCC	6 cut(s)	136, 584, 626, 648, 656, 692
PspPI	GGNCC	1 cut(s)	583
PstI	CTGCAG	1 cut(s)	287
PsyI	GACNNNGTC	1 cut(s)	562
RsaI	GTAC	4 cut(s)	144, 168, 396, 525
RsaNI	GTAC	4 cut(s)	143, 167, 395, 524
RseI	CAYNNNNRTG	1 cut(s)	630
SatI	GCNGC	3 cut(s)	47, 153, 515
Sau96I	GGNCC	1 cut(s)	583
ScaI	AGTACT	2 cut(s)	144, 525
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	4 cut(s)	186, 303, 629, 651
SduI	GDGCHC	1 cut(s)	597
SfaNI	GCATC	2 cut(s)	84, 403
SfcI	CTRYAG	2 cut(s)	283, 670
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	3 cut(s)	162, 244, 435
SsiI	CCGC	1 cut(s)	152
StyD4I	CCNGG	4 cut(s)	184, 301, 627, 649
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	545
TasI	AATT	3 cut(s)	162, 244, 435
TatI	WGTACW	2 cut(s)	142, 523
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	639
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	2 cut(s)	46, 514
TspDTI	ATGAA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	363
Tth111I	GACNNNGTC	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	87
ZrmI	AGTACT	2 cut(s)	144, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.